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FRAUKE M. MUENZEL MATTHIAS SANETRA WALTER SALZBURGER AXEL MEYER 《Molecular ecology resources》2007,7(6):1048-1050
Eleven microsatellites were isolated from the vairone Leuciscus souffia (Risso 1826), an endangered fish that inhabits river systems in and around the Alps in Europe. The level of genetic diversity was assessed in 29 individuals of the subspecies L. s. souffia, and their variability was further estimated in seven individuals of a different subspecies, L. s. muticellus. Eight of these microsatellite loci were also applied to seven closely related cyprinid species. Availability of the reported microsatellite loci will facilitate the investigation of population genetic structure of these species with applications for the development of conservation strategies and phylogeographical approaches. 相似文献
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Ecological and evolutionary consequences of the trophic polymorphism in Cichlasoma citrinellum (Pisces: Cichlidae) 总被引:1,自引:0,他引:1
The neotropical cichlid fish Cichlasoma citrinellum is polymorphic in the structure of its pharyngeal jaw apparatus and external morphology. The pharyngeal jaws are either gracile and bear slender, pointed teeth (papilliform) or robust with strong, rounded teeth (molariform). Molariform morphs have a ‘benthic’, and papilliform morphs a ‘limnetic’ body form. Furthermore, this species is also polychromatic, with yellow and black morphs. The molariform morphology of the pharyngeal jaw apparatus adapts the fish for cracking and feeding on snails. Based on analysis of stomach contents, 94% of the molariform morph ate snails whereas only 19%, of the papilliform morph did so. This result suggests that the morphs occupy different ecological niches. The morphology of the pharyngeal jaw apparatus does not correlate significantly with sex, but it does with body colouration (P<0.005). Cichlasoma citrinellum mate assortatively with their own colour; therefore a mating preference for colour may lead to genetic isolation of trophic morphs. The frequency of the molariform morph differs strikingly among populations of five Nicaraguan lakes and its abundance is correlated with the abundance of snails, the fishes' principal prey item. Among populations the frequency of molariform morphs decreases in the dry season. Morphology possibly changes reversibly within particular individuals between seasons. These results suggest that phenotypic plasticity and polymorphisms may be an adaptive characteristic of cichlid fishes. Patterns of intraspecific morphological variation match patterns of interspecific morphological diversification which suggests that universal developmental mechanisms canalize the possible expressions of morphology. The ability to respond morphologically to environmental shifts, in conjunction with genetically determined trophic polymorphisms and sexual selection via mate choice, could be the basis for speciation through intermediate stages of polymorphism of the impressive adaptive radiation of cichlid fishes. 相似文献
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HILDEGARD WESTPHAL AXEL MUNNECKE MARCO BRANDANO 《Lethaia: An International Journal of Palaeontology and Stratigraphy》2008,41(4):461-476
Since the establishment of astrochronology, calcareous rhythmites are frequently used as the basis of high‐resolution chronostratigraphy. In particular for the Neogene, calcareous rhythmites serve as stratotypes and for absolute dating of stratigraphic boundaries (Global Stratotype Sections and Points – GSSPs). However, the exact mechanisms responsible for the formation of the rhythmic intercalation of lithologies in such successions are complex and not easily reconstructed. To a large extent this is the effect of diagenetic modifications of the original sediment. Here, two examples of Neogene calcareous rhythmites are studied; the Monte dei Corvi section and the Monte Gibliscemi section. The first is the GSSP location of the Serravallian–Tortonian boundary, whereas the second is an auxiliary stratotype for the same boundary. During the past years, astrochronological approaches were applied to these successions to considerably increase time resolution compared to the elaborated biostratigraphic database. The present study focuses on micropetrographic, trace element and clay mineralogical methods in order to gain a better understanding of the genesis of the rhythmites. In the Monte Gibliscemi section, sediment parameters that are robust against diagenetic change clearly reflect primary differences, i.e. cyclical environmental changes. In contrast, no clear primary signal is determined for the Monte dei Corvi section on a couplet scale, leaving the origin of the rhythm ambiguous. This impedes the interpretation of the latter and the comparability between the two successions, and also compromises any bed‐by‐bed correlation between the two. The unclear origin of the rhythmites of Monte dei Corvi introduces uncertainty into the applicability of astrochronology to this succession. 相似文献
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MIGUEL VENCES STEFAN WANKE DAVID R. VIEITES WILLIAM R. BRANCH FRANK GLAW AXEL MEYER 《Biological journal of the Linnean Society. Linnean Society of London》2004,83(1):115-130
Several house gecko species of the genus Hemidactylus are almost cosmopolitan lizards, with distributions that have probably been shaped by natural transoceanic dispersal as well as by more recent human introductions. Here we revise the Hemidactylus populations of Madagascar and compare them genetically with populations from other sites in the Indian Ocean region. Morphological data strongly confirm the occurrence of three Hemidactylus species on Madagascar: Hemidactylus frenatus , distributed along the western coast of Madagascar; H. platycephalus , restricted to the north-west and the widespread H. mercatorius that occurs throughout the island, including coastal areas at sea level as well as big cities (Antananarivo, Fianarantsoa) at altitudes of 1200–1300 m above sea level. Analyses of partial sequences of the 16S rRNA gene in 46 Hemidactylus specimens from Madagascar, East Africa, South Asia, and the Comoro and Mascarene archipelagos demonstrated the presence of a fourth species, H. brooki, on the Mascarenes (Réunion, Rodrigues, and Mauritius) and Comoros (Moheli). The Malagasy populations of H. platycephalus were genetically uniform and differentiated from the African and Comoroan specimens studied. H. frenatus had a relatively low genetic differentiation over the whole region with no recognizable phylogeographical structure, indicating more recent colonizations or introductions. In contrast, H. mercatorius showed a strong phylogeographical structure of haplotypes, with two distinctly different lineages in Madagascar. Moreover, all Malagasy specimens differed strongly from the single African specimen included. This indicates that populations of H. mercatorius in Madagascar have a long history that predates human settlement. © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 83 , 115–130. 相似文献
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We developed 21 polymorphic dinucleotide microsatellite loci, (CA)n and (CT)n, for the Holarctic freshwater fish, Lota lota, using an enriched genomic library protocol. The species has an interesting life history because winter‐spawning adults migrate over long distances to form spawning aggregations, a behaviour which should maintain genetic homogeneity across large spatial scales. Availability of the reported microsatellites will facilitate the investigation of population genetic structure with regard to postglacial colonization history and conservation strategies. The primers were screened on 30 individuals from a natural population (Lake Constance, southern Germany), revealing three to 24 alleles per locus with expected heterozygosities ranging from 0.48 to 0.93. 相似文献
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Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data
MARC LOHSE AXEL NAGEL THOMAS HERTER PATRICK MAY MICHAEL SCHRODA RITA ZRENNER TAKAYUKI TOHGE ALISDAIR R. FERNIE MARK STITT BJÖRN USADEL 《Plant, cell & environment》2014,37(5):1250-1258
Next‐generation technologies generate an overwhelming amount of gene sequence data. Efficient annotation tools are required to make these data amenable to functional genomics analyses. The Mercator pipeline automatically assigns functional terms to protein or nucleotide sequences. It uses the MapMan ‘BIN’ ontology, which is tailored for functional annotation of plant ‘omics’ data. The classification procedure performs parallel sequence searches against reference databases, compiles the results and computes the most likely MapMan BINs for each query. In the current version, the pipeline relies on manually curated reference classifications originating from the three reference organisms (Arabidopsis, Chlamydomonas, rice), various other plant species that have a reviewed SwissProt annotation, and more than 2000 protein domain and family profiles at InterPro, CDD and KOG. Functional annotations predicted by Mercator achieve accuracies above 90% when benchmarked against manual annotation. In addition to mapping files for direct use in the visualization software MapMan, Mercator provides graphical overview charts, detailed annotation information in a convenient web browser interface and a MapMan‐to‐GO translation table to export results as GO terms. Mercator is available free of charge via http://mapman.gabipd.org/web/guest/app/Mercator . 相似文献
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by GERARD J. M. VERSTEEGH† THOMAS SERVAIS MICHAEL STRENG‡ AXEL MUNNECKE§ DANIEL VACHARD 《Palaeontology》2009,52(2):343-348
Abstract: The terminology and grouping of spherical, calcareous microfossils of unknown biological affinity, usually referred to as calcispheres, are diffuse. The term calcispheres is inconsistently used, the morphological and taxonomical concepts are mostly ill-defined and a formal definition is lacking. To resolve this issue, we propose, in analogy with the erection of the Acritarcha for organic microfossils of unknown origin, a new group called Calcitarcha, including all calcareous microfossils with a central cavity for which the biological affinities remain unknown. 相似文献