The structure and evolution of the spider monkey delta-globin gene

We have isolated the delta-globin gene of the New-World spider monkey, Ateles geoffroyi, and compared its nucleotide sequence with those of other primate delta- and beta-globin genes. Among primate delta-globin genes, the rate of nonsynonymous substitutions is much less than the rate of synonymous substitutions. This suggests that primate delta- globin genes may remain under evolutionary conservation, perhaps because hemoglobin A2 has an as yet unknown physiological importance.      

Biochemical pathways in prokaryotes can be traced backward through evolutionary time

For the first time, a credible prokaryotic phylogenetic tree is being assembled by Woese and others using quantitative sequence analysis of oligonucleotides in the highly conservative rRNA. This provides an evolutionary scale against which the evolutionary steps that led to the arrangement and regulation of contemporary biochemical pathways can be measured. This paper presents an emerging evolutionary picture of aromatic amino acid biosynthesis within a large superfamily assemblage of prokaryotes that is sufficiently developed to illustrate a new perspective that will be applicable to many other biochemical pathways.      

The evolutionary history of the amylase multigene family in Drosophila pseudoobscura

In Drosophila pseudoobscura, the amylase (Amy) multigene family is contained within a series of inversions, or gene arrangements, on the third chromosome. The Standard (ST), Santa Cruz (SC), and Tree Line (TL) inversions are central to the phylogeny of arrangements, and have clusters of other arrangements derived from them. The gene arrangements belonging to each of these three clusters have a characteristic number of Amy genes, ranging from three in ST to two in SC to one in TL. This distribution pattern can reflect a history of either duplications or deletions, although the data available in the past did not permit a decision between these alternatives. We provide unambiguous evidence that three Amy genes were present before the divergence of the ST, SC, and TL arrangements. Thus, the current status of the Amy multigene family is the result of deletions in the TL and SC arrangements, which created three new pseudogenes: TL Amy2-psi, TL Amy3-psi, and SC Amy3- psi. Analysis of pseudogene sequences revealed that, in the SC and ST arrangements, pseudogene evolution has been retarded, most likely due to the homogenization effect of gene conversion. Finally, by determining the original copy number, we have reconstructed the evolutionary history of the Amy multigene family and linked it with the evolution of the central gene arrangements.      

USE OF SENSORY EVALUATION FOR MEASURING DEODORIZING EFFECTS OF AN AIR CONDITIONER

The application of sensory methodology for measuring deodorizing effect of an air conditioner equipped with electric plasma was introduced. Deodorizing effect was measured using chemical and sensory methods at different time (0, 30 and 60 min) and mode (control, blowing and cooling) of an air conditioner. Smoke from a roll of cigarette in a closed room was used as a source of odor and the concentrations of acetic acid and ammonia were measured as odorous chemical components. As one of the sensory methods triangle test was used and as a first step to obtain deodorizing effects by triangle test, the threshold of each panelist was obtained as the log dilution ratio of odor concentration at which the difference from odorless air was detected. The odor concentration at each time and mode was calculated using the threshold of the panel and the deodorizing effect was obtained on the basis of the odor concentration. In addition to a triangle test, scaling methods such as category scaling or magnitude estimation were used to measure deodorizing effect of an air conditioner. Deodorizing effects by scaling methods were calculated based on odor intensity with time at each mode. The regression analysis was done between the efficacy of deodorizing effect by sensory test and those by acetic acid and ammonia, the R² values of the regression equations for triangle test, category scale, and magnitude estimation were 0.84, 0.72 and 0.69, respectively. Deodorizing effect by triangle test explained the decrease of acetic acid and ammonia better than those by category scaling or magnitude estimation while high cost and time consuming labor involved in triangle tests reduced the merit. The results of this study demonstrated that various sensory methods could be used to measure deodorizing effect of air conditioners and further researches on fast and reliable methods are needed to establish the official procedures.     

The flight behaviour of individual passerine nocturnal migrants: A tracking radar study

Nocturnal passerine migrants were tracked with a small automatic tracking radar during spring migration in eastern New York. Climbing, descending and markedly non-linear tracks were selected for analysis because they may reveal relationships not evident in normal straight and level tracks. Climbing individuals ascended at 1 to 2 vertical metres per second by heading into the wind and increasing their ascent angles while air speed tended to remain constant. Within individual tracks, birds flew slower when flying downwind than when flying into the wind and changes in air speed were performed over periods of a few seconds. A small amount of data suggested that this behaviour did not occur under overcast skies. Both the direction and speed of the wind force were important in predicting air speed. Multiple regression analysis indicated that faster flying birds were more likely to fly in winds of high speed and at large angles into the wind.     

Wind drift,compensation, and the use of landmarks by nocturnal bird migrants

In this paper we describe fall nocturnal migration at three localities in eastern New York, one adjacent to the Hudson River, the other two 30 km to the west in a topographically more uniform area. Migrants at both study areas moved southwest in winds not out of the west and were, therefore, seemingly unaffected by the river. In west winds, however, birds away from the river moved south-southeast whereas those in the vicinity of the river flew a track west of south paralleling the river. In addition, a relative increase in the number of migrants along the river compared to away was observed in west winds as birds presumably became concentrated near the river. We conclude that on most autumn nights migrants passing through this area have a preferred track direction toward the southwest and in strong winds from the west and northwest they are drifted. Upon reaching the vicinity of the Hudson River, some birds alter their headings yielding a track direction that closely parallels the river resulting in at least a partial compensation for wind drift. No alternative hypothesis is consistent with all the data.     

Shoreline infrastructure degradation and increasing littoral naturalization accommodates juvenile fish and crab assemblages in heavily urbanized Upper New York Harbor

Many estuarine shorelines are influenced by urbanization. Extensive shoreline modification in Upper New York Harbor (UNYH) included port development, landfilling marshes, and armoring. Recent sedimentation in constructed shipping terminal embayments, abandonment of shoreline structure maintenance, subsequent recruitment of upland and intertidal vegetation, and restoration projects have naturalized some shorelines in this urban setting. We determined the species composition and relative abundance of fishes and crabs in shallow shoreline habitats in constructed embayments of UNYH with seine sampling to determine the potential for restoring similar isolated shallow water sites as functional habitats. Twenty‐seven identified species of fishes and crabs, including seasonally transient and resident marsh species, were represented in samples dominated by Menidia menidia, but marsh resident and coastal ocean species were also periodically abundant. Differences in assemblage structure among the sampled embayments as measured by principal components analysis were weak despite some differences in the slope and colonization of vegetation along shorelines. The mere presence of shallow shorelines was sufficient to recruit numerous species. Assemblage differences relative to a nearby relatively unaltered estuary revealed a lack of southern, warm affiliated species reflecting a natural clinal gradient. Marsh resident species dominated in UNYH, but not as strongly as at the reference estuary. Together with a previously published evaluation of life cycle connectivity for several sentinel species, this study shows that even small, isolated projects seeking to restore shallow shorelines add value to the estuarine landscape and are worth pursuing.     

Do surf zones in New Jersey provide “nursery” habitat for southern fishes?

The fishes of the energetic surf zone of exposed ocean beaches are poorly known, especially along the U.S. east coast. We investigated the role that surf zones in southern New Jersey have as habitat by describing the young-of-the-year fishes caught by seines within the surf zone from May through October in 1998, 1999, 2005 and 2006. In addition, we investigated the nursery role of these surf zones by examining abundance, growth, and inferred survival during the summer for the dominant locally (New Jersey) and southern (south of Cape Hatteras) spawned species. At least three southern species, i.e. bluefish Pomatomus saltatrix (Cohort I), white mullet Mugil curema, and Florida pompano Trachinotus carolinus successfully use New Jersey surf zones as nurseries during the summer. It is clear that bluefish (Cohort I) contributes to the adult population and it is likely for the other southern species. Ultimately, the nursery contribution of surf zones and other habitats at the northern limits of the range of southern species depends on whether surviving juveniles can successfully emigrate to overwinter habitats and complete their life history.     

The K+/H+ antiporter LeNHX2 increases salt tolerance by improving K+ homeostasis in transgenic tomato

The endosomal LeNHX2 ion transporter exchanges H⁺ with K⁺ and, to lesser extent, Na⁺. Here, we investigated the response to NaCl supply and K⁺ deprivation in transgenic tomato (Solanum lycopersicum L.) overexpressing LeNHX2 and show that transformed tomato plants grew better in saline conditions than untransformed controls, whereas in the absence of K⁺ the opposite was found. Analysis of mineral composition showed a higher K⁺ content in roots, shoots and xylem sap of transgenic plants and no differences in Na⁺ content between transgenic and untransformed plants grown either in the presence or the absence of 120 mm NaCl. Transgenic plants showed higher Na⁺/H⁺ and, above all, K⁺/H⁺ transport activity in root intracellular membrane vesicles. Under K⁺ limiting conditions, transgenic plants enhanced root expression of the high‐affinity K⁺ uptake system HAK5 compared to untransformed controls. Furthermore, tomato overexpressing LeNHX2 showed twofold higher K⁺ depletion rates and half cytosolic K⁺ activity than untransformed controls. Under NaCl stress, transgenic plants showed higher uptake velocity for K⁺ and lower cytosolic K⁺ activity than untransformed plants. These results indicate the fundamental role of K⁺ homeostasis in the better performance of LeNHX2 overexpressing tomato under NaCl stress.