Modelling the distribution of the invasive Ziziphus mauritiana along road corridors in Zimbabwe

We investigate how human fruit consumption affects the spread of the alien invasive Ziziphus mauritiana along road corridors in northern Zimbabwe. A field survey was conducted to identify and map Z. Mauritiana stems at 25 randomly located 6‐ha plots placed along two main roads connecting the Zambezi Valley to the Highveld region. The L‐function was used to test for evidence of significant spatial clustering of the stems. The inhomogeneous point model fitted by maximum likelihood was also applied to check whether distance from the road explains variation in the number of stems per unit area. Finally, a t test was executed on log‐transformed abundance data to test for significant differences in the mean number of saplings and adults between the Zambezi Valley and the Highveld. Results of the L‐function indicated that Z. mauritiana had a clustered and linear distribution along roads both in the Zambezi Valley and Highveld regions. Results of the t test showed that the mean number of saplings per plot in the Zambezi Valley (μ₁ = 275) was three times higher than in the Highveld (μ₂ = 78), with p < 0.01. The mean number of adult trees was also significantly higher in the Zambezi Valley than in the Highveld.     

Effect of site-directed point mutations on protein misfolding: A simulation study

A Monte Carlo simulation based sequence design method is proposed to investigate the role of site-directed point mutations in protein misfolding. Site-directed point mutations are incorporated in the designed sequences of selected proteins. While most mutated sequences correctly fold to their native conformation, some of them stabilize in other nonnative conformations and thus misfold/unfold. The results suggest that a critical number of hydrophobic amino acid residues must be present in the core of the correctly folded proteins, whereas proteins misfold/unfold if this number of hydrophobic residues falls below the critical limit. A protein can accommodate only a particular number of hydrophobic residues at the surface, provided a large number of hydrophilic residues are present at the surface and critical hydrophobicity of the core is preserved. Some surface sites are observed to be equally sensitive toward site-directed point mutations as the core sites. Point mutations with highly polar and charged amino acids increases the misfold/unfold propensity of proteins. Substitution of natural amino acids at sites with different number of nonbonded contacts suggests that both amino acid identity and its respective site-specificity determine the stability of a protein. A clash-match method is developed to calculate the number of matching and clashing interactions in the mutated protein sequences. While misfolded/unfolded sequences have a higher number of clashing and a lower number of matching interactions, the correctly folded sequences have a lower number of clashing and a higher number of matching interactions. These results are valid for different SCOP classes of proteins.     

不同砧木嫁接番茄光合特性的研究

采用LI-6400便携式光合作用系统对田间条件下嫁接番茄(珍红/砧木1号,珍红/桂砧1号)以及接穗(珍红)的光合作用特性进行了系统研究。结果表明:自根苗的光饱和点显著高于嫁接苗;自根苗和嫁接苗的光补偿点差异不显著,以珍红/桂砧1号最高(31.8μmolphotons·m-2·s-1),珍红/砧木1号最低(17.6μmolphotons·m-2·s-1);嫁接苗的CO2补偿点显著低于自根苗,且珍红/桂砧1号与自根苗的差异达极显著水平;表观量子效率变化范围为0.062~0.073;CO2饱和点在844~971μmolCO2·mol-1左右,CO2羧化效率变化范围为0.055~0.086molCO2·m-2·S-1;光合作用CO2补偿点珍红、珍红/砧木1号和珍红/桂砧1号分别为74.0、60.8和50μmolCO2·mol-1。嫁接苗的日平均光合速率和蒸腾速率高于自根苗,但两者的日进程曲线均为“单峰型”,其光合作用不存在“午休现象”。     

Cold‐induced expression of diapause in Praon volucre: fitness cost and morpho‐physiological characterization

Cold exposure (2°C for 7 days) in constant darkness at mummy stage induces diapause expression in 9% of the Praon volucre Haliday population. Diapausing parasitoids show a significant delay in emergence time compared with nondiapausing counterparts. A diapause‐mediated polyphenism is observed in mummy colour, with diapausing mummies being clearly darker than nondiapausing ones. The diapause status of dark mummies is confirmed by a significant reduction in metabolic rate. Diapausing parasitoids also display specific morphological characteristics: they are heavier (fresh and dry mass) and accumulate larger fat reserves than nondiapausing counterparts. The diapause status is associated with a fitness cost in terms of adult longevity. There is no evidence of diapause‐related change in supercooling ability.     

The Impact of Seeding Method on Diversity and Plant Distribution in Two Restored Grasslands

Previous studies have compared grassland restoration techniques based on resulting species richness and composition. However, none have determined if different techniques generate different plant distributions in space, which may further impact restoration success. This study tests if there are quadrat‐scale (1 m²) differences between paired drilled and broadcast plantings in diversity, composition, and plant distributions. Higher competition intensity in and more contiguous spaces between rows in drill‐seeded restorations were hypothesized to result in larger patches of native grasses and exotic species. Two paired drill‐ and broadcast‐seeded plantings were sampled in June 2007 in Iowa, U.S.A. Within 10 quadrats in each planting, we measured species abundance with point intercept sampling and plant distributions by dividing the quadrat into 64 cells and recording the most abundant species in each cell. Drilled and broadcast plantings at both sites had similar Simpson’s diversity and evenness. However, the effect of planting type on species richness, composition, and plant distribution was site dependent. Native warm‐season grasses in one site, and exotic species in the second, occupied more space and were distributed in larger patches in drilled plantings. Furthermore, drilled canopies consistently captured more light than broadcast canopies. This suggests that initial differences in seed placement can affect resulting plant distributions, resource use, and potentially long‐term species turnover. Mechanisms structuring vegetation in these communities need to be further investigated to determine if this approach can provide more information on long‐term diversity maintenance in restorations than traditional measures.     

Evaluating food availability and nest predation risk as sources of bias in aural bird surveys

ABSTRACT The use of aural surveys to estimate population parameters is widespread in avian studies. Despite efforts to increase the efficacy of this method, the potential for ecological context to bias population estimates remains largely unexplored. For example, food availability and nest predation risk can influence singing activity independent of density and, therefore, may bias aural estimates where these ecological factors vary systematically among habitats or other categories of ecological interest. We used a natural fire event in a mixed‐conifer forest that experienced variation in fire severity (low, intermediate, and high) to determine if aural surveys produce accurate density estimates of Dark‐eyed Juncos ( Junco hyemalis) independent of ecological context. During the first 2‐yr postfire, we censused junco populations in each burn type with intensive spot‐mapping and nest searching, locating 168 nests. Simultaneously, we conducted fixed‐radius point‐count surveys and estimated food availability and nest predation risk in each burn type to test whether ecological context may influence aural detection probability independent of actual density. We found no difference in nesting densities among patches burned at different severity. Arthropod food availability was inversely related to fire severity during the first postfire breeding season, but increased to higher levels across all severities during the second. In both years, aural detections were significantly greater in intermediate severity patches that consistently represented the habitat with the lowest nest predation risk. These results suggest that nest predation risk may significantly bias aural estimates of avian populations. Although traditional aural survey methods such as the Breeding Bird Survey measure habitat attributes, our findings highlight the difficulty in assessing relevant covariates in estimates of avian population. Future research must consider the potential for nest predation and other ecological factors to drive interannual or interhabitat variation in avian population estimates independent of true changes in population size.     

Glucose-induced period-doubling cascade in the electrical activity of pancreatic β-cells

 In the presence of stimulatory concentrations of glucose, the membrane potential of pancreatic β-cells may experience a transition from periods of rapid spike-like oscillations alternating with a pseudo-steady state to spike-only oscillations. Insulin secretion from β-cells closely correlates the periods of spike-like oscillations. The purpose of this paper is to study the mathematical structure which underlines this transitional stage in a pancreatic β-cell model. It is demonstrated that the transition can be chaotic but becomes more and more regular with increase in glucose. In particular, the system undergoes a reversed period-doubling cascade leading to the spike-only oscillations as the glucose concentration crosses a threshold. The transition interval in glucose concentration is estimated to be extremely small in terms of the rate of change for the calcium dynamics in the β-cells. The methods are based on the theory of unimodal maps and the geometric and asymptotic theories of singular perturbations. Received: 25 October 1996/Revised version: 18 August 1997     

The pathogen Mycobacterium marinum, a faster growing close relative of Mycobacterium tuberculosis, has a single rRNA operon per genome

Although Mycobacterium marinum and Mycobacterium tuberculosis are very closely related they differ significantly in their growth rates. The Type strain of M. marinum and one clinical isolate were investigated and, like M. tuberculosis, were found to have a single rRNA (rrn) operon per genome located downstream from murA gene and controlled by two promoters. No sequence differences were found that account for the difference in the growth rates of the two species. We infer that M. tuberculosis has the capacity to synthesize rRNA much faster than it actually does; and propose that the high number of insertion sequences in this species attenuate growth rate to lower values.