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1.
mtDNA diversity in rhesus monkeys reveals overestimates of divergence time and paraphyly with neighboring species 总被引:4,自引:0,他引:4
Reconstructions of the human-African great ape phylogeny by using
mitochondrial DNA (mtDNA) have been subject to considerable debate. One
confounding factor may be the lack of data on intraspecific variation. To
test this hypothesis, we examined the effect of intraspecific mtDNA
diversity on the phylogenetic reconstruction of another Plio- Pleistocene
radiation of higher primates, the fascicularis group of macaque (Macaca)
monkey species. Fifteen endonucleases were used to identify 10 haplotypes
of 40-47 restriction sites in M. mulatta, which were compared with similar
data for the other members of this species group. Interpopulational,
intraspecific mtDNA diversity was large (0.5%- 4.5%), and estimates of
divergence time and branching order incorporating this variation were
substantially different from those based on single representatives of each
species. We conclude that intraspecific mtDNA diversity is substantial in
at least some primate species. Consequently, without prior information on
the extent of genetic diversity within a particular species, intraspecific
variation must be assessed and accounted for when reconstructing primate
phylogenies. Further, we question the reliability of hominoid mtDNA
phylogenies, based as they are on one or a few representatives of each
species, in an already depauperate superfamily of primates.
相似文献
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The main causes and degree of inaccuracy of air temperature reconstruction by the MCR method are discussed. This inaccuracy appears to result from several reasons: insufficient knowledge of geographic ranges of species, the use of calibration equations calculated for a different region, and the absence of generally accepted criteria for the selection of species to be used in MCR analysis, in relation to their distribution and ecological specificity. The maximum deviation of the reconstructed July temperature from the actual one was 2–4°C, which was 2–3 times the accepted MCR standard error. The requirements for selection of fossil species in order to improve the reconstruction accuracy are discussed. 相似文献
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Jane L Wagstaff Jonathan N Pruneda Stefan MV Freund David Komander 《The EMBO journal》2017,36(24):3555-3572
The Ser/Thr protein kinase PINK1 phosphorylates the well‐folded, globular protein ubiquitin (Ub) at a relatively protected site, Ser65. We previously showed that Ser65 phosphorylation results in a conformational change in which Ub adopts a dynamic equilibrium between the known, common Ub conformation and a distinct, second conformation wherein the last β‐strand is retracted to extend the Ser65 loop and shorten the C‐terminal tail. We show using chemical exchange saturation transfer (CEST) nuclear magnetic resonance experiments that a similar, C‐terminally retracted (Ub‐CR) conformation also exists at low population in wild‐type Ub. Point mutations in the moving β5 and neighbouring β‐strands shift the Ub/Ub‐CR equilibrium. This enabled functional studies of the two states, and we show that while the Ub‐CR conformation is defective for conjugation, it demonstrates improved binding to PINK1 through its extended Ser65 loop, and is a superior PINK1 substrate. Together our data suggest that PINK1 utilises a lowly populated yet more suitable Ub‐CR conformation of Ub for efficient phosphorylation. Our findings could be relevant for many kinases that phosphorylate residues in folded protein domains. 相似文献
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Aim To examine the issue of Beringian steppe-tundra from an entomological standpoint, using fossil beetle data collected from late Pleistocene sites.
Location North-eastern Siberia (Western Beringia), the Bering Land Bridge (Central Beringia), and Alaska and the Yukon Territory (Eastern Beringia).
Methods Analysis of habitat preferences of beetle species found in fossil assemblages, leading to classification of major habitat types characterized by the faunal assemblages.
Results Fossil beetle assemblages indicative of steppe-tundra are found mainly in the interior regions of Eastern Beringia, whereas these assemblages dominate nearly all late Pleistocene fossil sites in Western Beringia. Eastern Beringian faunas contain a much larger proportion of mesic to hygrophilous species and very few arid-habitat species. In contrast to this, the habitat requirements of the Western Beringian faunas are more evenly spread across the moisture spectrum.
Main conclusions The taxonomic patterns of the two sets of fossil assemblages are remarkably different. Eastern Beringian faunal assemblages contain substantial numbers of mesic tundra and riparian rove beetles (Staphylinidae); this element is almost entirely lacking in the Western Beringian fossil assemblages. Taphonomic bias tends to overemphasize moisture-loving species at the expense of dry, upland species in the fossil record. Both Western and Eastern Beringian landscapes undoubtedly contained mosaics of habitats ranging from dry uplands (steppe-tundra) through mesic tundra to bogs and riparian corridors. 相似文献
Location North-eastern Siberia (Western Beringia), the Bering Land Bridge (Central Beringia), and Alaska and the Yukon Territory (Eastern Beringia).
Methods Analysis of habitat preferences of beetle species found in fossil assemblages, leading to classification of major habitat types characterized by the faunal assemblages.
Results Fossil beetle assemblages indicative of steppe-tundra are found mainly in the interior regions of Eastern Beringia, whereas these assemblages dominate nearly all late Pleistocene fossil sites in Western Beringia. Eastern Beringian faunas contain a much larger proportion of mesic to hygrophilous species and very few arid-habitat species. In contrast to this, the habitat requirements of the Western Beringian faunas are more evenly spread across the moisture spectrum.
Main conclusions The taxonomic patterns of the two sets of fossil assemblages are remarkably different. Eastern Beringian faunal assemblages contain substantial numbers of mesic tundra and riparian rove beetles (Staphylinidae); this element is almost entirely lacking in the Western Beringian fossil assemblages. Taphonomic bias tends to overemphasize moisture-loving species at the expense of dry, upland species in the fossil record. Both Western and Eastern Beringian landscapes undoubtedly contained mosaics of habitats ranging from dry uplands (steppe-tundra) through mesic tundra to bogs and riparian corridors. 相似文献
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Background
The Evidence-Based Practice (EBP) Project has been investigating the implementation of evidence-based mental health practices (Assertive Community Treatment, Family Psychoeducation, Integrated Dual Diagnosis Treatment, Illness Management and Recovery, and Supported Employment) in state public mental health systems in the United States since 2001. To date, Project findings have yielded valuable insights into implementation strategy characteristics and effectiveness. This paper reports results of an effort to identify and classify state-level implementation activities and strategies employed across the eight states participating in the Project.Methods
Content analysis and Greenhalgh et al's (2004) definition of innovation were used to identify and classify state-level activities employed during three phases of EBP implementation: Pre-Implementation, Initial Implementation and Sustainability Planning. Activities were coded from site visit reports created from documents and notes from key informant interviews conducted during two periods, Fall 2002 – Spring 2003, and Spring 2004. Frequency counts and rank-order analyses were used to examine patterns of implementation activities and strategies employed across the three phases of implementation.Results
One hundred and six discreet implementation activities and strategies were identified as innovative and were classified into five categories: 1) state infrastructure building and commitment, 2) stakeholder relationship building and communications, 3) financing, 4) continuous quality management, and 5) service delivery practices and training. Implementation activities from different categories were employed at different phases of implementation.Conclusion
Insights into effective strategies for implementing EBPs in mental health and other health sectors require qualitative and quantitative research that seeks to: a) empirically test the effects of tools and methods used to implement EBPs, and b) establish a stronger evidence-base from which to plan, implement and sustain such efforts. This paper offers a classification scheme and list of innovative implementation activities and strategies. The classification scheme offers potential value for future studies that seek to assess the effects of various implementation processes, and helps establish widely accepted standards and criteria that can be used to assess the value of innovative activities and strategies. 相似文献8.
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Tal Burt Savita Dhillon Pooja Sharma Danish Khan Deepa MV Sazid Alam Sarika Jain Bhavana Alapati Sanjay Mittal Padam Singh 《PloS one》2013,8(7)