Ancient paralogy in the cpDNA trnL-F region in Annonaceae: implications for plant molecular systematics

The plastid trnL-F region has proved useful in molecular phylogenetic studies addressing diverse evolutionary questions from biogeographic history to character evolution in a broad range of plant groups. An important assumption for phylogenetic reconstruction is that data used in combined analyses contain the same phylogenetic signal. The trnL-F region is often used in combined analyses of multiple chloroplast markers. These markers are assumed to contain congruent phylogenetic signal due to lack of recombination. Here we show that trnL-F sequences display a phylogenetic signal conflicting with that of other chloroplast markers in Annonaceae, and we demonstrate that this conflict results from ancient paralogy. TrnL-F copy 2 diverged from trnL-F copy 1 (as used in family-wide phylogenetic analyses) in a direct ancestor of the Annonaceae. Although this divergence dates back 88 million years or more, the exons of both copies appear to be intact. In this case, assuming that (putative) chloroplast markers contain the same phylogenetic signal results in an incorrect topology and an incorrect estimate of ages. Our study demonstrates that researchers should be cautious when interpreting gene phylogenies, irrespective of the genome from which they are presumed to have been sampled.     

Nitrification rates in the lower river Rhine as a monitor for ecological recovery

The rate of in situ nitrification was tested as an indicator of the toxicological quality of the river Rhine. Concentration changes of ammonium ions over 85 to 133 km long reaches of three river branches downstream of the densely populated Ruhr-area (F.R.G.) were calculated from a data base for the period 1972 to 1986. Concentrations of ammonium in the river exceeded values of 1 mg N/l in winter. Because of the very high input of ammonium, bacterial nitrification dominated over other nitrogen processes. Relative rates of nitrification in the three river branches were proportional to the water temperature for the individual years. Nitrification rates in the river increased by a factor of ca. 4 during the period of 1972 to 1986. Toxic substances, whose concentrations decreased in the same period of time, were proposed as inhibitors of in situ nitrification rather than e.g. a low oxygen saturation of the water. The improvement of the conditions in the river, indicated by the in situ rate of nitrification, was also documented by data on macrofauna and fish populations.     

Pollen morphology within the Monodora clade,a diverse group of five African Annonaceae genera

Pollen morphology has played a major role in elucidating infrafamiliar‐level systematics and evolution within Annonaceae, especially within the African genera. The Monodora clade is composed of five genera, Asteranthe, Hexalobus, Isolona, Monodora and Uvariastrum, which are restricted to Africa and contain together c. 50 species. A molecular phylogeny of the family showed that the monophyly of the Monodora clade is strongly supported and that it is part of a larger clade of 11 African genera. In order to support classification a detailed survey was made of the pollen morphological variation within the Monodora clade, using scanning and transmission electron microsopy. For the two most species‐rich genera, Isolona and Monodora, a molecular species‐level phylogeny was used to assess the taxonomic usefulness of the pollen characters. The survey showed a wide range of pollen morphological diversity. The most conspicuous variation concerned the occurrence of monads without a thicker outer foliation in the basal exine layer in Isolona in contrast to tetrads with a thicker outer foliation in Asteranthe, Hexalobus, Monodora and Uvariastrum. At the infrageneric level, Hexalobus, Isolona and Monodora showed the largest diversity, with various pollen types based on tectum morphology. Hexalobus is exceptional with three types within only five species. The pollen types defined in this study are hardly useful in characterizing major groups identified within both Isolona and Monodora, but they do illustrate relationships within smaller groups.     

Comparison of nitrification rates in three branches of the lower river Rhine

The nitrogen cycle in the lower river Rhine was analysed, using data on concentrations of ammonium, nitrite and nitrate, measured in the period from 1972 to 1986. The massive discharge of ammonium in densely populated areas in the Federal Republic of Germany led to microbial nitrification, detectable as decreases in ammonium and nitrite concentrations in the lower river Rhine over reaches 85–133 km long. The distribution of the nitrogen-rich Rhine waters over three different branches in the Netherlands permits some of the factors governing microbial nitrification in the river bed to be discriminated. In the fast-flowing main channel, intensively used by ships, nitrification is more important than in the smaller branches, despite the short residence time of the water in the main channel. Differences in the flow rate of water, in grain size distribution of sediments, and in intensity of shipping (aeration, turbulence) seemed to be responsible for the different rates of nitrification.