Anaerobic metabolism of Nitrosomonas europaea

Nitrosomonas europaea is capable of maintaining an anaerobic metabolism, using pyruvate as an electron donor and nitrite as an electron acceptor; utilization of nitrite depends upon supply of both pyruvate and ammonia. The role of ammonia in this reaction was not determined. N europaea also assimilates CO₂ anaerobically into cell material in the presence of nitrite (0.5–1.0 mM), pyruvate and ammonia. This reaction was partially inhibited by nitrite which apparently competed with CO₂ for reducing power. Anaerobic nitrite respiration is sensitive to ionophores, FCCP being the most effective.Non-standard-abbreviations TCA trichloroacetic acid - FCCP carbonylcyanide-p-trifluoromethoxyphenylhydrazon     

Diverse long terminal repeats are associated with murine retroviruslike (VL30) elements.

The VL30 family is a retroviruslike gene family with no apparent nucleic acid homology to any known retrovirus. Over 100 copies of VL30 DNA elements are dispersed throughout the mouse genome. Sequence analysis of the VL30 long terminal repeat (LTR) units showed that, whereas the LTR units of a given VL30 DNA element were almost identical, the LTR units associated with distinct members of the family were very different from one another. Comparison of the LTR sequences possessed by two particular VL30 DNA elements revealed a pattern of extensively homologous DNA segments adjacent to only distantly related DNA sequences. With the aid of sub-LTR probes, it was shown that a certain LTR is composed of both U5 sequences that are abundantly present in all species of the genus Mus and a U3 region detected only in Mus musculus. In addition, we isolated a VL30 DNA element in which the LTR units were replaced by the LTR units of an apparently novel retroviruslike family. These findings suggest that recombinations have played a role in generating the diverse population of VL30-associated LTRs.     

Inter-Individual Differences in Neurobehavioural Impairment following Sleep Restriction Are Associated with Circadian Rhythm Phase

Although sleep restriction is associated with decrements in daytime alertness and neurobehavioural performance, there are considerable inter-individual differences in the degree of impairment. This study examined the effects of short-term sleep restriction on neurobehavioural performance and sleepiness, and the associations between individual differences in impairments and circadian rhythm phase. Healthy adults (n = 43; 22 M) aged 22.5 ± 3.1 (mean ± SD) years maintained a regular 8:16 h sleep:wake routine for at least three weeks prior to laboratory admission. Sleep opportunity was restricted to 5 hours time-in-bed at home the night before admission and 3 hours time-in-bed in the laboratory, aligned by wake time. Hourly saliva samples were collected from 5.5 h before until 5 h after the pre-laboratory scheduled bedtime to assess dim light melatonin onset (DLMO) as a marker of circadian phase. Participants completed a 10-min auditory Psychomotor Vigilance Task (PVT), the Karolinska Sleepiness Scale (KSS) and had slow eye movements (SEM) measured by electrooculography two hours after waking. We observed substantial inter-individual variability in neurobehavioural performance, particularly in the number of PVT lapses. Increased PVT lapses (r = -0.468, p < 0.01), greater sleepiness (r = 0.510, p < 0.0001), and more slow eye movements (r = 0.375, p = 0.022) were significantly associated with later DLMO, consistent with participants waking at an earlier circadian phase. When the difference between DLMO and sleep onset was less than 2 hours, individuals were significantly more likely to have at least three attentional lapses the following morning. This study demonstrates that the phase of an individual’s circadian system is an important variable in predicting the degree of neurobehavioural performance impairment in the hours after waking following sleep restriction, and confirms that other factors influencing performance decrements require further investigation.     

H5-type influenza virus hemagglutinin is functionally recognized by the natural killer-activating receptor NKp44

Antiviral immune defenses involve natural killer (NK) cells. We previously showed that the NK-activating receptor NKp44 is involved in the functional recognition of H1-type influenza virus strains by NK cells. In the present study, we investigated the interaction of NKp44 and the hemagglutinin of a primary influenza virus H5N1 isolate. Here we show that recombinant NKp44 recognizes H5-expressing cells and specifically interacts with soluble H5 hemagglutinin. H5-pseudotyped lentiviral particles bind to NK cells expressing NKp44. Following interaction with target cells expressing H5, pseudotyped lentiviral particles, or membrane-associated H5, NK cells show NKp44-mediated induced activity. These findings indicate that NKp44-H5 interactions induce functional NK activation.     

Germination Studies ofLesquerella fendleri andL. gordonii,with reference to their cultivation

Seeds ofLesqurella spices are known to be dormant for five years and more. In oder to make cultivation ofL. fendleri andL. gordonii feasible germination studies were undertaken and practical applications of the results were investigated.     

Germination studies ofMolucella laevis

Seed of Molucella laevis (L.) was gathered in the years 1963-66 and germinated soon after harvest and at various intervals subsequently. All seeds showed dormancy on gathering. There was a noticeable fluctuation in the percentage of seeds germinating during storage. Dormancy persisted throughout the years of the experiment. It appears that a number of factors are operative in the inhibition of germination of M. laevis seeds. One factor is an inhibitor which may be adsorbed by active charcoal or heavy loam, involving some process which requires fluctuating temperature. Rupture of the seed-coat also improved the germination of dormant seed, and a subsequent water rinse for 24 hrs. further increased the percent of germinating seed. Immersion of the seed for 48 hrs. in gibberellic acid (G.A.), 400 ppm, greatly improved germination, but it did not completely overcome dormancy. The maximum effect (93% germinating seed) was obtained when seed pre-treated with G.A. was germinated on top of active charcoal. The optimal germination temperature was found to be a daily alternating one of 16 hrs. at 15°C and 8 hrs. at 30°C with light supplied at the latter temperature. Treated seed was sown in the screen house and found to develop normal plants and seed. The dormancy-breaking effect of G.A. lasts for at least 180 days. The fluctuations in germination of seed pre-treated with gibberellin were similar to those of the untreated ones. The effect of dormancy-breaking factors differed with year of gathering and date of application. Thus, M. laevis seeds display much heterogeneity in their germination potential.     

Activity of foot-and-mouth disease virus RNA-dependent RNA polymerase in vitro: inhibition by polyamines and poly(amino acid)s

Replication of foot-and-mouth disease virus RNA in vitro is inhibited by high concentrations of the following polyamines in decreasing order of effectiveness: putrescine, spermine, and cadaverine. The basic poly(amino acids), polylysine, polyornithine, and polyarginine, as well as the basic protein salmine, are several orders of magnitude more inhibitory than polyamines. The interaction between polyornithine and foot-and-mouth disease virus RNA and its inhibition of replicase activity are related to the ability of basic polypeptides to bind to the RNA template. The neutral polymer, polysarcosine, and the polyanions, polyglutamic acid and heparin sulfate, do not inhibit replication; however, both polyanions relieve the inhibition by polyamines and polyamino acids. The mode of inhibition by polyamines and poly(amino acids) and the antagonism by heparin is discussed.     

Questions of Methodology in Aristotle’s Zoology: A Medieval Perspective

During the Middle Ages Aristotle’s treatises were accessible to intellectuals via translations and commentaries. Among his works on natural philosophy, the zoological books received relatively little scholarly attention, though several medieval commentators carefully studied Aristotle’s investigations of the animal kingdom. Averroes completed in 1169 a commentary on an Arabic translation of Aristotle’s Parts of Animals and Generation of Animals. In 1323 Gersonides completed his supercommentary on a Hebrew translation of Averroes’ commentary. This article examines how these two medieval commentators interpret the first book of Aristotle’s Parts of Animals, at the center of which stand methodological questions regarding the study of animals. Aristotle’s discussion of classification is presented by Averroes and Gersonides in light of an epistemological debate concerning the requisite method for scientific inquiries and discoveries. Sense perception is contrasted with rational reasoning, and ultimately a combined method is proposed, sense perception maintaining supremacy. These commentators outline a clear link between the systematic arrangement of animal species as offered by Aristotle, and his subsequent logical demonstrations which, according to them, form the core of biological investigations.     

A novel endocytosis signal related to the KKXX ER-retrieval signal.

Membrane proteins often contain a sorting signal in their cytoplasmic tail that promotes their clustering into coated vesicles at a specific cellular site. ERGIC-53 contains a cytoplasmic ER-retrieval signal, KKFF. However, overexpressed ERGIC-53 is transported to the cell surface and rapidly endocytosed. Here we report that ERGIC-53 carries a previously undescribed endocytosis signal. Surprisingly, the signal was KKFF and like the ER-retrieval signal required a C-terminal position. In fact, the minimal consensus sequence determined by substitutional mutagenesis (K-K/R-F/Y-F/Y) was related to the ER-retrieval consensus (K-K-X-X). Furthermore, we provide evidence that internalization of VIP36, a protein that cycles between plasma membrane and Golgi, is mediated by a signal at its C-terminus that matches the internalization consensus sequence. The relatedness of the two signals suggests that coatomer-mediated retrieval of proteins may be mechanistically more related to clathrin-dependent sorting than previously anticipated.