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Hatchery selection promotes boldness in newly hatched brown trout (Salmo trutta): implications for dominance 总被引:2,自引:0,他引:2
Sundstrom L. Fredrik; Petersson Erik; Hojesjo Johan; Johnsson Jorgen I.; Jarvi Torbjorn 《Behavioral ecology》2004,15(2):192-198
By using newly hatched (approximately 2 weeks old) brown trout(Salmo trutta) from six families of wild and six families ofsea-ranched origin (seventh generation), we tested the hypothesesthat (1) the hatchery environment selects for increased boldness,and (2) boldness predicts dominance status. Sea-ranched troutspend their first 2 years in the hatchery before being releasedinto the wild at the onset of seaward migration. Trout werepresented with a novel object (tack) and with food (brine shrimp),and their responses were measured and scored in terms of boldness.Siblings with increasing difference in boldness were then pairedin dyadic contests. Fish of sea-ranged origin were on averagebolder than were fish of wild origin, and bolder individualswere more likely to become dominant regardless of origin. Boldnesswas not related to RNA levels, indicating that bold behaviorwas not a consequence of higher metabolism or growth rate. Neitherwas size a predictor of bold behavior or the outcome of dyadiccontests. These results are consistent with studies on olderlife stages showing increased boldness toward predators in hatchery-selectedfish, which suggests that behavioral consequences of hatcheryselection are manifested very early in life. The concordancebetween boldness and dominance may suggest that these behaviorsare linked in a risk prone-aggressive phenotype, which may bepromoted by hatchery selection. However, we also found significantvariation in behavioral and growth-related traits among families,suggesting that heritable variation has not been exhausted bysea-ranching procedures. 相似文献
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Linda K. Petersson Daniel C. Dey Annika M. Felton Emile S. Gardiner Magnus Lf 《Ecology and evolution》2020,10(5):2626-2637
Failed oak regeneration is widely reported in temperate forests and has been linked in part to changed disturbance regimes and land‐use. We investigated if the North American fire–oak hypothesis could be applicable to temperate European oaks (Quercus robur, Quercus petraea) using a replicated field experiment with contrasting canopy openness, protection against ungulate browsing (fencing/no fencing), and low‐intensity surface fire (burn/no burn). Survival, relative height growth (RGRH), browsing damage on naturally regenerated oaks (≤300 cm tall), and changes in competing woody vegetation were monitored over three years. Greater light availability in canopy gaps increased oak RGRH (p = .034) and tended to increase survival (p = .092). There was also a trend that protection from browsing positively affected RGRH (p = .058) and survival (p = .059). Burning reduced survival (p < .001), nonetheless, survival rates were relatively high across treatment combinations at the end of the experiment (54%–92%). Most oaks receiving fire were top‐killed and survived by producing new sprouts; therefore, RGRH in burned plots became strongly negative the first year. Thereafter, RGRH was greater in burned plots (p = .002). Burning altered the patterns of ungulate browsing frequency on oaks. Overall, browsing frequency was greater during winter; however, in recently burned plots summer browsing was prominent. Burning did not change relative density of oaks, but it had a clear effect on competing woody vegetation as it reduced the number of individuals (p < .001) and their heights (p < .001). Our results suggest that young, temperate European oaks may respond similarly to fire as their North American congeners. However, disturbance from a single low‐intensity fire may not be sufficient to ensure a persistent competitive advantage—multiple fires and canopy thinning to increase light availability may be needed. Further research investigating long‐term fire effects on oaks of various ages, species‐specific response of competitors and implications for biodiversity conservation is needed. 相似文献
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Xylitol is the first rare sugar that has global markets. It has beneficial health properties and represents an alternative to current conventional sweeteners. Industrially, xylitol is produced by chemical hydrogenation of d-xylose into xylitol. The biotechnological method of producing xylitol by metabolically engineered yeasts, Saccharomyces cerevisiae or Candida, has been studied as an alternative to the chemical method. Due to the industrial scale of production, xylitol serves as an inexpensive starting material for the production of other rare sugars. The second part of this mini-review on xylitol will look more closely at the biotechnological production and future applications of the rare sugar, xylitol. 相似文献
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Bak Søren Kahn Rachel Alice Nielsen Hanne Linde Møller Birger Lindberg Halkier Barbara Ann 《Plant molecular biology》1998,36(3):393-405
A cDNA encoding the multifunctional cytochrome P450, CYP71E1, involved in the biosynthesis of the cyanogenic glucoside dhurrin from Sorghum bicolor (L.) Moench was isolated. A PCR approach based on three consensus sequences of A-type cytochromes P450 – (V/I)KEX(L/F)R, FXPERF, and PFGXGRRXCXG – was applied. Three novel cytochromes P450 (CYP71E1, CYP98, and CYP99) in addition to a PCR fragment encoding sorghum cinnamic acid 4-hydroxylase were obtained.Reconstitution experiments with recombinant CYP71E1 heterologously expressed in Escherichia coli and sorghum NADPH–cytochrome P450–reductase in L--dilaurylphosphatidyl choline micelles identified CYP71E1 as the cytochrome P450 that catalyses the conversion of p-hydroxyphenylacetaldoxime to p-hydroxymandelonitrile in dhurrin biosynthesis. In accordance to the proposed pathway for dhurrin biosynthesis CYP71E1 catalyses the dehydration of the oxime to the corresponding nitrile, followed by a C-hydroxylation of the nitrile to produce p-hydroxymandelonitrile. In vivo administration of oxime to E. coli cells results in the accumulation of the nitrile, which indicates that the flavodoxin/flavodoxin reductase system in E. coli is only able to support CYP71E1 in the dehydration reaction, and not in the subsequent C-hydroxylation reaction.CYP79 catalyses the conversion of tyrosine to p-hydroxyphenylacetaldoxime, the first committed step in the biosynthesis of the cyanogenic glucoside dhurrin. Reconstitution of both CYP79 and CYP71E1 in combination with sorghum NADPH-cytochrome P450–reductase resulted in the conversion of tyrosine to p-hydroxymandelonitrile, i.e. the membranous part of the biosynthetic pathway of the cyanogenic glucoside dhurrin. Isolation of the cDNA for CYP71E1 together with the previously isolated cDNA for CYP79 provide important tools necessary for tissue-specific regulation of cyanogenic glucoside levels in plants to optimize food safety and pest resistance. 相似文献
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Cytochromes P450 catalyse extremely diverse and often complex regiospecific and/or stereospecific reactions in the biosynthesis or catabolism of plant bioactive molecules. Engineered P450 expression is needed for low-cost production of antineoplastic drugs such as taxol or indole alkaloids and offers the possibility to increase the content of nutraceuticals such as phytoestrogens and antioxidants in plants. Natural products may serve important functions in plant defence and metabolic engineering of P450s is a prime target to improve plant defence against insects and pathogens. Herbicides, pollutants and other xenobiotics are metabolised by some plant P450 enzymes. These P450s are tools to modify herbicide tolerance, as selectable markers and for bioremediation. 相似文献
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Markus Leibeling Dennis C. Koester Martin Pawliczek Daniel Kratzert Birger Dittrich Daniel B. Werz 《Bioorganic & medicinal chemistry》2010,18(11):3656-3667
Herein we describe the synthesis of highly substituted chromans and isochromans using carbohydrates as starting materials. The key step of our synthetic approach is the annelation of the benzene moiety via a highly efficient Pd-catalyzed domino reaction. This powerful approach led to a small library of highly substituted chromans and isochromans by making use of a variety of different diynes and bromoglycals. We investigated several Pd-catalysts in order to improve the yields and to enlarge the scope of the domino reaction. Furthermore, we elucidated the mechanistic picture of the reaction with isotope-labelling experiments. Most probably the reaction proceeds via an oxidative addition followed by two carbopalladation steps and a final cyclization reaction. 相似文献
10.
Kim Kultima Anna Nilsson Birger Scholz Uwe L. Rossbach Maria F?lth Per E. Andrén 《Molecular & cellular proteomics : MCP》2009,8(10):2285-2295
The performances of 10 different normalization methods on data of endogenous brain peptides produced with label-free nano-LC-MS were evaluated. Data sets originating from three different species (mouse, rat, and Japanese quail), each consisting of 35–45 individual LC-MS analyses, were used in the study. Each sample set contained both technical and biological replicates, and the LC-MS analyses were performed in a randomized block fashion. Peptides in all three data sets were found to display LC-MS analysis order-dependent bias. Global normalization methods will only to some extent correct this type of bias. Only the novel normalization procedure RegrRun (linear regression followed by analysis order normalization) corrected for this type of bias. The RegrRun procedure performed the best of the normalization methods tested and decreased the median S.D. by 43% on average compared with raw data. This method also produced the smallest fraction of peptides with interblock differences while producing the largest fraction of differentially expressed peaks between treatment groups in all three data sets. Linear regression normalization (Regr) performed second best and decreased median S.D. by 38% on average compared with raw data. All other examined methods reduced median S.D. by 20–30% on average compared with raw data.Peptidomics is defined as the analysis of the peptide content within an organism, tissue, or cell (1–3). The proteome and peptidome have common features, but there are also prominent differences. Proteomics generally identifies proteins by using the information of biologically inactive peptides derived from tryptic digestion, whereas peptidomics tries to identify endogenous peptides using single peptide sequence information only (4). Endogenous neuropeptides are peptides used for intracellular signaling that can act as neurotransmitters or neuromodulators in the nervous system. These polypeptides of 3–100 amino acids can be abundantly produced in large neural populations or in trace levels from single neurons (5) and are often generated through the cleavage of precursor proteins. However, unwanted peptides can also be created through post-mortem induced proteolysis (6). The later aspect complicates the technical analysis of neuropeptides as post-mortem conditions increase the number of degradation peptides. The possibility to detect, identify, and quantify lowly expressed neuropeptides using label-free LC-MS techniques has improved with the development of new sample preparation techniques including rapid heating of the tissue, which prevents protein degradation and inhibition of post-mortem proteolytic activity (7, 8).It has been suggested by us (4, 5) and others (9) that comparing the peptidome between samples of e.g. diseased and normal tissue may lead to the discovery of biologically relevant peptides of certain pathological or pharmacological events. However, differences in relative peptide abundance measurements may not only originate from biological differences but also from systematic bias and noise. To reduce the effects of experimentally induced variability it is common to normalize the raw data. This is a concept well known in the area of genomics studies using gene expression microarrays (10–12). As a consequence, many methods developed for microarray data have also been adapted for normalizing peptide data produced with LC-MS techniques (10–16). Normally the underlying assumption for applying these techniques is that the total or mean/median peak abundances should be equal across different experiments, in this case between LC-MS analyses. Global normalization methods refer to cases where all peak abundances are used to determine a single normalization factor between experiments (13, 15, 16), a subset of peaks assumed to be similarly abundant between experiments (16) is used, or spiked-in peptides are used as internal standards. In a study by Callister et al. (14), normalization methods for tryptic LC-FTICR-MS peptide data were compared. The authors concluded that global or iterative linear regression works best in most cases but also recommended that the best procedure should be selected for each data set individually. Methods used for normalizing LC-MS data have been reviewed previously (14, 17, 18), but to our knowledge only Callister et al. (14) have used small data sets to systematically evaluate such methods. None of these studies have targeted data of endogenous peptides.In this study, the effects of 10 different normalization methods were evaluated on data produced by a nano-LC system coupled to an electrospray Q-TOF or linear trap quadrupole (LTQ)1 mass spectrometer. Normalization methods that originally were developed for gene expression data were used, and one novel method, linear regression followed by analysis order normalization (RegrRun), is presented. The normalization methods were evaluated using three data sets of endogenous brain peptides originating from three different species (mouse, rat, and Japanese quail), each consisting of 35–45 individual LC-MS analyses. Each data set contained both technical and biological replicates. 相似文献