Modeling vegetation greenness and its climate sensitivity with deep‐learning technology

Climate sensitivity of vegetation has long been explored using statistical or process‐based models. However, great uncertainties still remain due to the methodologies’ deficiency in capturing the complex interactions between climate and vegetation. Here, we developed global gridded climate–vegetation models based on long short‐term memory (LSTM) network, which is a powerful deep‐learning algorithm for long‐time series modeling, to achieve accurate vegetation monitoring and investigate the complex relationship between climate and vegetation. We selected the normalized difference vegetation index (NDVI) that represents vegetation greenness as model outputs. The climate data (monthly temperature and precipitation) were used as inputs. We trained the networks with data from 1982 to 2003, and the data from 2004 to 2015 were used to validate the models. Error analysis and sensitivity analysis were performed to assess the model errors and investigate the sensitivity of global vegetation to climate change. Results show that models based on deep learning are very effective in simulating and predicting the vegetation greenness dynamics. For models training, the root mean square error (RMSE) is <0.01. Model validation also assure the accuracy of our models. Furthermore, sensitivity analysis of models revealed a spatial pattern of global vegetation to climate, which provides us a new way to investigate the climate sensitivity of vegetation. Our study suggests that it is a good way to integrate deep‐learning method to monitor the vegetation change under global change. In the future, we can explore more complex climatic and ecological systems with deep learning and coupling with certain physical process to better understand the nature.     

通过食谱分析探讨田螺山与梁王城遗址先民对渔业资源的利用

对渔业食用资源的利用是人类生业经济的重要方面,然而至今尚无专文介绍如何定量分析渔业食物资源在先民食物结构中所占的比例。本文采用利用同位素传递信号重建食谱(FRUITS)模型,以田螺山遗址与梁王城遗址已发表的先民和动植物稳定同位素数据为例,对先民食物结构中的多种食物资源比重进行分析。结果显示,梁王城遗址渔业资源在食谱中占5%~22%;田螺山遗址淡水渔业资源在食谱中占5%~20%,而海洋渔业资源在10%以下。     

CPEB3 deficiency in mice affect ovarian follicle development and causes premature ovarian insufficiency

Premature ovarian insufficiency (POI) is a heterogeneous and multifactorial disorder. In recent years, there has been an increasing interest in research on the pathogenesis and treatment of POI, owing to the implementation of the second-child policy in China. Cytoplasmic polyadenylation element-binding protein 3 (CPEB3) is an RNA-binding protein that can bind to specific RNA sequences. CPEB3 can bind to and affect the expression, cellular location, and stability of target RNAs. Cpeb3 is highly expressed in the ovary; however, its functions remain unknown. In this study, Cpeb3-mutant mice were used to characterize the physiological functions of CPEB3. Cpeb3-mutant female mice manifested signs of gradual loss of ovarian follicles, ovarian follicle development arrest, increased follicle atresia, and subfertility with a phenotype analogous to POI in women. Further analysis showed that granulosa cell proliferation was inhibited and apoptosis was markedly increased in Cpeb3-mutant ovaries. In addition, the expression of Gdf9, a potential target of CPEB3, was decreased in Cpeb3-mutant ovaries and oocytes. Altogether, these results reveal that CPEB3 is essential for ovarian follicle development and female fertility as it regulates the expression of Gdf9 in oocytes, disruption of which leads to impaired ovarian follicle development and POI.Subject terms: RNA-binding proteins, Infertility     

Cutaneous Phaeohyphomycosis of the Right Hand Caused by Exophiala jeanselmei: A Case Report and Literature Review

Mycopathologia - Exophiala spp. is increasingly reported as a pathogen causing the cutaneous, subcutaneous or invasive infection. In this report, we present a case of cutaneous phaeohyphomycosis...     

药用昆虫蜣螂对灵芝发酵和抗小鼠肝癌活性的影响

采用液体深层发酵方式,研究了药用昆虫蜣螂对灵芝细胞生长、关键活性产物发酵动力学和抗小鼠肝癌活性的影响。结果表明,药用昆虫蜣螂在各添加浓度下对灵芝的细胞生长均无显著促进作用;但在添加量为5g/L时,对灵芝多糖和灵芝三萜的发酵动力学有显著影响(P<0.05),在发酵第7天时,灵芝总多糖和总三萜的产量分别达到2.81g/L和539.0mg/L(对照组分别为2.25g/L和428.2mg/L)。小鼠体内抗肝癌结果表明,灵芝对照发酵物的抑癌率为41.61%,灵芝-蜣螂配合物的抑癌率为42.24%;而补加蜣螂发酵后的灵芝加蜣发酵物的抑癌率高达57.21%,与灵芝对照发酵物的抑癌率相比,提高了37.49%。研究表明,采用昆虫蜣螂补料-分批发酵后,灵芝发酵物抗小鼠肝癌的活性得到显著增强。     

药用昆虫蜣螂对灵芝多糖生物合成的影响

采用液体深层发酵方式,研究了几种药用昆虫对灵芝多糖生物合成的影响。结果表明,药用昆虫蜣螂在添加量为5g/L时能显著促进灵芝胞内多糖(IPS)和胞外多糖(EPS)的形成(P<0.05)。胞内多糖和胞外多糖的产量分别由对照的(1.93±0.09)g/L和(520.3±20.2)mg/L提高到(2.41±0.12)g/L和(608.9±20.2)mg/L。灵芝胞内多糖和胞外多糖在DEAE纤维素柱上都可分离得到5种主要组分,其中IPS-1和EPS-1分别为2类多糖的主要组分。进一步用凝胶柱分离显示,IPS-1由3个单个的组分组成,EPS-1由2个单个的组分组成。添加蜣螂发酵后,灵芝胞内多糖和胞外多糖中没有出现新的组分,且各组分的相对含量也没有显著变化(P>0.05),提示添加蜣螂发酵后,灵芝胞内多糖和胞外多糖主要组分的合成途径并未改变。     

Hepatitis C virus induces oxidation and degradation of apolipoprotein B to enhance lipid accumulation and promote viral production

Hepatitis C virus (HCV) infection induces the degradation and decreases the secretion of apolipoprotein B (ApoB). Impaired production and secretion of ApoB-containing lipoprotein is associated with an increase in hepatic steatosis. Therefore, HCV infection-induced degradation of ApoB may contribute to hepatic steatosis and decreased lipoprotein secretion, but the mechanism of HCV infection-induced ApoB degradation has not been completely elucidated. In this study, we found that the ApoB level in HCV-infected cells was regulated by proteasome-associated degradation but not autophagic degradation. ApoB was degraded by the 20S proteasome in a ubiquitin-independent manner. HCV induced the oxidation of ApoB via oxidative stress, and oxidized ApoB was recognized by the PSMA5 and PSMA6 subunits of the 20S proteasome for degradation. Further study showed that ApoB was degraded at endoplasmic reticulum (ER)-associated lipid droplets (LDs) and that the retrotranslocation and degradation of ApoB required Derlin-1 but not gp78 or p97. Moreover, we found that knockdown of ApoB before infection increased the cellular lipid content and enhanced HCV assembly. Overexpression of ApoB-50 inhibited lipid accumulation and repressed viral assembly in HCV-infected cells. Our study reveals a novel mechanism of ApoB degradation and lipid accumulation during HCV infection and might suggest new therapeutic strategies for hepatic steatosis.     

Negligible Immunogenicity of Induced Pluripotent Stem Cells Derived from Human Skin Fibroblasts

Human induced pluripotent stem cells (hiPSCs) have potential applications in cell replacement therapy and regenerative medicine. However, limited information is available regarding the immunologic features of iPSCs. In this study, expression of MHC and T cell co-stimulatory molecules in hiPSCs, and the effects on activation, proliferation and cytokine production in allogeneic human peripheral blood mononuclear cells were examined. We found that no-integrate hiPSCs had no MHC-II and T cell co-stimulatory molecules expressions but had moderate level of MHC-I and HLA-G expressions. In contrast to human skin fibroblasts (HSFs) which significantly induced allogeneic T cell activation and proliferation, hiPSCs failed to induce allogeneic CD45⁺ lymphocyte and CD8⁺ T cell activation and proliferation but could induce a low level of allogeneic CD4⁺ T cell proliferation. Unlike HSFs which induced allogeneic lymphocytes to produce high levels of IFN-γ, TNF-α and IL-17, hiPSCs only induced allogeneic lymphocytes to produce IL-2 and IL-10, and promote IL-10-secreting regulatory T cell (Treg) generation. Our study suggests that the integration-free hiPSCs had low or negligible immunogenicity, which may result from their induction of IL-10-secreting Treg.     

生态学中的点格局研究概况及其在国内的应用

点格局分析是研究生态学格局的工具之一,近年来在生态学中的应用越来越多。为深入了解点格局分析方法在国内的研究与应用情况,以所总结的研究进展、一般步骤和基本要点为背景,分析评述了1996—2015年期间以点格局为主题的国内中文核心期刊文献。结果表明,在国内生态学格局研究中,应用研究占据主导地位,研究对象广泛,包括以树木为主的乔、灌、草等不同生活型的植物,甚至包括景观;基础研究,包括概括性统计量、零模型与点过程模型等方面,以及专用软件工具包的开发等研究薄弱。在应用中存在一定问题,主要表现为:概括性统计量使用单一,且以Ripley的K-函数及其变形为主;零模型(或点过程模型)是科学问题的统计表达,但是有一半以上的研究未明确给出零模型。建议在未来应用研究中重视多种统计量的组合使用和原假设的建立,在探讨热带、亚热带森林等具有复杂空间结构系统的多样性格局时,考虑对象的不同世代和系统的不同垂直层次,并加强多变量或三维概括性统计量的开发、点格局分析方法与动态过程模型的结合研究等工作。     

好氧-厌氧混合污泥启动微生物燃料电池产电性能及微生物群落动态特征

【目的】为探讨好氧-厌氧混合污泥启动微生物燃料电池(Microbial fuel cell,MFC)产电性能以及MFC对微生物群落的选择作用,【方法】以乳酸为底物,应用不依赖于培养的微生物分子生物学技术解析单室MFC启动过程中微生物群落的组成和结构动态学特征。【结果】结果表明,MFC经过3个周期启动成功,最高输出电压230 m V。当MFC外电阻为1656Ω时,最大功率密度11.15 W/m3,电池运行稳定。混合污泥启动MFC以后,阳极生物膜微生物群落结构同种泥差异较大,且多样性降低。生物膜中微生物类群按丰度依次为β-变形菌纲(Betaproteobacteria)24.90%、拟杆菌门(Bacteroidetes)21.30%、厚壁菌门(Firmicutes)9.70%、γ-变形菌纲(Gammaproteobacteria)8.50%、δ-变形菌纲(Deltaproteobacteria)7.90%、绿弯菌门(Chloroflexi)4.20%以及α-变形菌纲(Alphaproteobacteria)3.60%。有利于生物膜形成与稳定的动胶菌属(Zoogloea)和不动杆菌属(Acinetobacter)序列丰度分别占生物膜群落的5.00%和3.90%,与MFC产电能力直接相关的地杆菌属(Geobacter)序列由混合污泥中的0.60%上升至阳极生物膜中的2.60%。【结论】本研究表明,MFC阳极生物膜在驯化过程中对污泥中的微生物进行淘汰和选择,最终驯化形成了有利于生物膜形成与稳定、有机物厌氧发酵与产电的微生物菌群。