A PAS Domain Binds Asparagine in the Chemotaxis Receptor McpB in Bacillus subtilis

During chemotaxis toward asparagine by Bacillus subtilis, the ligand is thought to bind to the chemoreceptor McpB on the exterior of the cell and induce a conformational change. This change affects the degree of phosphorylation of the CheA kinase bound to the cytoplasmic region of the receptor. Until recently, the sensing domains of the B. subtilis receptors were thought to be structurally similar to the well studied Escherichia coli four-helical bundle. However, sequence analysis has shown the sensing domains of receptors from these two organisms to be vastly different. Homology modeling of the sensing domain of the B. subtilis asparagine receptor McpB revealed two tandem PAS domains. McpB mutants having alanine substitutions in key arginine and tyrosine residues of the upper PAS domain but not in any residues of the lower PAS domain exhibited a chemotactic defect in both swarm plates and capillary assays. Thus, binding does not appear to occur across any dimeric surface but within a monomer. A modified capillary assay designed to determine the concentration of attractant where chemotaxis is most sensitive showed that when Arg-111, Tyr-121, or Tyr-133 is mutated to an alanine, much more asparagine is required to obtain an active chemoreceptor. Isothermal titration calorimetry experiments on the purified sensing domain showed a K_D to asparagine of 14 μm, with the three mutations leading to less efficient binding. Taken together, these results reveal not only a novel chemoreceptor sensing domain architecture but also, possibly, a different mechanism for chemoreceptor activation.     

Successful immunotherapy with matrix metalloproteinase-derived peptides in adjuvant arthritis depends on the timing of peptide administration

We have recently found that matrix metalloproteinases (MMPs) are targets for T-cell and B-cell reactivity in experimental arthritis. In the present article, we investigate whether modulation of MMP-specific T-cell responses could influence the course of adjuvant arthritis (AA). Lewis rats were treated nasally with MMP peptides prior to or after AA induction. Administration of the MMP-10 or the MMP-16 peptide prior to AA induction reduced the arthritic symptoms. In contrast, administration of the MMP-10 peptide after AA induction aggravated the arthritic symptoms. The present study shows the possible usefulness of MMP peptides for immunotherapy. However, a clear understanding of proper timing of peptide administration is crucial for the development of such therapies.     

Feeding patterns of monophagous,oligophagous, and polyphagous insect herbivores: The effect of resource abundance and plant chemistry

Summary Leaf tissue preferences of monophagous, oligophagous, and polyphagous insect herbivores were determined using young and mature leaf tissue abundances and herbivore feeding observations. Larvae of monophagous and oligophagous herbivores preferred young leaf tissues while, overall, larvae of polyphagous species preferred mature leaves of their various host plants. Even though a species is often polyphagous over its geographical range, larvae from local populations may be very specialized in their diet. When this occurs these specialized larvae prefer the more nutritious and perhaps more toxic young leaves of some of their host plants. Resource abundance and plant chemistry are discussed as major factors influencing herbivore feeding patterns.     

Tannin,nitrogen, and cell wall composition of green vs. senescent Douglas-fir foliage

Summary Tannin, cell wall, and nitrogen composition of green foliage and needle litter of similar-aged Douglas-fir (Pseudotsuga menziesii Mirb. Franco) from two stands differing in density and crown closure were compared. Trees in the closed-canopy stand had a lower basal area growth rate than those in the open-canopy stand. Stands did not differ in wood basal area/ha or forest floor C/N ratios, but the closed-canopy stand had a significantly larger accumulation of forest floor biomass and significantly higher levels of field-extractable nitrogen and nitrogen mineralization rates. Green foliage from trees in the closed-canopy stand had significantly lower nitrogen, astringency, and lignin contents, but higher cellulose concentration than trees in the open-canopy stand. These trends, inconsistent with the inverse relationship often observed between nitrogen and polyphenol contents of foliage, may result from differences in relative resource availability in the two stands. In contrast to green foliage, needle litter from the two stands had comparable contents of nitrogen, cellulose, and lignin, but astringency was significantly higher in litter from the closed-canopy stand. It is suggested that, within the constraints imposed by site conditions, evergreens may alter the tannin composition of senescing foliage, potentially affecting herbivory and decomposition differently.     

LB Simulation of 3D Spinodal Decomposition in the Inertial Regime

Abstract

We present simulation results of late-stage coarsening of a 3D symmetric binary fluid using a lattice Boltzmann method on a 256³ grid. With reduced lengths and times L, T (scales set by viscosity, density and surface tension) our datasets taken together cover 1 < L < 10⁵, 10 < T < 10⁸, equivalent to Reynolds numbers 0.1 < Re < 350.At Re < 100 we find clear evidence of Furukawa's inertial scaling (L proportional to T ^2/3), after a very broad crossover from the viscous regime (L proportional to T).     

The effects of 21 or 30% O2 plus umbilical cord occlusion on fetal breathing and behavior.

We have shown previously that continuous fetal breathing can be induced by 100% O2 alone or combined with umbilical cord occlusion (Baier, Hasan, Cates, Hooper, Nowaczyk & Rigatto, 1990). To know whether it could also be induced by lower O2 concentrations plus cord occlusion, we studied 9 chronically instrumented fetal sheep (16 experiments) using our window model. After a baseline cycle [1 low voltage + 1 high voltage electrocortical activity (ECoG) epoch] the fetal lung was distended via an endotracheal tube to about 30 cm H2O. Inspired N2 (control) and 21 or 30% O2 were given for one cycle each. While on 21% or 30% O2 the umbilical cord was occluded (balloon cuff). In 10 out of 16 experiments breathing output (% maximum of integral of EMGdi x f) increased after cord occlusion from 80 +/- 48 (N2) to 2871 +/- 641 (SEM; P < 0.01); in 7 of them breathing became continuous. Arterial PO2 increased from 14 +/- 1 (N2) to 33.5 +/- 5 Torr (occlusion; P < 0.01). In the other 6 experiments breathing output decreased from 319 +/- 116 (N2) to 86 +/- 38 (occlusion; P < 0.01) and arterial PO2 changed from 18 +/- 1 (N2) to 22 +/- 5 Torr (occlusion; P = 0.4). Arterial PCO2 increased similarly after occlusion in both groups, those which did respond with increased breathing (to 46 +/- 2 Torr) and those which did not respond (to 48 +/- 3 Torr; P = 0.6). The percent low voltage ECoG and the behavioral score increased after occlusion in the responder group only.(ABSTRACT TRUNCATED AT 250 WORDS)