Myokine IL-15 regulates the crosstalk of co-cultured porcine skeletal muscle satellite cells and preadipocytes

The present study was carried out to preliminarily reveal the underlying mechanisms of the co-culture system between porcine muscle satellite cells (SCs) and stromal-vascular cells (SVs). The two cell types were co-cultured to assess both proliferation and differentiation. Desmin and Pref-1 immunofluorescence staining technique were taken to identify the two types of isolated cells. The expression of specific marker genes Myogenin was up-regulated in SCs (P < 0.05) and the differentiation of SCs could be promoted when co-cultured with preadipocytes compared with the single-cultured control, while expression of c/EBPβ in SVs was down-regulated (P < 0.05) and the differentiation of preadipocytes could be inhibited. Furthermore, secretion of myokine IL-15 was markedly increased, as well as its gene and protein expression levels in co-culture supernatants. However, the secretion of adipokine leptin was significantly decreased. These findings demonstrate that myokines like IL-15 could facilitate the SCs’ differentiation while inhibit the SVs differentiation, and act as an important regulator of co-culture between muscle cells and adipocytes.     

TSNAdb: A Database for Tumor-specific Neoantigens from Immunogenomics Data Analysis

Tumor-specific neoantigens have attracted much attention since they can be used as biomarkers to predict therapeutic effects of immune checkpoint blockade therapy and as potential targets for cancer immunotherapy. In this study, we developed a comprehensive tumor-specific neoantigen database (TSNAdb v1.0), based on pan-cancer immunogenomic analyses of somatic mutation data and human leukocyte antigen (HLA) allele information for 16 tumor types with 7748 tumor samples from The Cancer Genome Atlas (TCGA) and The Cancer Immunome Atlas (TCIA). We predicted binding affinities between mutant/wild-type peptides and HLA class I molecules by NetMHCpan v2.8/v4.0, and presented detailed information of 3,707,562/1,146,961 potential neoantigens generated by somatic mutations of all tumor samples. Moreover, we employed recurrent mutations in combination with highly frequent HLA alleles to predict potential shared neoantigens across tumor patients, which would facilitate the discovery of putative targets for neoantigen-based cancer immunotherapy. TSNAdb is freely available at http://biopharm.zju.edu.cn/tsnadb.     

维生素C对嗜酸乳杆菌GIM1.208 β-葡萄糖苷酶激活效应及分子互作关系

【背景】研究发现维生素C(vitaminC,VC)对嗜酸乳杆菌GIM1.208β-葡萄糖苷酶(β-glucosidase, BGL)具有明显激活作用。【目的】探究VC对BGL的影响特性以及二者互作关系。【方法】通过对硝基苯酚法、电化学法、Zeta电位法及核磁共振氢谱法研究VC对BGL的活性影响及互作特性。【结果】VC对BGL催化底物活性具有明显促效作用,Km=1.167 mmol/L,Vmax随着VC浓度增大而增大;VC浓度为3.5%时酶活性达到最高;在VC浓度为3.5%、温度低于30℃时,酶活性受温度影响较小,VC对BGL具有良好的稳定作用,相对酶活保持在90%以上。VC与BGL结合,两者存在弱静电作用且两者的相互作用使得VC的电氧化反应变得更加容易,同时推测VC分子中乙二醇支链片段与BGL之间存在氢键作用。【结论】VC对BGL具有明显激活作用,试验探究了两者作用力类型及作用位点,为BGL应用及天然酶激活剂的高效利用提供设计理论参考。     

Detection and Quantification of Fusarium oxysporum f. sp. niveum Race 1 in Plants and Soil by Real-time PCR

Fusarium wilt caused by Fusarium oxysporum f. sp. niveum (Fon) is the most serious soil-borne disease in the world and has become the main limiting factor of watermelon production. Reliable and quick detection and quantification of Fon are essential in the early stages of infection for control of watermelon Fusarium wilt. Traditional detection and identification tests are laborious and cannot efficiently quantify Fon isolates. In this work, a real-time polymerase chain reaction (PCR) assay has been described to accurately identify and quantify Fon in watermelon plants and soil. The FONRT-18 specific primer set which was designed based on identified specific sequence amplified a specific 172 bp band from Fon and no amplification from the other formae speciales of Fusarium oxysporum tested. The detection limits with primers were 1.26 pg/μl genomic DNA of Fon, 0.2 pg/ng total plant DNA in inoculated plant, and 50 conidia/g soil. The PCR assay could also evaluate the relationships between the disease index and Fon DNA quantity in watermelon plants and soil. The assay was further used to estimate the Fon content in soil after disinfection with CaCN₂. The real-time PCR method is rapid, accurate and reliable for monitoring and quantification analysis of Fon in watermelon plants and soil. It can be applied to the study of disease diagnosis, plant-pathogen interactions, and effective management.     

篮状菌属微生物次级代谢产物研究进展

天然产物的主要来源之一是微生物,不同于其他的生物资源,真菌菌种相对容易选育和保藏、适应力较强,可通过大规模发酵获取产物,更具有利于自然资源的可持续发展性和利用价值。篮状菌（Talaromyces sp.）及其次级代谢产物在天然色素上的研究受到科学家的青睐,同时在食品、环境、农业和医药等方面发挥了重要作用,尤其是海洋来源的篮状菌及其次级代谢物表现出显著的生物活性,例如杀虫、抗肿瘤、抗菌、抗病毒等。近来研究表明,篮状菌次级代谢产物根据生物合成的方式可以分为六大类：萜类（terpenes）、生物碱类（fumiquinazolines）、聚酮类（polyketides）、聚酯类（lactones）、醌类（quinones）和甾体类（steroids）,这些活性物质对促进药物的先导物质挖掘与开发具有重要意义。本文通过对文献和资料的查阅,总结了近年来篮状菌及其次级代谢物的研究开发进展,希望为后续研究和应用提供参考。     

混合生物结皮对土壤养分的影响与群落结构之关联——以黄土丘陵区的生物结皮为例

自然条件下生物结皮是藻、藓及地衣等结皮类型以不同比例组成的混合群落,显著影响土壤养分含量,目前混合生物结皮对土壤养分的影响与其群落结构的关系尚不清楚,限制了混合生物结皮土壤养分的评估。为此,研究通过测定单一组成的藻结皮、藓结皮以及80%藻+20%藓、60%藻+40%藓、40%藻+60%藓和20%藻+80%藓4个不同藻藓比例的混合生物结皮土壤有机碳、全氮、全磷、速效磷、铵态氮和硝态氮含量,研究了混合生物结皮土壤养分与其群落结构之间的关联。结果显示：(1)藓结皮层土壤有机碳、全氮、速效磷、铵态氮和硝态氮含量显著高于藻结皮,分别高出166.4%、77.2%、55.1%、56.2%和42.2%。(2)藻藓混合生物结皮土壤有机碳、全氮、速效磷和铵态氮含量与组成和盖度等结构特征有关,可以通过单一类型生物结皮土壤养分含量与盖度加权预测混合生物结皮土壤养分储量。(3)混合生物结皮土壤有机碳、全氮、速效磷和铵态氮储量实测值(x)与预测值(y)拟合的线性函数分别为y=0.97x、y=0.96x、y=1.18x和y=0.92x。(4)混合生物结皮对全磷和硝态氮含量的影响与群落结构无关。生物结皮对下层0—5 ...     

A real-world exploratory study on the feasibility of vonoprazan and tetracycline dual therapy for the treatment of Helicobacter pylori infection in special populations with penicillin allergy or failed in previous amoxicillin-containing therapies

Background

The treatment of Helicobacter pylori (H. pylori) infection is a challenge for those who cannot use amoxicillin.

Objective

To evaluate the eradication rate and adverse effects of vonoprazan and tetracycline dual therapy as first-line and rescue treatment regimens used in special populations with penicillin allergy or failed in previous amoxicillin-containing therapies.

Design

Patients enrolled were those who were H. pylori-positive with selected conditions: (1) allergic to penicillin, either naïve to treatment or had failed before; or (2) failed in previous amoxicillin-containing therapies. All enrolled patients accepted 14-day vonoprazan and tetracycline dual therapy (VT dual therapy) as follows: vonoprazan (20 mg b.i.d.) and tetracycline (500 mg t.i.d. [body weight < 70 kg] or 500 mg q.i.d. [body weight ≥ 70 kg]). H. pylori status was evaluated by ¹³C-urease breath test 6 weeks after treatment. All adverse effects were recorded. Some patients underwent bacterial culture and antibiotic susceptibility testing.

Results

A total of 62 patients were enrolled; 18 of them received VT dual therapy as first-line treatment, 44 patients received VT dual therapy as rescue treatment. Overall, 58 of 62 patients achieved successful eradication (93.5%), while all involved (100%,18/18) succeeded in the first-line treatment group and 40 cases (90.9%, 40/44) succeeded in the rescue treatment group. Sixty-one (61/62, 98.4%) patients completed the whole course of treatment. Adverse events occurred in 6 patients (6/62, 9.7%), while one patient quit because of skin rash. All adverse effects were mild and relieved spontaneously after H. pylori treatment. Five patients achieved successful H. pylori culture, and all strains isolated were sensitive to tetracycline.

Conclusions

For the treatment of H. pylori infection in special populations with penicillin allergy or failed in previous amoxicillin-containing therapies, a 14-day vonoprazan and tetracycline dual therapy was effective and safe as first-line and rescue treatment in our study. Further study is warranted to verify its efficacy, especially for those who cannot use amoxicillin.     

UHRF1 is regulated by miR-124-3p and promotes cell proliferation in intrahepatic cholangiocarcinoma

Ubiquitin-like with PHD and ring finger domains 1 (UHRF1) is abnormally overexpressed in multiple cancers and closely correlated with tumor-promoting effects, such as high proliferation. However, how UHRF1 functions in intrahepatic cholangiocarcinoma (ICC) has not yet been determined. Herein, we found that UHRF1 is overexpressed in ICC tissues. Downregulated UHRF1 attenuated the transition of the G1/S cell cycle and then suppressed cell proliferation in vitro and tumor growth in vivo. Moreover, upstream regulators of the UHRF1 expression were predicted, and we found that direct binding of miR-124-3p inhibited the UHRF1 expression. Elevated miR-124-3p suppressed proliferation and led to the arrest of the cell cycle. Furthermore, the expression of UHRF1 was positively correlated with PCNA. Clinically, we showed that elevated UHRF1 was associated with poor prognosis, and served as an independent prognostic factor in ICC patients. Together, these findings demonstrate that UHRF1, regulated by miR-124-3p, acts as a tumor promoter by promoting cell proliferation in ICC.     

Changes and controlling factors of cropland soil organic carbon in North China Plain over a 30-year period

Plant and Soil - Try to detect the spatiotemporal dynamics and the controlling factors of soil organic carbon (SOC) in the North China Plain (NCP) over the last 30&nbsp;years: 1980s-2010s. We...     

三江源区生态系统和土壤保持服务对未来气候变化的响应特征

气候变化条件下的生态系统响应特征对生态系统服务的提升和生态环境保护具有重要意义。现有气候变化评估多以全球或区域大尺度研究为主,不适合局地小尺度。以2015年为基准,根据局地特征改进了综合顺序分类系统（CSCS）,模拟了未来不同温室气体排放模式下三江源地区自然植被分布,同时分析了植被覆盖度及土壤保持功能的时空变化。研究结果表明：①在2080年的不同排放情境下,三江源地区的降水和气温增长主要发生在生长季（5—9月）和半湿润地区,其中,高排放情境的增幅最大（42.21 mm和4.93℃）;②三江源地区潜在自然植被主要由草地转化为森林,植被覆盖度和土壤保持服务在不同排放情境下均呈现由西北向东南增加的趋势,与水热规律一致,其中高排放情境的增幅最大,低排放最小;③ 利用三江源地区原生裸地演替特点和多年NPP改进的CSCS模型,模拟精度提高了24%。研究成果为局地小尺度生态系统气候响应特征提供了必要的手段和规律认识。