mtDNA diversity in rhesus monkeys reveals overestimates of divergence time and paraphyly with neighboring species

Reconstructions of the human-African great ape phylogeny by using mitochondrial DNA (mtDNA) have been subject to considerable debate. One confounding factor may be the lack of data on intraspecific variation. To test this hypothesis, we examined the effect of intraspecific mtDNA diversity on the phylogenetic reconstruction of another Plio- Pleistocene radiation of higher primates, the fascicularis group of macaque (Macaca) monkey species. Fifteen endonucleases were used to identify 10 haplotypes of 40-47 restriction sites in M. mulatta, which were compared with similar data for the other members of this species group. Interpopulational, intraspecific mtDNA diversity was large (0.5%- 4.5%), and estimates of divergence time and branching order incorporating this variation were substantially different from those based on single representatives of each species. We conclude that intraspecific mtDNA diversity is substantial in at least some primate species. Consequently, without prior information on the extent of genetic diversity within a particular species, intraspecific variation must be assessed and accounted for when reconstructing primate phylogenies. Further, we question the reliability of hominoid mtDNA phylogenies, based as they are on one or a few representatives of each species, in an already depauperate superfamily of primates.      

Antarctic scallop (Adamussium colbecki) annual growth rate at Terra Nova Bay

Adamussium colbecki is one of the most well-studied Antarctic molluscs. However, information on its growth rate is currently based on estimates from mark and recapture experiments and from growth-ring analyses. This paper provides the first estimates of the growth pattern of this scallop throughout a year, for individuals maintained under both natural field and laboratory conditions. Results show size-related differences in growth rate, both in the field and in aquaria, with scallops in Terra Nova Bay growing faster than those kept in aquaria. Growth performances were lower than those reported in the literature.     

Anthropogenic radionuclides bioaccumulation in Antarctic marine fauna and its ecological relevance

The paucity of investigations on the presence of artificial radionuclides and their bioaccumulation in Antarctic fauna is due to the erroneous belief that this area is pristine. We report evidence that significant levels of the artificial radionuclides Sr-90, Cs-137, Am-241 and plutonium isotopes can be found in sponges, bivalves, krill and demersal fish fauna of Terra Nova Bay (Ross Sea), sometimes with a seasonal pattern. Increasing concentrations of Cs-137 were detected in the bivalve Adamussium colbecki (Antarctic scallop) during austral summer months, as a result of major trophic activity and changes in metabolic rates. Bioconcentration factors for artificial radionuclides in different Antarctic species are presented and discussed in relation to their different trophic strategies. Unexpectedly high radiocesium bioconcentration factors determined in bivalves suggested the particular role played by filter feeding in bioaccumulation, particularly in summer when radionuclide bioavailability is enhanced. The feeding preference of the trematomiid fish Trematomus bernacchii for the scallop A. colbecki is confirmed, not only by fish gut content analyses, but also through radiometric results. Transuranics bioaccumulation by sensitive species allowed some interesting comparisons on the different plutonium contamination of the southern hemisphere with respect to the northern one. Accepted: 25 April 2000     

An invisible ubiquitin conformation is required for efficient phosphorylation by PINK1

The Ser/Thr protein kinase PINK1 phosphorylates the well‐folded, globular protein ubiquitin (Ub) at a relatively protected site, Ser65. We previously showed that Ser65 phosphorylation results in a conformational change in which Ub adopts a dynamic equilibrium between the known, common Ub conformation and a distinct, second conformation wherein the last β‐strand is retracted to extend the Ser65 loop and shorten the C‐terminal tail. We show using chemical exchange saturation transfer (CEST) nuclear magnetic resonance experiments that a similar, C‐terminally retracted (Ub‐CR) conformation also exists at low population in wild‐type Ub. Point mutations in the moving β5 and neighbouring β‐strands shift the Ub/Ub‐CR equilibrium. This enabled functional studies of the two states, and we show that while the Ub‐CR conformation is defective for conjugation, it demonstrates improved binding to PINK1 through its extended Ser65 loop, and is a superior PINK1 substrate. Together our data suggest that PINK1 utilises a lowly populated yet more suitable Ub‐CR conformation of Ub for efficient phosphorylation. Our findings could be relevant for many kinases that phosphorylate residues in folded protein domains.     

From recommendation to action: psychosocial factors influencing physician intention to use Health Technology Assessment (HTA) recommendations

Background

The Evidence-Based Practice (EBP) Project has been investigating the implementation of evidence-based mental health practices (Assertive Community Treatment, Family Psychoeducation, Integrated Dual Diagnosis Treatment, Illness Management and Recovery, and Supported Employment) in state public mental health systems in the United States since 2001. To date, Project findings have yielded valuable insights into implementation strategy characteristics and effectiveness. This paper reports results of an effort to identify and classify state-level implementation activities and strategies employed across the eight states participating in the Project.

Methods

Content analysis and Greenhalgh et al's (2004) definition of innovation were used to identify and classify state-level activities employed during three phases of EBP implementation: Pre-Implementation, Initial Implementation and Sustainability Planning. Activities were coded from site visit reports created from documents and notes from key informant interviews conducted during two periods, Fall 2002 – Spring 2003, and Spring 2004. Frequency counts and rank-order analyses were used to examine patterns of implementation activities and strategies employed across the three phases of implementation.

Results

One hundred and six discreet implementation activities and strategies were identified as innovative and were classified into five categories: 1) state infrastructure building and commitment, 2) stakeholder relationship building and communications, 3) financing, 4) continuous quality management, and 5) service delivery practices and training. Implementation activities from different categories were employed at different phases of implementation.

Conclusion

Insights into effective strategies for implementing EBPs in mental health and other health sectors require qualitative and quantitative research that seeks to: a) empirically test the effects of tools and methods used to implement EBPs, and b) establish a stronger evidence-base from which to plan, implement and sustain such efforts. This paper offers a classification scheme and list of innovative implementation activities and strategies. The classification scheme offers potential value for future studies that seek to assess the effects of various implementation processes, and helps establish widely accepted standards and criteria that can be used to assess the value of innovative activities and strategies.     

Temperature effects on summer growth rates in the Antarctic scallop, Adamussium colbecki

Annual growth rates of Antarctic marine organisms are low compared to their relatives from warmer waters. Previous studies hypothesise that high food availability during austral spring–summer may enable Antarctic invertebrates to attain comparatively high short-term growth rates despite the low temperature. Neither a temperature-growth experiment with juvenile Adamussium colbecki (Smith 1902) nor the comparison of A. colbecki summer growth rates with an empirical scallop specific growth-to-temperature relationship could confirm this hypothesis. Hence, summer growth rates of young, immature A. colbecki are strongly affected by temperature, i.e. no uncoupling from temperature.     

Shallow- and deep-water mollusc distribution at Terra Nova Bay (Ross Sea, Antarctica)

The aim of this work is to improve the knowledge of the mollusc fauna of Terra Nova Bay (Ross Sea), on the basis of more than 100 stations sampled from 25 to 1100 m depth, during Italian Antarctic Expeditions (austral summers 1987/1988, 1989/1990, 1993/1994, 1994/1995, 1995/1996 and 1997/1998). In shallow waters, gastropod fauna is represented by 31 species, among which Neobuccinum eatoni, Onoba gelida, Powellisetia deserta, Philine cf. apertissima and Austrodoris kerguelenensis are the most abundant, while among bivalves (25 species) the commonest species are Adamussium colbecki, Yoldia eightsi, Laternula elliptica and “Montacuta”nimrodiana. At present, most of the Antarctic mollusc species are known as having circumantarctic distribution and are considered eurybathic. Moreover, in general, only scarce data are available on their substrate preferences, because of their occurrence in scattered sampling stations with different sediment features. In the present study carried out at Terra Nova Bay, based on a relatively high number of stations, a clear zonation of mollusc assemblages is shown, according to depth and sediment features. While gastropods characterise the superficial algal belts dominated by the red algae Iridaea cordata and Phyllophora antarctica, bivalve distribution is wider. Adamussium colbecki is the dominant species in the upper 100 m, both on soft and hard bottoms, if the slope is suitable (density up to 40–60 ind./m²). On coarse sands, this species is frequently accompanied by L. elliptica (density <20 ind./m²), while Y. eightsi characterises organic- enriched bottoms (density 70–80 ind./m²). Below 200 m depth Adacnarca nitens, Limatula hodgsoni, “Montacuta”nimrodiana and Mysella gibbosa are commonly found on relatively coarse sediments, while Thyasira dearborni and Yoldiella ecaudata prefer muddy bottoms. In order to identify bivalve assemblages, multivariate analyses were applied to stations grouped into depth ranges, sediment features and location. While shallow bathymetric ranges (25–200 m) are clearly defined, deeper clusters of stations are more influenced by the high degree of eurybathy of most of the species and by the scattered distribution of the sediment particle sizes. Accepted: 18 September 1999     

PARTAKE Survey of Public Knowledge and Perceptions of Clinical Research in India

Background

A public that is an informed partner in clinical research is important for ethical, methodological, and operational reasons. There are indications that the public is unaware or misinformed, and not sufficiently engaged in clinical research but studies on the topic are lacking. PARTAKE – Public Awareness of Research for Therapeutic Advancements through Knowledge and Empowerment is a program aimed at increasing public awareness and partnership in clinical research. The PARTAKE Survey is a component of the program.

Objective

To study public knowledge and perceptions of clinical research.

Methods

A 40-item questionnaire combining multiple-choice and open-ended questions was administered to 175 English- or Hindi-speaking individuals in 8 public locations representing various socioeconomic strata in New Delhi, India.

Results

Interviewees were 18–84 old (mean: 39.6, SD±16.6), 23.6% female, 68.6% employed, 7.3% illiterate, 26.3% had heard of research, 2.9% had participated and 58.9% expressed willingness to participate in clinical research. The following perceptions were reported (% true/% false/% not aware): ‘research benefits society’ (94.1%/3.5%/2.3%), ‘the government protects against unethical clinical research’ (56.7%/26.3%/16.9%), ‘research hospitals provide better care’ (67.2%/8.7%/23.9%), ‘confidentiality is adequately protected’ (54.1%/12.3%/33.5%), ‘participation in research is voluntary’ (85.3%/5.8%/8.7%); ‘participants treated like ‘guinea pigs’’ (20.7%/53.2%/26.0%), and ‘compensation for participation is adequate’ (24.7%/12.9%/62.3%).

Conclusions

Results suggest the Indian public is aware of some key features of clinical research (e.g., purpose, value, voluntary nature of participation), and supports clinical research in general but is unaware of other key features (e.g., compensation, confidentiality, protection of human participants) and exhibits some distrust in the conduct and reporting of clinical trials. Larger, cross-cultural surveys are required to inform educational programs addressing these issues.     

Interferon-β induces cellular senescence in cutaneous human papilloma virus-transformed human keratinocytes by affecting p53 transactivating activity

Interferon (IFN)-β inhibits cell proliferation and affects cell cycle in keratinocytes transformed by both mucosal high risk Human Papilloma Virus (HPV) and cutaneous HPV E6 and E7 proteins. In particular, upon longer IFN-β treatments, cutaneous HPV38 expressing cells undergo senescence. IFN-β appears to induce senescence by upregulating the expression of the tumor suppressor PML, a well known IFN-induced gene. Indeed, experiments in gene silencing via specific siRNAs have shown that PML is essential in the execution of the senescence programme and that both p53 and p21 pathways are involved. IFN-β treatment leads to a modulation of p53 phosphorylation and acetylation status and a reduction in the expression of the p53 dominant negative ΔNp73. These effects allow the recovery of p53 transactivating activity of target genes involved in the control of cell proliferation. Taken together, these studies suggest that signaling through the IFN pathway might play an important role in cellular senescence. This additional understanding of IFN antitumor action and mechanisms influencing tumor responsiveness or resistance appears useful in aiding further promising development of biomolecular strategies in the IFN therapy of cancer.