Understorey vegetation change in a Picea mariana chronosequence

Eighteen black spruce (Picea mariana) stands, representing postfire ages of 26 to 120 yr, were surveyed for understorey vegetation and site/microsite characteristics at two spatial scales. This enabled comparison of within- versus among-stand compositional variation.Detrended correspondence analysis (DCA) ordination among the 18 stands revealed a complex age/moisture gradient. DCA ordination among 1 800 quadrats within the stands indicated a similar gradient with much compositional overlap. Quadrats were grouped, using two-way indicator species analysis (TWINSPAN), into 9 classes each representing a phase in understorey vegetation composition. These phases shifted in abundance from young to old stands with a high degree of concordance among replicates in the same age class. Understorey succession is strongly linked to the stages in tree growth, mortality and thinning coupled with the accumulation of site moisture.Abbreviations DCA Detrended Corrospondence Analysis     

Molecular genetic studies of Creutzfeldt-Jakob disease

Genetic study of over 200 cases of Creutzfeldt-Jakob disease (CJD), Gerstmann-Sträussler-Scheinker disease (GSS), fatal familial insomnia (FFI), and kuru have brought a reliable body of evidence that the familial forms of CJD and all known cases of GSS and FFI are linked to germline mutations in the coding region of the PRNP gene on chromosome 20, either point substitutions or expansion of the number of repeat units. No pathogenic mutations have so far been found in sporadic or infectious forms of CJD, although there are features of genetic predisposition in iatrogenic CJD and kuru. In FFI and familial CJD, clinically and pathologically distinct syndromes that are both linked to the 178^Asp→Asn substitution, phenotypic expression is dependent on a polymorphism at codon 129. Synthetic peptides homologous to several regions of PrP spontaneously form insoluble amyloid fibrils with unique morphological characteristics and polymerization tendencies. Peptides homologous to mutated regions of PrP exhibit enhanced fibrilogenic properties and, if mixed with the wild-type peptide, produce even more abundant and larger fibrous aggregates. A similar process in vivo may lead to amyloid accumulation and disease, and transmission of “baby fibrils” may induce disease in other hosts.     

Role of glycoprotein PE2 in formation and maturation of the Sindbis virus spike.

Sindbis virus envelope assembly is a multistep process resulting in the maturation of a rigid, highly ordered T=4 icosahedral protein lattice containing 80 spikes composed of trimers of E1-E2 heterodimers. Intramolecular disulfide bonds within E1 stabilize E1-E1 associations required for envelope formation and maintenance of the envelope's structural integrity. The structural integrity of the envelope protein lattice is resistant to reduction by dithiothreitol (DTT), indicating that E1 disulfides which stabilize structural domains become inaccessible to DTT at some point during virus maturation. The development of E1 resistance to DTT occurs prior to the completion of E1 folding and is temporally correlated with spike assembly in the endoplasmic reticulum. From these data we have predicted that in the final stages of spike assembly, E1 intramolecular disulfides, which stabilize the structural integrity of the envelope protein lattice, are buried within the spike and become inaccessible to the reductive activity of DTT. The spike is formed prior to the completion of E1 folding, and we have suggested that PE2 (the precursor to E2) may play a critical role in E1 folding after PE2-E1 oligomer formation has occurred. In this study we have investigated the role of PE2 in E1 folding, oligomer formation, and development of E1 resistance to both protease digestion and reduction by DTT by using a Sindbis virus replicon (SINrep/E1) which allows for the expression of E1 in the presence of truncated PE2. Through pulse-chase analysis of both Sindbis virus- and SINrep/E1-infected cells, we have determined that the folding of E1 into a trypsin-resistant conformation and into its most compact and stable form is not dependent upon association of E1 with PE2. However, E1 association with PE2 is required for oligomer formation, the export of E1 from the endoplasmic reticulum, and E1 acquisition of resistance to DTT.     

Quantitative video sampling of coral reef benthos: large-scale application

The feasibility of reliably estimating percent cover of coral reef benthos by video techniques is examined. Video belt transects were recorded within study areas on Davies and John Brewer Reefs in the central Great Barrier Reef during September 1988. Two years later in September 1990, the study area at Davies Reef was resampled concurrently by video and line intercept transects. Percent cover data of major coral growth forms and non-biotic physionomic attributes were extracted from video footage by scoring the identity of items located at even or random spaced points along the transect. A cost-benefit analysis which compared increases in precision with increases in sampling effort suggested that the optimum regime for analyzing 200 m long video transects was five subsamples of 110 random points or one sample of 550. This regime resolved both spatial variability at large and smaller spatial scales (between study areas and among transects) and temporal change (within a single study area over a two year period) for total live coral and individual growth forms. The strengths of the technique lie in its cost-savings in filed expenses, and in the production of a permanent visual record. The limitations of the technique lie in reduced taxonomic resolution when compared with hands on field techniques. The results suggest that for broad taxonomic categories of coral reef benthos reliable estimates of relative abundance can be obtained by video techniques.     

Metabolism of adenine nucleotides by ectoenzymes of vascular endothelial and smooth-muscle cells in culture.

1. Pig aortic endothelial and smooth-muscle cells in culture rapidly catabolize exogenous ATP, ADP or AMP. 2. In both cell types catabolism is due to Mg2+-stimulated ectoenzymes. 3. Inhibition and substrate-specificity studies suggest that both cell types possess three distinct ectonucleotidases, namely nucleoside triphosphatase (EC 3.6.1.15), nucleoside diphosphatase (EC 3.6.1.6) and 5'-nucleotidase (EC 3.1.3.5), as well as nucleoside diphosphate kinase (EC 2.7.4.6). 4. These ectonucleotidase systems could be of importance in the regulation of neurotransmission, blood platelet function and vasodilation.     

Determination of plasmid copy number by fluorescence densitometry

A simple and reliable method for the determination of plasmid copy numbers by direct fluorescence densitometry of ethidium bromide-stained electrophoretic gels was developed. In developing the method, the following parameters were evaluated and controlled: plasmid DNA trapping in the linear chromosomal DNA, staining-destaining kinetics for ethidium bromide, linearity of the fluorescence response, and the effect of the molecular topology of DNA on ethidium bromide binding to DNA in agarose.     

Three patterns of mitochondrial DNA nucleotide divergence in the meadow vole,Microtus pennsylvanicus

Summary The DNA sequence was determined for the cytochrome c oxidase II (COII), tRNA^Lys, and ATPase 8 genes from the mitochondrial genome of the meadow vole, Microtus pennsylvanicus. When compared to other rodents, three different patterns of evolutionary divergence were found. Nucleotide variation in tRNA^Lys is concentrated in the TC loop. Nucleotide variation in the COII gene in three genera of rodents (Microtus, Mus, Rattus) consists predominantly of transitions in the third base positions of codons. The predicted amino acid sequence in highly conserved (>92% similarity). Analysis of the ATPase 8 gene among four genera (Microtus, Cricetulus, Mus, Rattus) revealed more detectable transversions than transitions, many fixed first and second position mutations, and considerable amino acid divergence. The rate of nucleotide substitution at nonsynonymous sites in the ATPase 8 gene is 10 times the rate in the COII gene. In contrast, the estimated absolute mutation rate as determined by analysis of nucleotide substitutions at fourfold degenerate sites probably is the same for the two genes. The primary sequences of the ATPase 8 and COII peptides are constrained differently, but each peptide is conserved in terms of predicted secondary-level configuration.     

Lesser Prairie-Chicken Survival in Varying Densities of Energy Development

Anthropogenic features increasingly affect ecological processes with increasing human demand for natural resources. Such effects also have the potential to vary depending on the sex and age of an individual because of inherent behavioral and life experience differences. For the lesser prairie-chicken (Tympanuchus pallidicinctus), studies on male survival are limited because most previous research has been focused on females. To better understand patterns of lesser prairie-chicken survival in habitat with varying levels of anthropogenic infrastructure associated with oil and natural gas development, we monitored survival of 178 radio-tagged male and female lesser prairie-chickens in eastern New Mexico, USA, from 2013 to 2015. We examined the relationships of shrub cover, proximity to and density of anthropogenic features (i.e., utility poles), displacement of natural vegetation by anthropogenic features (i.e., area of roads and well pads), and individual demographics (i.e., sex, age) with lesser prairie-chicken survival. Furthermore, we categorized the probable cause of mortality and examined its relationship with oil and gas development intensity (indexed by utility pole density) within 1,425 m of an individual's mortality site or final observed location. We predicted that survival would be lower for individuals exposed to greater levels of anthropogenic features, and that males and subadults would be more negatively affected than females and adults because of increased exposure to predators during the lekking season and naiveté. Relationships between survival and utility pole density, sex, and age were supported in our top-ranked models, whereas models including other anthropogenic and natural features (i.e., roads, well pads, shrub cover) received little support. We predicted a substantial decrease in adult and subadult male survival with increasing densities of utility poles. The relationship between survival and utility pole density for females was weaker and not as clearly supported as for males. We did not find a detectable difference in utility pole counts among probable mortality causes. Our findings highlight the importance of including male lesser prairie-chickens in research and conservation planning, and the negative effect that high densities of anthropogenic features can have on lesser prairie-chicken survival. © 2021 The Wildlife Society.     

Spatially Explicit Assessment of Sandhill Crane Exposure to Potential Transmission Line Collision Risk

Infrastructure development can affect avian populations through direct collision mortality. Estimating the exposure of local bird populations to the risk of direct mortality from infrastructure development requires site- and species-specific data, which managers may find difficult to obtain at the scale over which management decisions are made. We quantify the potential exposure of sandhill cranes (Antigone canadensis) to collision with horizontal structures (e.g., transmission lines) within vital wintering grounds of the Middle Rio Grande Valley (MRGV), New Mexico, USA, 2014–2020. Limited maneuverability and visual acuity make sandhill cranes vulnerable to collisions with infrastructure bisecting their flight paths. We used data from 81 global positioning system (GPS)-tagged cranes to estimate the spatially explicit flight height distribution along the MRGV, the passage rate across hypothetical transmission lines, and the resulting exposure rate (exposed passes/crane/day). The exposure rate ranged from 0–0.28 exposed passes/crane/day (median = 0.015) assuming an exposure zone of 7–60 m above ground level, and identified hotspots of potential exposure within the MRGV. Mapped exposure rates can assist in the siting of proposed high-voltage transmission lines, or other infrastructure, to limit effects on sandhill cranes and other avian species at risk of collision. Our approach can be replicated and applied in similar situations where birds are exposed to possible collision with power lines. © 2021 The Authors. The Journal of Wildlife Management published by Wiley Periodicals LLC on behalf of The Wildlife Society.     

Automated creation and tuning of personalised muscle paths for OpenSim musculoskeletal models of the knee joint

Biomechanics and Modeling in Mechanobiology - Computational modelling is an invaluable tool for investigating features of human locomotion and motor control which cannot be measured except through...