Methodological approaches for studying apoplastic redox activity: 2. Regulation of peroxidase activity

This work is devoted to the study of mechanisms of substrate regulation of extracellular peroxidase (ECPOX) activity at a distant stress (wounding) signal transmission from aboveground organ (leaf) of wheat (Triticum aestivum L., cv. Kazanskaya Yubileinaya) seedlings to the roots. Along with the high dianizidine peroxidase activity, the extracellular solution manifested 3,4-dihydrooxi-L-phenylalanine peroxidase, ascorbate peroxidase, and catalase activities. Dianizidine peroxidases were represented by several isoforms and had broad substrate specificity. It was found that ECPOX was released from the roots into the growing solution and its activity in the solution increased with root growth. Excision of the apical leaf parts in seedlings induced a sharp activation of root ECPOX in the growing solution. The interaction between ECPOX substrates at oxidation in two- and three-component systems is demonstrated. The role of ECPOX in the control of ROS balance in the plant cell apoplast might be determined by competitive and complementary interactions between different peroxidase substrates. Such substrate-substrate regulation of peroxidase activities may be important for stress-induced oxidative burst in plant cells.     

Methodological approaches for studying apoplastic redox activity: 1. Mechanisms of peroxidase release

It was demonstrated the efficiency of the application of extracellular solution, i.e., the leachate derived from roots after their incubation, for the analysis of apoplastic redox enzymes (exemplified by peroxidase) in the roots of 5-day-old seedlings of spring wheat (Triticum aestivum L., cv. Kazanskaya yubileinaya) after wounding stress. Such non-invasive approach allows the studying of enzymes without a disruption of plant tissue. The inhibitory analysis showed that newly synthesized and pre-existing in the cells peroxidases were not released from the cytoplasm at stress conditions. The proposed methodological approach for obtaining the enzymatic extracts of apoplastic redox enzymes opens up broad prospects for researches of plant immunity and stress responses.     

Prediction of the three-dimensional structure of aflatoxin of Aspergillus flavus by homology modelling

Aflatoxins are polyketide-derived secondary metabolites produced by Aspergillus spp. The toxic effects of aflatoxins have adverse consequences for human health and agricultural economics. The aflR gene, a regulatory gene for aflatoxin biosynthesis, encodes a protein containing a zinc-finger DNA-binding motif. AFLR-Protein three-dimensional model was generated using Robetta server. The modeled AFLR-Protein was further optimization and validation using Rampage. In the simulations, we monitored the backbone atoms and the C-α-helix of the modeled protein. The low RMSD and the simulation time indicate that, as expected, the 3D structural model of AFLR-protein represents a stable folding conformation. This study paves the way for generating computer molecular models for proteins whose crystal structures are not available and which would aid in detailed molecular mechanism of inhibition of aflatoxin.     

Mapping the amino acid properties of constituent nucleoporins onto the yeast nuclear pore complex

Visualization of molecular structures aids in the understanding of structural and functional roles of biological macromolecules. Macromolecular transport between the cell nucleus and cytoplasm is facilitated by the nuclear pore complex (NPC). The ring structure of the NPC is large and contains several distinct proteins (nucleoporins) which function as a selective gate for the passage of certain molecules into and out of the nucleus. In this note we demonstrate the utility of a python code that allows direct mapping of the physiochemical properties of the constituent nucleoporins on the scaffold of the yeast NPC׳s cytoplasmic view. We expect this tool to be useful for researchers to visualize the NPC based on their physiochemical properties and how it alters when specific mutations are introduced in one or more of the nucleoporins. The code developed using Python is available freely from the authors.     

Activation of extracellular peroxidase of wheat roots under the action of xenobiotics

We studied the influence of xenobiotics of various chemical natures, including N,N’-dicyclohexylcarbodiimide, diethylstilbestrol, and chlorpromazine, on the activity of peroxidase, a redox-enzyme that participates in defense reactions of plants. It was shown that the influence of the studied xenobiotics on excised roots of wheat seedlings caused an increase in the permeability of plasmalemma for K⁺ and H⁺ and stimulated the activity of the extracellular peroxidase that forms the superoxide radical anion. It is assumed that the extracellular peroxidase can initiate the transformation of alien compounds on the cell surface, before their entrance into the cells.