Filtering rate of the cladoceran,Daphnia pulex as a function of body size,light and acclimation

Daphnia pulex were raised under nine light intensities (0, 1.7, 3.5, 7, 14, 28, 55, and 110 ft-c), polarized light (6.6 ft-c), and four wavelength ranges.Light intensity significantly affected the relationship between filtering rate and body size of unacclimated animals. The b values were lowest at 7 and 14 ft-c and they increased above 7 ft-c as light intensity increased. There were significant differences among b values and adjusted means for unacclimated animals. Acclimation to their respective conditions resulted in some significant differences between b values and adjusted means. For acclimated animals there were no significant differences among b values but there were some differences among adjusted means. The filtering rates of unacclimated and acclimated animals were lower at 14 ft-c while 1.7 and 3.5 ft-c were generally stimulatory and the effect was more pronounced in larger animals. Light intensities above 28 ft-c tended to suppress the filtering rate of small unacclimated animals and stimulate filtering rate in larger unacclimated animals. After acclimation, intensities above 7 ft-c did not affect the filtering rate of either small or large animals.The effect of polarized light on filtering rate was inseparable from the effect of light intensity, however, acclimation to polarized light resulted in a significantly higher b value.There were no significant effects of wavelength among b values for unacclimated animals and the adjusted mean for blue wavelengths was significantly higher than for violet wavelengths. There were no significant differences among b values or adjusted means for acclimated animals. Acclimation to their respective wavelengths did result in some significant differences between b values and adjusted means. Except for the effects of blue wavelengths on unacclimated animals and red wavelengths on acclimated animals, the effects of wavelengths are inseparable from the effects of light intensity.This paper is part of a Ph.D. Thesis submitted to the Faculty of Graduate School of The University of Kansas.Supported in part by a NSF Summer Traineeship and a grant from the Research Corporation to St. Olaf College, Northfield, Minnesota 55057.     

Isolation and characterization of plasma membrane-associated cortical granules from sea urchin eggs

Cortical granules, which are specialized secretory organelles found in ova of many organisms, have been isolated from the eggs of the sea urchins Arbacia punctulata and Strongylocentrtus pupuratus by a simple, rapid procedure. Electron micropscope examination of cortical granules prepared by this procedure reveals that they are tightly attached to large segments of the plasma membrane and its associated vitelline layer. Further evidence that he cortical granules were associated with these cell surface layers was obtained by (125)I-labeling techniques. The cortical granule preparations were found to be rich in proteoesterase, which was purified 32-fold over that detected in a crude homogenate. Similarly, the specific radioactivity of a (125)I-labeled, surface glycoprotein was increased 40-fold. These facts, coupled with electron microscope observations, indicate the isolation procedure yields a preparation in which both the cortical granules and the plasma membrane-vitelline layer are purified to the same extent. Gel electrophoresis of the membrane-associated cortical granule preparation reveals the presence of at least eight polypeptides. The major polypeptide, which is a glycotprotein of apparent mol wt of 100,000, contains most of the radioactivity introduced by (125)I-labeling of the intact eggs. Lysis of the cortical granules is observed under hypotonic conditions, or under isotonic conditions if Ca(2+) ion is present. When lysis is under isotonic conditions is induced by addition of Ca(2+) ion, the electron-dense contents of the granules remain insoluble. In contrast, hypotonic lysis results in release of the contents of the granule in a soluble form. However, in both cases the (125)I-labeled glycoprotein remains insoluble, presumably because it is a component of either the plasma membrane or the vitelline layer. All these findings indicate that, using this purified preparation, it should be possible to carry out in vitro studies to better define some of the initial, surface-related events observed in vivo upon fertilization.     

Aggregation-dependent turnover of flagellar adhesion molecules in chlamydomonas gametes

Previous studies on flagellar adhesion in chlamydomonas (Snell, W. and S. Roseman. 1979. J. Biol. Chem. 254:10820-10829.) have shown that as gametes adhere to flagella isolated from gametes of the opposite mating type, the adhsiveness of the added flagella but not of the gametes is lost. The studies reported here show that the addition of protein synthesis inhibitors (cycloheximide [CH] or anisomycin) to the medium of such cell- flagella mixtures causes the cells to lose their adhesiveness. This loss, however, occurs only after the cells have interacted with 4-8 flagella/cell and does not occur if the cells are kept in CH (7 h) without aggregating. The availability of an impotent (imp) mating type plus (MT(+)) mutant (provided by U.W. Goodenough), which adheres but is unable to undergo the fusion that normally follows adhesion, made it possible to determine whether a similar loss of adhesiveness occurs in mixtures of matting type minus (mt(-)) and imp mt(+) gametes. In the absence of inhibitor, mt(-) and imp mt(+) gametes adhered to each other (without fusing) for several hours; however, in the presence of CH or anisomycin, the gametes began to de-adhere 35 min after mixing, and, by 90 min, 100 percent of the cells were single again. This effect was reversible, and the rapid turnover of cells were single again. This effect was reversible, and the rapid turnover of molecules involved in adhesion occurred only during adhesion inasmuch as gametes pretreated for 4 h with CH were able to aggregate in CH for the same length of time as nonpretreated cells aggregated in CH. By the addition of CH at various times after the mt(-) and imp mt(+) gametes were mixed, measurements were made of the “pool size” of the molecules involved in adhesion. The pool reached a minimum after 25 min of aggregation, rapidly increased for the next 25 min, and then leveled off at the premixing level. These results suggest that flagellar adhesion in chlamydomonas causes modification of surface molecules (receptors, ligands), which brings about their inactivation and stimulates their replacement.     

Some effects of light on the energetics of Daphnia pulex and implications for the significance of vertical migration

Energy budgets were computed from data obtained for Daphnia pulex cultured under nine light intensities, polarized light and four wavelength ranges. The percent assimilation of preadult animals is highest at intensities above 7 ft-c. Net efficiency of growth was highest (> 50%) and the net efficiency of respiration was lowest ( < 49%) at intensities less than 28 ft-c. The percent assimilation of adult animals was highest ( > 10%) at 110, 55 and 14 ft-c. Under the nine intensities the gross efficiencies of growth were less than 1 % and net efficiencies of growth varied from 3.9 to 7.3%. Gross efficiencies of respiration were highest above 7 ft-c. The net efficiency of respiration usually varied between 20 and 30% and the lowest was 9.8% at 1.7 ft-c. and the highest was 50.1% at 110 ft-c. Gross efficiency of reproduction varied from 2.6% at 3.5 ft-c to 12.6% at 14 ft-c and generally varied between 4 and 7.5%. Net efficiency of reproduction varied from 45.9% at 110 ft-c to 84.3% at 1.7 ft-c and usually varied from 62 to 75% at other light intensities. The ratio of energy of respiration to energy of growth and reproduction ranged from 12% to 1.7 ft-c to 105.3% at 110 ft-c. This ratio usually varied from 25 to 34% at 14 ft-c or less and exceeded 37% at intensities above 14 ft-c. The percent assimilation (3.5%), gross (2.0%), and net (56.3%) efficiencies of respiration of preadult animals raised under polarized light were higher than for those at a similar, nonpolarized, intensity. The net efficiency of growth (43.7%) was lower under polarized light. The percent assimilation, gross efficiencies of growth, reproduction and respiration, net efficiencies of growth and reproduction of adult animals under polarized light (6.6 ft-c) were lower than for those under 7 ft-c. For preadult animals assimilation efficiencies were lower in wavelength treatments than in white light or darkness. The gross efficiencies of growth and respiration were lowest under red wavelengths and the net efficiencies of growth were lowest and respiration highest under green wavelengths. For adult animals, the assimilation efficiencies were lower in the wavelength treatments than those obtained in other light treatments. While the gross efficiencies of growth, reproduction and respiration were generally lower, the net efficiencies of growth and reproduction were generally within the range of values for other light conditions. The net efficiencies of respiration, except for red wavelengths, were lower than those for other light conditions except at 1.7 ft-c. The ratio of energy of respiration to energy of growth and reproduction showed similar trends. The effects of wavelength are generally separable from the effects of light intensity.     

Genes coding for hepatotoxic heptapeptides (microcystins) in the cyanobacterium Anabaena strain 90

The cluster of microcystin synthetase genes from Anabaena strain 90 was sequenced and characterized. The total size of the region is 55.4 kb, and the genes are organized in three putative operons. The first operon (mcyA-mcyB-mcyC) is transcribed in the opposite direction from the second operon (mcyG-mcyD-mcyJ-mcyE-mcyF-mcyI) and the third operon (mcyH). The genes mcyA, mcyB, and mcyC encode nonribosomal peptide synthetases (NRPS), while mcyD codes for a polyketide synthase (PKS), and mcyG and mcyE are mixed NRPS-PKS genes. The genes mcyJ, mcyF, and mcyI are similar to genes coding for a methyltransferase, an aspartate racemase, and a D-3-phosphoglycerate dehydrogenase, respectively. The region in the first module of mcyB coding for the adenylation domain was found to be 96% identical with the corresponding part of mcyC, suggesting a recent duplication of this fragment and a replacement in mcyB. In Anabaena strain 90, the order of the domains encoded by the genes in the two sets (from mcyG to mcyI and from mcyA to mcyC) is colinear with the hypothetical order of the enzymatic reactions for microcystin biosynthesis. The order of the microcystin synthetase genes in Anabaena strain 90 differs from the arrangement found in two other cyanobacterial species, Microcystis aeruginosa and Planktothrix agardhii. The average sequence match between the microcystin synthetase genes of Anabaena strain 90 and the corresponding genes of the other species is 74%. The identity of the individual proteins varies from 67 to 81%. The genes of microcystin biosynthesis from three major producers of this toxin are now known. This makes it possible to design probes and primers to identify the toxin producers in the environment.     

Heterocyst-specific expression of patB,a gene required for nitrogen fixation in Anabaena sp. strain PCC 7120

The patB gene product is required for growth and survival of the filamentous cyanobacterium Anabaena sp. strain PCC 7120 in the absence of combined nitrogen. A patB::gfp fusion demonstrated that this gene is expressed exclusively in heterocysts. patB mutants have a normal initial pattern of heterocyst spacing along the filament but differentiate excess heterocysts after several days in the absence of combined nitrogen. Expression of hetR and patS, two critical regulators of the heterocyst development cascade, are normal for patB mutants, indicating that patB acts downstream of them in the differentiation pathway. A patB deletion mutant suffers an almost complete cessation of growth and nitrogen fixation within 24 h of combined nitrogen removal. In contrast, a new PatB mutant that is defective in its N-terminal ferredoxin domain, or a previously described mutant that has a frameshift removing its C-terminal helix-turn-helix domain, grows very slowly and differentiates multiple contiguous heterocysts under nitrogen-deficient conditions.     

Effect of paracetamol (acetaminophen) and ibuprofen on body temperature in acute ischemic stroke PISA, a phase II double-blind, randomized, placebo-controlled trial [ISRCTN98608690]

Background

Body temperature is a strong predictor of outcome in acute stroke. In a previous randomized trial we observed that treatment with high-dose acetaminophen (paracetamol) led to a reduction of body temperature in patients with acute ischemic stroke, even when they had no fever. The purpose of the present trial was to study whether this effect of acetaminophen could be reproduced, and whether ibuprofen would have a similar, or even stronger effect.

Methods

Seventy-five patients with acute ischemic stroke confined to the anterior circulation were randomized to treatment with either 1000 mg acetaminophen, 400 mg ibuprofen, or placebo, given 6 times daily during 5 days. Treatment was started within 24 hours from the onset of symptoms. Body temperatures were measured at 2-hour intervals during the first 24 hours, and at 6-hour intervals thereafter.

Results

No difference in body temperature at 24 hours was observed between the three treatment groups. However, treatment with high-dose acetaminophen resulted in a 0.3°C larger reduction in body temperature from baseline than placebo treatment (95% CI: 0.0 to 0.6 °C). Acetaminophen had no significant effect on body temperature during the subsequent four days compared to placebo, and ibuprofen had no statistically significant effect on body temperature during the entire study period.

Conclusions

Treatment with a daily dose of 6000 mg acetaminophen results in a small, but potentially worthwhile decrease in body temperature after acute ischemic stroke, even in normothermic and subfebrile patients. Further large randomized clinical trials are needed to study whether early reduction of body temperature leads to improved outcome.     

Evolutionary distances for protein-coding sequences: modeling site- specific residue frequencies

Estimation of evolutionary distances from coding sequences must take into account protein-level selection to avoid relative underestimation of longer evolutionary distances. Current modeling of selection via site-to-site rate heterogeneity generally neglects another aspect of selection, namely position-specific amino acid frequencies. These frequencies determine the maximum dissimilarity expected for highly diverged but functionally and structurally conserved sequences, and hence are crucial for estimating long distances. We introduce a codon- level model of coding sequence evolution in which position-specific amino acid frequencies are free parameters. In our implementation, these are estimated from an alignment using methods described previously. We use simulations to demonstrate the importance and feasibility of modeling such behavior; our model produces linear distance estimates over a wide range of distances, while several alternative models underestimate long distances relative to short distances. Site-to-site differences in rates, as well as synonymous/nonsynonymous and first/second/third-codon-position differences, arise as a natural consequence of the site-to-site differences in amino acid frequencies.