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Robert A. Laird 《Oikos》2014,123(4):472-480
The simplest example of non‐transitive competition is the game rock–paper–scissors (RPS), which exhibits characteristic cyclic strategy replacement: paper beats rock, which in turn beats scissors, which in turn beats paper. In addition to its familiar use in understanding human decision‐making, rock–paper–scissors is also played in many biological systems. Among other reasons, this is important because it potentially provides a mechanism whereby species‐ or strain coexistence can occur in the face of intense competition. Kerr et al. (2002, Nature 418: 171–174) use complementary experiments and simulations to show that RPS‐playing toxic, resistant, and susceptible E. coli bacteria can coexist when interactions between the strains are spatially explicit. This raises the question of whether limited interactions associated with space are sufficient to allow strain coexistence, or whether space per se is crucial. I approach this question by extending the Kerr et al. model to include different (aspatial) population network structures with the same degree distributions as corresponding spatial lattice models. I show that the coexistence that occurs for some parameter combinations when simulated bacterial strains compete on lattices is absent when they compete on random regular graphs. Further, considering small‐world networks of intermediate ‘quenched randomness’ between lattices and random regular graphs, I show that only small deviations from pure spatial interactions are sufficient to prevent strain coexistence. These results emphasize the explicit role of space, rather than merely limited interactions, as being decisive in allowing the coexistence of toxic, resistant, and susceptible strains in this model system. 相似文献
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Hyung W. Nam Caleb A. Grant Ashton N. Jorgensen Carrie J. Holtz‐Heppelmann Marjan Trutschl Urska Cvek 《Proteomics》2020,20(1)
Dysfunction of glutamate neurotransmission in the nucleus accumbens (NAc) has been implicated in the pathophysiology of alcohol use disorders (AUD). Neurogranin (Ng) is exclusively expressed in the brain and mediates N‐methyl‐d ‐aspartate receptor (NMDAR) hypo‐function by regulating the intracellular calcium‐calmodulin (Ca2+‐CaM) pathway. Ng null mice (Ng–/– mice) demonstrate increased alcohol drinking compared to wild‐type mice, while also showing less tolerance to the effect of alcohol. To identify the molecular mechanism related to alcohol seeking, both in vivo microdialysis and label‐free quantification proteomics comparing Ng genotype and effects of alcohol treatment on the NAc are utilized. There is significant difference in glutamate and gamma‐aminobutyric acid (GABA) neurotransmission between genotypes; however, alcohol administration normalizes both glutamate and GABA levels in the NAc. Using label‐free proteomics, 427 protein expression changes are identified against alcohol treatment in the NAc among 4347 total proteins detected. Bioinformatics analyses reveal significant molecular differences in Ng null mice in response to acute alcohol treatment. Ingenuity pathway analysis found that the AKT network is altered significantly between genotypes, which may increase the sensitivity of alcohol in Ng null mice. The pharmacoproteomics results presented here illustrate a possible molecular basis of the alcohol sensitivity through Ng signaling in the NAc. 相似文献
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Linda C. McCarthy Marie-Therese Bihoreau Susanna L. Kiguwa Julie Browne Takeshi K. Watanabe Haretsugu Hishigaki Atsushi Tsuji Susanne Kiel Caleb Webber Maria E. Davis Catherine Knights Angela Smith Ricky Critcher Patrick Huxtall James R. Hudson Jr. Toshihide Ono Hiroumi Hayashi Toshihisa Takagi Yusuke Nakamura Akira Tanigami Peter N. Goodfellow G. Mark Lathrop Michael R. James 《Mammalian genome》2000,11(9):791-795
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Blagg JA Noe MC Wolf-Gouveia LA Reiter LA Laird ER Chang SP Danley DE Downs JT Elliott NC Eskra JD Griffiths RJ Hardink JR Haugeto AI Jones CS Liras JL Lopresti-Morrow LL Mitchell PG Pandit J Robinson RP Subramanyam C Vaughn-Bowser ML Yocum SA 《Bioorganic & medicinal chemistry letters》2005,15(7):1807-1810
Through the use of computational modeling, a series of pyrimidinetrione-based inhibitors of MMP-13 was designed based on a lead inhibitor identified through file screening. Incorporation of a biaryl ether moiety at the C-5 position of the pyrimidinetrione ring resulted in a dramatic enhancement of MMP-13 potency. Protein crystallography revealed that this moiety binds in the S(1)(') pocket of the enzyme. Optimization of the C-4 substituent of the terminal aromatic ring led to incorporation of selectivity versus MMP-14 (MT-1 MMP). Structure activity relationships of the biaryl ether substituent are presented as is pharmacokinetic data for a compound that meets our in vitro potency and selectivity goals. 相似文献
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Letavic MA Axt MZ Barberia JT Carty TJ Danley DE Geoghegan KF Halim NS Hoth LR Kamath AV Laird ER Lopresti-Morrow LL McClure KF Mitchell PG Natarajan V Noe MC Pandit J Reeves L Schulte GK Snow SL Sweeney FJ Tan DH Yu CH 《Bioorganic & medicinal chemistry letters》2002,12(10):1387-1390
A series of novel, selective TNF-alpha converting enzyme inhibitors based on 4-hydroxy and 5-hydroxy pipecolate hydroxamic acid scaffolds is described. The potency and selectivity of TACE inhibition is dramatically influenced by the nature of the sulfonamide group which interacts with the S1' site of the enzyme. Substituted 4-benzyloxybenzenesulfonamides exhibit excellent TACE potency with >100x selectivity over inhibition of matrix metalloprotease-1 (MMP-1). Alkyl substituents on the ortho position of the benzyl ether moiety give the most potent inhibition of TNF-alpha release in LPS-treated human whole blood. 相似文献
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Mitochondrial DNA from Drosophila melanogaster 总被引:9,自引:0,他引:9
9.
Klei L Bacanu SA Myles-Worsley M Galke B Xie W Tiobech J Otto C Roeder K Devlin B Byerley W 《Human genetics》2005,117(4):349-356
We report on linkage analysis of a completely ascertained population of familial psychosis derived from the oceanic nation of Palau. Palau, an archipelago of islands in the Southern Pacific, currently has a population of approximately 23,000 individuals. The peoples of Palau populated these islands recently in human history, approximately 2,000 years ago. As both historical and genetic evidence suggest, the population is far more homogeneous than most other populations undergoing genetic studies, and should therefore prove quite useful for mapping genetic variants having a meaningful impact on susceptibility to psychotic disorders. Moreover, for our study, essentially all on-island schizophrenics (150) and individuals with other psychotic disorders (25) participated. By analysis of narrow (only schizophrenia) and broad (all psychosis) diagnostic schemes, two-point linkage analyses suggest that two regions of the genome harbor genetic variants affecting liability in most families, 3q28 (LOD=3.03) and 17q32.2 (LOD=2.80). Results from individual pedigrees also support 2q37.2, 2p14, and 17p13 as potentially harboring important genetic variants. Most of these regions have been implicated in other genetic studies of psychosis in populations physically quite distant from this Oceanic population, although some (e.g., 3q28) appear to be novel results for schizophrenia linkage analyses. 相似文献
10.
This paper presents a method for analysing longitudinal data when there are dropouts. In particular, we develop a simple method based on generalized linear mixture models for handling nonignorable dropouts for a variety of discrete and continuous outcomes. Statistical inference for the model parameters is based on a generalized estimating equations (GEE) approach (Liang and Zeger, 1986). The proposed method yields estimates of the model parameters that are valid when nonresponse is nonignorable under a variety of assumptions concerning the dropout process. Furthermore, the proposed method can be implemented using widely available statistical software. Finally, an example using data from a clinical trial of contracepting women is used to illustrate the methodology. 相似文献