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Genome-wide analysis of the SET DOMAIN GROUP family in grapevine 总被引:1,自引:0,他引:1
The SET DOMAIN GROUP (SDG) proteins represent an evolutionarily-conserved family of epigenetic regulators present in eukaryotes
and are putative candidates for the catalysis of lysine methylation in histones. Plant genomes analyses of this family have
been performed in arabidopsis, maize, and rice and functional studies have shown that SDG genes are involved in the control
of plant development. In this work, we describe the identification and structural characterization of SDG genes in the Vitis vinifera genome. This analysis revealed the presence of 33 putative SDG genes that can be grouped into different classes, as it has
been previously described for plants. In addition to the SET domain, the proteins identified possessed other domains in the
different classes. As part of our study regarding the growth and development of grapevine, we selected eight genes and their
expression levels were analyzed in representative vegetative and reproductive organs of this species. The selected genes showed
different patterns of expression during inflorescence and fruit development, suggesting that they participate in these processes.
Furthermore, we showed that the expression of selected SDGs changes during viral infection, using as a model Grapevine Leafroll
Associated Virus 3-infected symptomatic grapevine leaves and fruits. Our results suggest that developmental changes caused
by this virus could be the result of alterations in SDG expression. 相似文献
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Brunner RM Srikanchai T Murani E Wimmers K Ponsuksili S 《Molecular biology reports》2012,39(1):97-107
Six genes that were known to exhibit expression levels that are correlated to drip loss BVES, SLC3A2, ZDHHC5, CS, COQ9, and
EGFR have been for candidate gene analysis. Based on in silico analysis SNPs were detected, confirmed by sequencing, and used for genotyping. The SNPs were genotyped in about 1,800 animals
from six pig populations including commercial herds of Pietrain (PI) and German Landrace (DL), different commercial herds
of Pietrain × (German Large White × German Landrace) (PIF1(a/b/c)), and one experimental F2-population Duroc × Pietrain (DUPI). Comparative and genetic mapping established the location of BVES on SSC1, of SLC3A2 and
ZDHHC5 on SSC2, of CS on SSC5, of COQ9 on SSC6 and of EGFR on SSC9, respectively, coinciding with QTL regions for carcass
and meat quality traits. BVES, SLC3A2, and CS revealed association at least with drip loss and with several other measures
of water holding capacity (WHC). Moreover, COQ9 and EGFR were associated with several meat quality traits such as meat color
and/or thawing loss. This study reveals statistic evidence in addition to the functional relationship of these genes to WHC
previously evidenced by expression analysis. This study reveals positional and genetic statistical evidence for a link of
genetic variation at these loci or close to them and promotes those six candidate genes as functional and/or positional candidate
genes for meat quality traits. 相似文献