Isolation of endophytic diazotrophic bacteria from wetland rice

Endophytic nitrogen-fixing bacteria are believed to contribute substantial amounts of N to certain gramineous crops. We have been interested to find (a) a diazotroph(s) in rice which can aggressively and stably persist and fix nitrogen in interior tissues and (b) unique rice-diazotrophic endophyte combinations. To achieve these objectives, it has been essential to find an efficient method to surface sterilize rice tissues. The method described here consists of exposing tissues to 1% Chloramine T for 15 min followed by shaking with glass beads. It has proven very efficient since (a) surface bacterial populations on the root and culm were found to be reduced by more than 90%, (b) the number of the internal colonizers was found to be significantly higher than the number of surface bacteria, and (c) colonization of root but not subepidermal tissue by gusA-marked Herbaspirillum seropedicae Z67 bacteria was found to be virtually eliminated. Nitrogen-fixing putative endophytic populations (MPN g dry wt) in the root (7.94 × 10) and culm (2.57 × 10) on field-grown IR72 plants grown in the absence of N fertilizer was found to be significantly higher near heading stage. The corresponding total putative endophyte populations in the tissues of 25 highly diverse genotypes of rice and their relatives was found to range from 10–10and 10–10, in the roots and culms, respectively. Generally, the resident bacteria were found to be non-diazotrophic, although in isolated cases diazotrophs were found, for example in the roots and culm of IR72 rice plants, or the culm of Zizaniopsis villanensis plants. The size of populations of diazotrophic bacteria in different rice genotypes was found to be 10–10 for the roots and 10–10 for the culms, respectively. The rice genera-related plants Potamophila pariffora and Rhynchoryza subulata showed the highest levels.     

Effects of Elatobium abietinum on nutrient fluxes in Sitka spruce canopies receiving elevated nitrogen and sulphur deposition

1 In a field acid mist simulation experiment, Sitka spruce (Picea sitchensis) was sprayed with different pollutant treatments: N, NH₄NO₃; S, Na₂SO₄; NS Acid, NH₄NO₃ + H₂SO₄ and control, no spray. Treatment effects on the abundance of the green spruce aphid Elatobium abietinum and honeydew production were assessed. In addition, needles were sampled for phyllosphere micro‐organisms. In a manipulative experiment, shoots were established and maintained as with or without E. abietinum infestation in order to determine the effects of infestation on needle loss and throughfall nutrient fluxes. 2 Aphid numbers were highest during the end of May and early June, with almost twice as many needles infested in the NS Acid treatment compared with the other treatments. Honeydew production was not affected by the treatments. 3 On infested shoots, increasing numbers of yellowing and dead needles were recorded above the throughfall collectors as the season progressed. The numbers of dead needles falling into the collectors were significantly higher beneath infested shoots. There were strong positive correlations between aphid numbers above the throughfall collectors, the number of yellowing and dead needles on the shoots and the number of needles in the funnels of the throughfall collectors. Litter production was more affected by aphid number than by pollutant treatment. 4 Bacteria, yeasts and filamentous fungi were more prolific on infested needles and treatment effects on colony forming units (CFUs) were most pronounced in the NS Acid treatment. 5 Fluxes of inorganic nitrogen beneath infested shoots were generally lower than beneath uninfested shoots. This effect was more pronounced in those treatments that supplied N i.e. N, NS Acid. The combination of aphid infestation and N‐addition exerted the strongest influence on nutrient fluxes. The fluxes of potassium and of organic carbon (DOC) were higher beneath infested shoots in all treatments, through most of the survey period.     

Mesoscale Gradients of Herb Richness and Abundance in Central Amazonia1

There are few hypotheses to explain local understory diversity patterns. There is a consensus that climate and soil fertility affect understory density and diversity at large scales, but few studies addressed the mechanisms controlling density and diversity locally. Here, I examine patterns of abundance and diversity of three understory herb groups along gradients of soil nutrients and topography at the mesoscale (64 km²) in a wet tropical forest, and possible factors causing them. Herb richness, diversity, density, and cover were measured in fifty‐nine 250 × 2 m plots systematically distributed over Reserva Ducke, Manaus. Herb groups responded differently to environmental gradients. Whereas density and cover of pteridophytes increased with altitude and slope, Marantaceae density and cover decreased. Density of sedges increased with altitude, but did not vary with slope. Density and cover of Marantaceae and sedges but not pteridophytes increased with the soil cation content. Pteridophyte richness increased with slope whereas Marantaceae richness decreased, richness of both groups increased with cation content. Diversity increased with altitude for Marantaceae and decreased for pteridophytes. Some of these patterns agree with what is expected from herbs, such as the greater abundance of Marantaceae and sedges in flat and low altitude plots, where water availability is higher and probably also light, and the greater richness of Marantaceae and pteridophytes in higher nutrient plots. The unexpected results of higher abundance and richness of pteridophytes in slopes, instead of in bottomlands, suggest that biotic or litter‐mediated controls may be important to set these patterns.     

The size at reproduction of canopy tree species in central Africa

Size at reproduction is a key aspect of species life history that is relatively understudied for long‐lived tropical trees. Here, we quantified reproductive diameter for 31 major timber species across 11 sites in Cameroon, Congo, and Central African Republic. Specifically, we examined whether (1) between‐species variability is correlated with other species traits; (2) reproductive diameter varies within‐species among sites; (3) reproductive status varies with crown exposure; and (4) the minimum cutting diameter limits (MCDL) imposed by national forest regulations enable seed trees to persist after logging operations. Consistent with studies conducted elsewhere in the tropics, we found great variability in diameter at reproduction among species, which correlated with adult stature (maximum diameter and height). For some species, reproductive diameter thresholds substantially varied between sites, and crown exposure had a significant positive effect on reproductive status. Most MCDLs were found to be suitable, with trees having a high probability of being seed trees at MCDL. Our findings have implications for the sustainable management of production forests, and they highlight questionable MCDLs for some species and between‐site variation in reproductive diameter. The study also highlights the need for long‐term phenological monitoring of tree species spanning a large range of ecological strategies to address both theoretical (species life history, allocation trade‐offs) and practical questions (MCDL).     

Suppression and restoration of primordial germ cell marker gene expression in channel catfish,Ictalurus punctatus,using knockdown constructs regulated by copper transport protein gene promoters: Potential for reversible transgenic sterilization

Complementary DNA overexpression and short hairpin RNA interference approaches were evaluated for decreasing expression of primordial germ cell (PGC) marker genes and thereby sterilizing channel catfish, Ictalurus punctatus, by delivering knockdown constructs driven by a constitutive promoter from yeast and a copper transport protein gene into fish embryos by electroporation. Two PGC marker genes, nanos and dead end, were the target knockdown genes, and their expressions, along with that of an off-target gene, vasa, were evaluated temporally using real-time polymerase chain reaction. Copper sulfate was evaluated as a repressor compound. Some of the constructs knocked down PGC marker gene expression, and some of the constructs were partially repressed by application of 0.1-ppm copper sulfate. When the rate of sexual maturity was compared for three-year-old broodfish that had been exposed to the sterilizing constructs during embryologic development and controls that had not been exposed, several treatments had reduced sexual maturity for the exposed fish. Of two promoter systems evaluated, the one which had been designed to be less sensitive to copper generally was more effective at achieving sterilization and more responsive to repression. Knockdown constructs based on 3′ nanos short hairpin RNA interference appeared to result in the best repression and restoration of normal sexual maturity. We conclude that these copper-based systems exhibited good potential for repressible transgenic sterilization. Optimization of this system could allow environmentally safe application of transgenic technology and might be applicable to other applications for aquatic organisms.     

植物材料表面消毒方法的改进

苹果枝条用０．１％ＨｇＣＩ2磁力搅拌消毒１５-２０ｍｉｎ,无菌水磁力搅拌清洗５次,每次５ｍｉｎ。污染率和杀死率在１０％以下,成功率９０％左右,且无褐化。     

The Potential of Tree Rings for the Study of Forest Succession in Southern Mexico

Studies of tropical secondary forest succession face strong limitations due to the slow pace of succession and the time-consuming task of monitoring processes. The occurrence of tree rings in secondary forest trees may help expand our knowledge on succession in these systems and may be useful for fallow dating in chronosequence studies. We examine here the potential of tree rings to study forest succession by sampling 70 species along chronosequences of dry and wet forests in southern Mexico. Based on wood anatomical features, we estimated that about 37 percent of the species presented distinct growth rings useful for ring studies. Overall, maximum number of rings matched well the interview-based fallow ages but, at some sites, trees had consistently higher numbers of rings, probably due to errors in fallow ages derived from interviews. Best fallow age estimations were obtained by examining rings in both pioneer and nonpioneer species. Reconstruction of species' establishment dates revealed that pioneer and nonpioneer species establish early during succession, and that species of both groups continue to recruit after many years. Our study clearly shows that tree ring analysis is a promising tool for studies on secondary forest succession in the tropics.     

C. botulinum inactivation kinetics implemented in a computational model of a high‐pressure sterilization process

High‐pressure, high‐temperature (HPHT) processing is effective for microbial spore inactivation using mild preheating, followed by rapid volumetric compression heating and cooling on pressure release, enabling much shorter processing times than conventional thermal processing for many food products. A computational thermal fluid dynamic (CTFD) model has been developed to model all processing steps, including the vertical pressure vessel, an internal polymeric carrier, and food packages in an axis‐symmetric geometry. Heat transfer and fluid dynamic equations were coupled to four selected kinetic models for the inactivation of C. botulinum; the traditional first‐order kinetic model, the Weibull model, an nth‐order model, and a combined discrete log‐linear nth‐order model. The models were solved to compare the resulting microbial inactivation distributions. The initial temperature of the system was set to 90°C and pressure was selected at 600 MPa, holding for 220 s, with a target temperature of 121°C. A representation of the extent of microbial inactivation throughout all processing steps was obtained for each microbial model. Comparison of the models showed that the conventional thermal processing kinetics (not accounting for pressure) required shorter holding times to achieve a 12D reduction of C. botulinum spores than the other models. The temperature distribution inside the vessel resulted in a more uniform inactivation distribution when using a Weibull or an nth‐order kinetics model than when using log‐linear kinetics. The CTFD platform could illustrate the inactivation extent and uniformity provided by the microbial models. The platform is expected to be useful to evaluate models fitted into new C. botulinum inactivation data at varying conditions of pressure and temperature, as an aid for regulatory filing of the technology as well as in process and equipment design. © 2009 American Institute of Chemical Engineers Biotechnol. Prog., 2009