The DNA-1 like alphasatellites in association with the bipartite Mungbean yellow mosaic virus in natural infections

Yellow mosaic disease is the major limitation in the production of grain legumes in India. This disease is caused by bipartite begomovirus, Mungbean yellow mosaic virus. In addition to the bipartite genomic components, the yellow mosaic disease affected urdbean plants which contain satellite like DNA-1 component called as alphasatellites. The present study has been attempted to characterise the alphasatellites associated with Mungbean yellow mosaic virus. Nucleotide sequence analysis of alphasatellites showed 98% identity with Vernonia yellow vein Fijian alphasatellite, VYVFA (JF733780). Since the sequence identity is more than 98%, the threshold value for demarcation of alphasatellites species, the alphasatellites of the present study are named as Vernonia yellow vein Fijian alphasatellite. Comparison with other, alphasatellites shared 51–55% identity with alphasatellites associated with monopartite begomovirus and it shared only 41–42% identity with an unusual alphasatellites, DNA-2. This is the first report on characterisation of alphasatellites associated with Mungbean yellow mosaic virus.     

A portable,remote‐controlled nest‐box trap

Many researchers catch adult birds at nest boxes using a vertical prop that supports a horizontal flap that drops down when an adult enters to feed nestlings. Because the prop is visible, some birds may be too wary to enter nest boxes, or they may dislodge the prop when they lean in; either way, they are not captured. We describe a remote‐controlled nest‐box trap that has the advantages of portability and being invisible to adults delivering food to nestlings. A receiver is installed on the ceiling of a nest box, the receiver is connected to a spring‐loaded flap that is triggered remotely with a transmitter from > 30 m away, and the flap drops down to cover the box entrance. In 2017 and 2018, our remote‐controlled traps did not increase the likelihood of capturing female Tree Swallows (Tachycineta bicolor), but did improve the likelihood of capturing males. We captured 16 male Tree Swallows in 30 attempts (53.3%) using our remote‐controlled trap compared to only 41 captures of males in 139 attempts (29.5%) with prop traps. In addition, whereas prop traps required an average of ~ 50 min to capture adults in successful attempts, our trap required only ~ 25 min. These results suggest that the savings in time for field researchers using our remote‐controlled trap can be substantial, with the added ethical benefit of reducing the amount of time that nestlings are not being fed. Our remote‐controlled trap is also economical to construct, requiring ~ $60 USD for parts and < 3 h to build.     

ROSA26Flpo deleter mice promote efficient inversion of conditional gene traps in vivo

Gene trap mutagenesis in embryonic stem cells is an important tool to help elucidate gene function in current mouse mutagenesis efforts. Vector systems based on inversion of the gene trap module have recently been devised to allow for conditional mutagenesis. However, additional efforts are needed to improve this technology including improving the efficiency of site‐specific recombinases required to manipulate these conditional vectors in vivo. Here we describe a mouse line carrying the codon‐optimized FLP recombinase Flpo at the ROSA26 locus that functions at higher efficiency than a similar Flpe line in mediating the DNA inversion of a conditional gene trap cassette in vivo. genesis 48:603–606, 2010. © 2010 Wiley‐Liss, Inc.     

Phenotypic and Molecular Characterization of Wheat for Slow Rusting Resistance against Puccinia striiformis Westend. f.sp. tritici

Race‐specific resistance of wheat (Triticum aestivum L.) to yellow rust caused by Puccinia striiformis Westend. f.sp. tritici is often short‐lived. Slow‐rusting resistance has been reported to be a more durable type of resistance. A set of sixteen bread wheat varieties along with a susceptible control Morocco was tested during 2004–05 to 2006–07 in field plots at Peshawar (Pakistan) to identify slow rusting genotypes through epidemiological variables including final rust severity (FRS), apparent infection rate (r), area under disease progress curve (AUDPC), average coefficients of infection (ACI) and leaf tip necrosis (LTN). Epidemiological parameters of resistance were significantly (P < 0.01) different for years/varieties in three seasons, while variety × year interactions remained non‐significant. Sequence tagged site (STS) marker, csLV34 analyses revealed that cultivars Faisalabad‐83, Bahawalpur‐95, Suleman‐96, Punjab‐96, Bakhtawar‐93, Faisalabad‐85, Shahkar‐95 and Kohsar‐95 possessed Yr18 linked allele. Faisalabad‐83, Bahawalpur‐95, Suleman‐96, Punjab‐96, Bakhtawar‐93 and Faisalabad‐85 were relatively more stable over 3‐years where FRS, AUDPC and r values reduced by 80, 84 and 70% respectively compared to control Morocco. These six varieties therefore could be exploited for the deployment of Yr18 in breeding for slow rusting in wheat. Both FRS and ACI are suitable parameters for phenotypic selection.     

Enhancement of Histological Detail Using Metanil Yellow as Counterstain in Periodic Acid Schiff's Hematoxylin Staining of Glycol Methacrylate Tissue Sections

Histological detail in sections from tissues embedded in glycol methacrylate was improved by counterstaining PAS/iron-hematoxylin stained sections with a dilute solution of metanil yellow. The addition of the counterstain increases contrast in tissue sections and highlights PAS-positive entities. The staining protocol provides sharp definition of tissue morphology, differentiates cell types and other tissue components and does not produce background staining.     

An automatic method for removing empty camera trap images using ensemble learning

Camera traps often produce massive images, and empty images that do not contain animals are usually overwhelming. Deep learning is a machine‐learning algorithm and widely used to identify empty camera trap images automatically. Existing methods with high accuracy are based on millions of training samples (images) and require a lot of time and personnel costs to label the training samples manually. Reducing the number of training samples can save the cost of manually labeling images. However, the deep learning models based on a small dataset produce a large omission error of animal images that many animal images tend to be identified as empty images, which may lead to loss of the opportunities of discovering and observing species. Therefore, it is still a challenge to build the DCNN model with small errors on a small dataset. Using deep convolutional neural networks and a small‐size dataset, we proposed an ensemble learning approach based on conservative strategies to identify and remove empty images automatically. Furthermore, we proposed three automatic identifying schemes of empty images for users who accept different omission errors of animal images. Our experimental results showed that these three schemes automatically identified and removed 50.78%, 58.48%, and 77.51% of the empty images in the dataset when the omission errors were 0.70%, 1.13%, and 2.54%, respectively. The analysis showed that using our scheme to automatically identify empty images did not omit species information. It only slightly changed the frequency of species occurrence. When only a small dataset was available, our approach provided an alternative to users to automatically identify and remove empty images, which can significantly reduce the time and personnel costs required to manually remove empty images. The cost savings were comparable to the percentage of empty images removed by models.     

Capturing Common Loons during prenesting and nesting periods

ABSTRACT Several techniques have been used to capture Common Loons (Gavia immer), but effectiveness is limited during periods of the breeding season when loons do not have chicks. From 2005 to 2008, we studied loons in northern Wisconsin and used night lighting to capture loons on nests and also designed a lift net for capturing loons prior to nesting. At night, incubating loons were approached by boat and, when within about 30–60 m, we focused a spotlight on the loon and, once at the nest, captured loons using a landing net. Using this technique, we captured 23 loons in 29 attempts (79%). In addition, taped calls and loon decoys were used to entice prenesting, territorial loons into a shoreline‐based, lift‐net trap at a capture efficiency of 67% (10 captures in 15 attempts) during the second year of use. Our diurnal lift‐net trap and night‐light nest‐capture techniques allowed us to capture adult Common Loons during periods of the breeding season when previous investigators have found loons difficult to catch. These techniques may also be useful for capturing other species of territorial waterbirds, especially other species of loons.     

Seasonal abundance, biting cycle and parity of the mosquito Haemagogus leucocelaenus in Trinidad, West Indies

Adult female populations of Haemagogus leucocelaenus (Dyar and Shannon), the sylvan vector of yellow fever, were monitored weekly during 1981–82 by human collectors on the ground at Point Gourde in Chaguaramas Forest, 16 km west of Port of Spain, Trinidad.
Hg.leucocelaenus showed only diurnal landing activity, from 06.00 to 18.00 hours (sunrise to sunset, universal time), with a single peak of activity between 10.00 and 14.00 hours.
Densities of Hg.leucocelaenus during the wet season (May–November) were about double the level recorded during the dry season (December–April).
Monthly parous rates averaged 53.9% (range 25–90%) and some females were up to five-pars. Retained eggs (range 2–6, mean 4/female) were found in the ovaries of 0.34% of landing females, all of which had stage 1 ovarian follicles for the next gonotrophic cycle. Therefore blood-feeding is not inhibited by egg retention. Hg. leucocelaenus vector potential is reappraised in the light of these findings.     

The Schizosaccharomyces pombe Hikeshi/Opi10 protein has similar biochemical functions to its human homolog but acts in different physiological contexts

Human Hikeshi (HsHikeshi) is a nuclear import carrier for Hsp70s and is required for cell survival after heat shock. The Hikeshi homolog in Schizosaccharomyces pombe (SpHikeshi/Opi10) localizes to the nuclear rim, interacts with the Hsp70 homolog Ssa2, and mediates its nuclear import in a reconstituted mammalian nuclear transport system. However, SpHikeshi/Opi10 is not required for heat stress response and survival after heat stress. Instead, SpHikeshi/Opi10 is required for the normal expression of stress response genes under optimal conditions and for cell growth during glucose deprivation. Here, the functions of SpHikeshi/Opi10 are discussed and compared to the functions of HsHikeshi.