In situ diel variation in gut pigment contents of Ceriodaphnia sp. in stratification and destratification periods

The short-term, in situ diel grazing of Ceriodaphnia sp. duringperiods of stratification and mixing was investigated usingthe technique of fluorimetric analysis of the gut pigments.There were considerable seasonal differences in feeding behaviourIn mixing, when the concentration of chlorophyll a in the watercolumn was high and Ceriodaphnia abundance was low, gut pigmentcontents showed clear diel variation patterns, probably dueto diel variations of the high values of feeding activity observedin the 24 hour cycle The maximum values were found at dawn.On the other hand, no diel variations in gut pigment were observedduring periods of stratification and while the amounts of pigmentsin the water and in the gut were very low, species abundancewas high. Taking into account the ambient conditions, the authorsdiscuss the possibility that the change of feeding of the Ceriodaphniasp. observed when the environment changed from a mixing periodto one of stratification represents a change from herbivorousto detritivorous behavior.     

Applications of monolithic silica capillary columns in proteomics

The use and applicability of silica based capillary monolithic reversed-phase columns in proteomic analysis has been evaluated by liquid chromatography-mass spectrometry (LC-MS). Chromatographic performance of the monolithic capillaries was evaluated with a tryptic digest of cytochrome C showing very good resolution and reproducibility in addition to the known advantages of a low pressure drop over a time period of 6 months. Monoliths were subsequently tested for their suitability to separate proteins and peptides from samples typically encountered in proteomic research such as in-gel digested tryptic peptide mixtures or fractions of proteolytically digested human serum. The monolithic capillaries also proved useful in the analysis of phospholipid species in bronchoalveolar lavage fluid. Compared to particle-filled conventional capillary columns, rapid and highly efficient separation of peptides and proteins was achieved using these bimodal pore size distribution columns, and good quality collision induced dissociation (CID) mass spectra were obtained on an ion trap mass spectrometer. These novel monolithic separation media are thus a promising addition to the methodological toolbox of proteomics research.     

Loss of pico- and nanoplankton cells during concentration by tangential flow filtration

The efficiency of a tangential flow filtration device to concentratepico- and nanoplankton particles in sea water uniformly overa range of concentrations was evaluated. To calculate the expenmentalrecovery rates for each concentration factor, we measured theincrease in chlorophyll concentration, number of total particles(Coulter counter) and number of autotrophic cells (flow cytometry).The experimental recovery rates for each stage of volume reductionin the concentration process were expressed as percentages ofthe expected theoretical values. Significant losses of cellularmaterial (low recovery rates) occurred between the retentateseawater tank and the seawater filtrate tank. Similar lossesoccurred in repetitive closed-circuit recirculation experimentswhen the circulating volume of sea water was kept constant.The cause of the apparent losses of material appeared to bemechanical fragmentation of organisms during the pumping andfiltering stages; however, experiments with latex beads showedthat most of the missing beads were retained within the filtrationelements. The low efficiencies and extremely varied recoveryrates of tangential flow filtrations measured under the experimentalconditions and for the different types of particles used inthis work preclude its use for quantitative concentrations ofnatural assemblages of particulate material in sea water.     

The structure of Bacillus subtilis RecU Holliday junction resolvase and its role in substrate selection and sequence-specific cleavage

We have determined the structure of the enzyme RecU from Bacillus subtilis, that is the general Holliday junction resolving enzyme in Gram-positive bacteria. The enzyme fold reveals a striking similarity to a class of resolvase enzymes found in archaeal sources and members of the type II restriction endonuclease family to which they are related. The structure confirms the presence of active sites formed around clusters of acidic residues that we have also shown to bind divalent cations. Mutagenesis data presented here support the key role of certain residues. The RecU structure suggests a basis for Holliday junction selectivity and suggests how sequence-specific cleavage might be achieved. Models for a resolvase-DNA complex address how the enzyme might organize junctions into an approximately 4-fold symmetric form.     

Annotated list of demersal fishes occurring at Sedlo Seamount, Azores north-east central Atlantic Ocean

Several fish surveys were carried out in recent years at Sedlo Seamount, Azores, north-eastern central Atlantic Ocean. An objective of the surveys was to determine the species composition of the demersal fish species living in the area. Four types of sampling gears (bottom trawl and three types of longline) were used at Sedlo Seamount resulting in very different species composition by gear and a very complete coverage of the fish fauna of the area. A list of fishes caught with these sampling methods is presented, along with other specific auxiliary information. Altogether 78 species from 43 families were listed for Sedlo Seamount, and as far as is known, 15 species were recorded for the first time for Azorean waters.     

Succession of bacterivorous protists on laboratory-made marine snow

Colonization and succession over time by bacterivorous protistson laboratory-made marine snow were analysed in five assaysduring 1994. Marine snow was made hom natural seawater usingrolling tanks. In all experiments, the macroaggregates werestable in size and consistency after the fourth day, and thecolonization and succession processes were similar. Newly formedmacre aggregates became colonized by heterotrophic nanoflagellateson the fourth day, mmt of them kinete plastids (Bodo designisand Rhynchomonns nasuta) and bicosoecids (Pseudobodo tremulansand Bicosoeca sp.). Sarcodines and ciliates appeared 1 day later.Among the former, the most abundant genus was Vannella sp.,while scuticociliates (Uronema marinum) and hypotrichs (Euplotesvannus and Aspidisca steini) were the most abundant ciliates.Most of the species observed in the study were more common tobenthic habitats than to pelagic ones. The planktonic existenceof the genera Bodo, Rhynchomonas, Bicosoeca, Euplotes and Aspidiscadepends on the presence of surfaces because they are poor swimmersor immotile, and Pseudobodo and Vannella need attachment forfeeding. The only pelagic protist observed was Uronema, probablybecause its opportunistic behaviour leads it to exploit enrichedenvironments such as marine snow. Flagellate and ciliate abundancesin laboratory-made macroaggregates were much higher than insurrounding water, which indicates that marine snow representsan enhanced habitat for protist growth.     

Patterns of investment in reproductive and somatic tissues in the loliginid squid <Emphasis Type="Italic">Loligo forbesii</Emphasis> and <Emphasis Type="Italic">Loligo vulgaris</Emphasis> in Iberian and Azorean waters

The veined squid, Loligo forbesii, is found throughout the northeast Atlantic, including the waters off the Iberian Peninsula, and is a socio-economically important cephalopod species, sustaining several small-scale commercial and local artisanal fisheries. This study uses Iberian and Azorean trawl survey and fishery landings data from 1990 to 1992 and employs additive modelling to examine the relationships amongst somatic growth, season and gonad growth, in an attempt to determine the relative importance of intrinsic (e.g. nutritional state and body size) and extrinsic (temperature and daylight) factors which contribute to maturation in L. forbesii. We compare the results with those from a comparative analysis of contemporaneous data on Loligo vulgaris from the Iberian coast, and with a re-analysis of previously published results for L. forbesii in Scottish waters. Reproductive organ weight in both sexes of L. forbesii from all ports shows seasonal patterns with a fall/winter peak in maturation, as is expected with the animals’ year-long life cycle. Two maturity peaks (spring and winter) were found for both Azores L. forbesii males and females, possibly evidence of two breeding cohorts, with males maturing approximately 1 month earlier than females in both seasons. For L. vulgaris, three annual peaks in reproductive weight were identified. With the exception of L. forbesii males from Scottish waters, in all study animals, the partial effect of mantle length and mantle weight on reproductive weight is positive up to large body sizes. The relationship between nutritional status and reproductive weight is also generally positive. Geographic variation in the relationships, as seen between Scottish males and samples from the other study areas, is hypothesised to be largely attributable to local differences in environmental conditions (productivity, food availability, temperature, upwelling), although differences between L. forbesii from the Azores, Scotland and mainland Europe may also relate to previously documented genetic differences.