The impact of founder events and introductions on genetic variation in the muskox <Emphasis Type="Italic">Ovibos moschatus</Emphasis> in Sweden

The muskox Ovibos moschatus (Zimmerman 1780) is a specialised arctic mammal with a highly fragmented circumpolar distribution, with native populations in Canada and east Greenland and introduced populations in west Greenland, Alaska, Siberia and Eurasia. In 1971, five O. moschatus individuals from an introduced population in Norway migrated to Sweden. After a peak population of 36 individuals in the mid-1980s, the Swedish population now numbers seven individuals, making it vulnerable to both demographic and genetic stochasticity (i.e. inbreeding). Here, we analyse genetic variation among native and introduced populations of O. moschatus to evaluate the genetic effect of sequential founder events in this species. Our results show that genetic variation among native and introduced O. moschatus populations do not conform entirely to the expectations from sequential founder events, most likely because of random processes associated with introduction. In the Swedish population, a calf resulting from the mating of a wild cow and a captive Greenlandic bull contributes significantly to the current genetic variation. Thus, even a single outbreeding event may, at least momentarily, increase the genetic variation and potentially prevent inbreeding depression. Our results should aid the long-term preservation of O. moschatus in Sweden and Europe.     

Detecting hybridization between willow grouse (<Emphasis Type="Italic">Lagopus lagopus</Emphasis>) and rock ptarmigan (<Emphasis Type="Italic">L. muta</Emphasis>) in Central Sweden through Bayesian admixture analyses and mtDNA screening

Willow grouse (L. lagopus) and rock ptarmigan (L. muta) are sibling species with similar phenotypic and life histories that coexist sympatrically in wide areas of their distribution range. These grouse are amongst the most popular game birds in Scandinavia but contrary to other quarry species, no restocking with captive-bred animals has ever been performed. The discovery of two individuals with intermediate plumage features evoked the question of possible hybridization events between both species, an idea that did not seem too unlikely on the basis of habitat overlap. Thus, to assess whether any genetic exchange is occurring, we used different Bayesian-based admixture analyses of multilocus genotypes determined at twelve microsatellite loci. We also obtained mitochondrial COI-sequences from a selected number of individuals to infer the maternal geneflow and potential introgression. The capacity of our panel of microsatellite markers to detect hybridization was verified using assignments of simulated genotypes. We then evaluated the extent of hybridization in an actual sample of 111 individuals collected in a 100-km² area in the Scandinavian mountain range. An admixed condition was verified in one of the suspected hybrids, that seemed to carry a L. muta genotype with partial L. lagopus introgression. In addition, more than 4% of L. lagopus showed signs of hybridization under the most conservative scenario with respect to discrepancies between population assignment methods. This was unexpected, given that no L. lagopus displayed any apparent intermediate plumage features. Furthermore, interspecific geneflow of mtDNA haplotypes was lower than expected; which suggests that Haldane’s rule might apply for these two grouse species. Hence, plumage identification of hybrid ancestry is not always reliable and might lead to biases in the estimation of hybridization rates. Hybridisation may be expected to increase if the climate gets warmer as the habitat overlap between the species will become more extensive. We discuss whether hybridisation is a threat to the long-term survival of any of the two species.     

Studies on continuous ethanol fermentation of sugar cane molasses

Summary A new laboratory system for continuous fermentation is described. It is well suited for fermenting concentrated substrates such as moderately dilute molasses. A rotating microporous filter, which is annexed to the fermentor vessel, allows the free escape of metabolic products while retaining yeast in the fermentor.The slop is recirculated after removal of ethanol by distillation leading to a build-up of non-fermentables. The concentration of these and of yeast cells is checked by a controlled bleed. The described system is a useful tool for small-scale experiments on continuous ethanol fermentation.     

Objective Assessment of Nuclear and Cortical Cataracts through Scheimpflug Images: Agreement with the LOCS III Scale

PurposeTo assess nuclear and cortical opacities through the objective analysis of Scheimpflug images, and to check the correlation with the Lens Opacity Classification System III (LOCS III).MethodsNuclear and cortical opacities were graded according to the LOCS III rules after pupil dilation. The maximum and average pixel intensity values along an elliptical mask within the lens nucleus were taken to analyse nuclear cataracts. A new metric based on the percentage of opaque pixels within a region of interest was used to analyse cortical cataracts. The percentage of opaque pixels was also calculated for half, third and quarter areas from the region of interest’s periphery.ResultsThe maximum and average intensity values along the nucleus were directly proportional to the LOCS III grade: The larger the LOCS III value, the larger maximum and average intensity ones. These metrics showed a positive and significant correlation with the LOCS grade: The larger the LOCS grade, the higher was percentage of opaque pixels along the cortex within the same mask’s size. This metric showed a significant correlation to the LOCS grade.ConclusionThe metrics used to assess nuclear opacities showed good correlation with the LOCS III. The percentage of opaque pixels showed to be a useful metric to measure objectively the severity of the cortical opacity. These metrics could be implemented in an algorithm to detect and grade lens opacities automatically and objectively.     

Home gardens in western Nepal: opportunities and challenges for on-farm management of agrobiodiversity

Home gardens are defined as a system of production of diverse crop plant species, which can be adjacent to household or slightly further away and is easily accessible. Species composition and management systems of Nepalese home gardens are poorly known. The study was conducted to develop an inventory on composition of crop species and varietal diversity to characterise the home gardens of Rupandehi and Gulmi of western Nepal, and to observe the species change over the time for last 10–15 years. Semi-structured Interviews, Direct Observation and Focus Group Discussions were employed to collect primary data. Shannon–Weaver index (SWI) was used to determine the species richness. Principal Component Analysis (PCA) was employed to characterise the home gardens. Mid-hill SWI (H′ = 4.41) revealed the higher species diversity (131 species) as compared to terai (123 species). This species richness was significantly higher (p = 0.001) in the mid-hill area. The vegetable species constitute the major component followed by fruits and fodder species that also contributed to the species diversity. The size of home gardens and species richness was positively correlated (r _s = 0.29, p = 0.001). Twenty crop species have been lost during the last 10–15 years and eleven species were threatened in the studied home gardens. Inaccessibility of local seed crops and deforestation were the major causes reported accounting for this trend. Self-saved seed was the major source of planting material in home gardens. There is a need to study the seed supply system for these home gardens. Therefore, a challenge is to make these home gardens self-supporting through creating a mechanism on strengthening local seed supply systems for long term sustainability of home garden in agrobiodiversity management.     

High mtDNA haplotype diversity among introduced Swedish brown haresLepus europaeus

The brown hareLepus europaeus Pallas, 1778 occurs naturally in central Eurasia, but has been introduced to parts of northern Europe, South- and North America, Australia and New Zealand. Brown hares were introduced to Sweden from central Europe for hunting purposes during the 19th century. We investigated how the human--mediated brown hare colonisation of Sweden is reflected in the amount of genetic variation present by assessing variation and composition of mitochondrial DNA (mtDNA) lineages among Swedish brown hares. MtDNA from a total of 40 brown hare specimens from 15 localities were analysed for Restriction Fragment Length Polymorphisms. The haplotype diversity is surprisingly high (0.893 ± 0.002) when compared to the mtDNA diversity among brown hares on the European continent as well as to other mammalian species. Admixture of haplotypes from different source populations combined with a reduced effect of random genetic drift and a relaxed selection pressure due to rapid population growth after introduction are mechanisms that are likely to account for the observed high mtDNA haplotype diversity.     

Factors related to the occurrence of hybrids between brown hares Lepus europaeus and mountain hares L. timidus in Sweden

Hybridization occurs among many species, and may have implications for conservation as well as for evolution. Interspecific gene flow between brown hares Lepus europaeus and mountain hares L. timidus has been documented in Sweden and in continental Europe, and has probably to some extent occurred throughout history in sympatric areas. What local factors or ecological relationships that correlate with or trigger hybridization between these species has however been unclear. We studied spatial distribution of hybrids between brown hares and mountain hares in Sweden in relation to characteristics of the sampled localities (hunting grounds). In a sample of 70 brown hares collected from 39 populations in south‐central Sweden during 2003–2005, 11 (16%) showed introgressed mtDNA from mountain hares. Among the brown hares from their northern range, i.e. in general the most recent establishments, the corresponding figure was 75% (9/12). The frequency of samples with hybrid ancestry increased significantly with latitude, altitude and hilliness, and were higher (p<0.1) in recently established populations and/or where the proportion of arable land was low. Several site‐specific parameters were correlated, e.g. latitude as expected to hilliness, and no parameter explained the occurrence of hybrids exclusively. Instead, the appearance of mountain hare mtDNA among brown hares was associated with a conglomerate of parameters reflecting landscapes atypical for the brown hare, e.g. forest dominated and steep areas where the species quite recently was established. We suggest that these abiotic factors mirror the main aspect influencing hybridization frequency, namely the density or relative frequency of the two species. In atypical brown hare landscapes with recent establishment, mountain hares are probably relatively more common. When one species dominate in numbers, or when both species display low densities, increased frequency of hybridization is expected due to low availability of conspecific partners, a phenomenon referred to as Hubbs’ principle.     

Common household chemicals and the allergy risks in pre-school age children

Background

The risk of indoor exposure to volatile organic compounds (VOCs) on allergic airway diseases in children remains unknown.

Objective

We examined the residential concentrations of VOCs, emitted from building materials, paints, furniture, and other lifestyle practices and the risks of multiple allergic diseases as well as the IgE-sensitization in pre-school age children in Sweden.

Methods

In a case-control investigation (198 case children with asthma and allergy and 202 healthy controls), air samples were collected in the room where the child slept. The air samples were analyzed for the levels of eight classes of VOCs.

Results

A natural-log unit of summed propylene glycol and glycol ethers (PGEs) in bedroom air (equal to interquartile range, or 3.43 – 15.65 µg/m³) was associated with 1.5-fold greater likelihood of being a case (95% CI, 1.1 – 2.1), 1.5-fold greater likelihood of asthma (95% CI, 1.0 – 2.3), 2.8-fold greater likelihood of rhinitis (95% CI, 1.6 – 4.7), and 1.6-fold greater likelihood of eczema (95% CI, 1.1 – 2.3), accounting for gender, secondhand smoke, allergies in both parents, wet cleaning with chemical agents, construction period of the building, limonene, cat and dog allergens, butyl benzyl phthalate (BBzP), and di(2-ethylhexyl)phthalate (DEHP). When the analysis was restricted to the cases, the same unit concentration was associated with 1.8-fold greater likelihood of IgE-sensitization (95% CI, 1.1 – 2.8) compared to the non-IgE sensitized cases. No similar associations were found for the other classes of VOCs.

Conclusion

We propose a novel hypothesis that PGEs in indoor air exacerbate and/or induce the multiple allergic symptoms, asthma, rhinitis and eczema, as well as IgE sensitization respectively.