Metabolically Engineered <Emphasis Type="Italic">Rhodobacter sphaeroides</Emphasis> RV strains for Improved Biohydrogen Photoproduction Combined with Disposal of Food Wastes

Three differently metabolically engineered strains, 2 single PHA^- and Hup^- mutants and one double PHA^-/Hup^- mutant, of the purple nonsulfur photosynthetic bacterium Rhodobacter sphaeroides RV, were constructed to improve a light-driven biohydrogen production process combined with the disposal of solid food wastes. These phenotypes were designed to abolish, singly or in combination, the competition of H₂ photoproduction with polyhydroxyalkanoate (PHA) accumulation by inactivating PHA synthase activity, and with H₂ recycling by abolishing the uptake hydrogenase enzyme. The performance of these mutants was compared with that of the wild-type strain in laboratory tests carried out in continuously fed photobioreactors using as substrates both synthetic media containing lactic acid and media from the acidogenic fermentation of actual fruit and vegetable wastes, containing mainly lactic acid, smaller amounts of acetic acia, and traces of higher volatile acids. With the lactic acid-based synthetic medium, the single Hup^- and the double PHA^-/Hup^- mutants, but not the single PHA^- mutant, exhibited increased rates of H₂ photoproduction, about one third higher than that of the wild-type strain. With the food-waste-derived growth medium, only the single Hup^- mutant showed higher rates of H₂ production, but all 3 mutants sustained a longer-term H₂ photoproduction phase than the wild-type strain, with the double mutant exhibiting overall the largest amount of H₂ evolved. This work demonstrates the feasibility of single and multiple gene engineering of microorganisms to redirect their metabolism for improving H₂ photoproduction using actual waste-derived substrates.     

Stoichiometry of the aerobic biodegradation of the organic fraction of municipal solid waste (MSW)

An elemental analysis was applied to describe the composition ofthe organic fraction of municipal solid waste (MSW). The initial elemental composition was constant at₅H_8.5O₄N_0.2. The changes of the composition during the biodegradation process and the final waste composition were strictly dependent on the process conditions. The decrease in carbon content due to biodegradation increased with temperature at which the experiments were conducted, from 20% at20 °C to about 40% at 37–42 °C after 96 hours. It was correlatedwith the amount of oxygen that was utilised in the investigated processes of aerobicbiodegradation of the waste suspension. The amount of oxygen required for biodegradation of organic fraction of MSW was estimated on the basis of stoichiometric equations and increased from 0.92 moles per 1 mole of waste at 20 °C to 1.6 moles at 42 °C within 96 hours of the experiments.     

Microbial destruction of cyanide wastes in gold mining: process review

Microbial destruction of cyanide and its related compounds is one of the most important biotechnologies to emerge in the last two decades for treating process and tailings solutions at precious metals mining operations. Hundreds of plant and microbial species (bacteria, fungi and algae) can detoxify cyanide quickly to environmentally acceptable levels and into less harmful by-products. Full-scale bacterial processes have been used effectively for many years in commercial applications in North America. Several species of bacteria can convert cyanide under both aerobic and anaerobic conditions using it as a primary source of nitrogen and carbon. Other organisms are capable of oxidizing the cyanide related compounds of thiocyanate and ammonia under varying conditions of pH, temperature, nutrient levels, oxygen, and metal concentrations. This paper presents an overview of the destruction of cyanide in mining related solutions by microbial processes.     

Dynamical modelling of a waste stabilisation pond

This paper is concerned with the dynamical modelling and the parameter identification of a waste stabilisation pond. First, a dynamical model of the pond is proposed, based on mass balances in the first basin. It involves a reaction network involving eight (bio)chemical reactions, and in particular the (chemical or biochemical) oxidation of H₂S. The height of the pond is divided into two layers: the upper layer (approximate depth: 0.8 m), and the lower layer (about 0.2 m). Three microorganism populations are considered: microalgae and aerobic bacteria (in the upper layer), and sulphate-reducing anaerobic bacteria (in the lower layer). The Droop model is introduced to emphasise the potential activity of microalgae when daylight has disappeared (sunset). The transport of organic matter between the two layers is also considered in the model. The derivation is based on collected data and intensive follow-up of a specific pond at the village of Rethondes in Northern France. The parameters of the model are then identified on the basis of these data by considering data in spring, summer and autumn. The calibration of the model parameters is a challenging problem because of the large number of parameters, the limited number of available experimental data and the model complexity. The objective in the identification procedure was thus limited to obtain the largest number of unique values for the parameters in the three instances.     

Enteric pathogens and soil: a short review

It is known that soil is a recipient of solid wastes able to contain enteric pathogens in high concentrations. Although the role of soil as a reservoir of certain bacterial pathogens is not in question, recent findings show that soil may have a larger role in the transmission of enteric diseases than previously thought. Many of the diseases caused by agents from soil have been well characterized, although enteric diseases and their link to soil have not been so well studied. Gastrointestinal infections are the most common diseases caused by enteric bacteria. Some examples are salmonellosis (Salmonella sp.), cholera (Vibrio cholerae), dysentery (Shigella sp.) and other infections caused by Campylobacter jejuni, Yersinia sp. and Escherichia coli O157:H7 and many other strains. Viruses are the most hazardous and have some of the lowest infectious doses of any of the enteric pathogens. Hepatitis A, hepatitis E, enteric adenoviruses, poliovirus types 1 and 2, multiple strains of echoviruses and coxsackievirus are enteric viruses associated with human wastewater. Among the most commonly detected protozoa in sewage are Entamoeba histolytica, Giardia intestinalis and Cryptosporidium parvum. This article reviews the existing literature of more than two decades on waste disposal practices that favor the entry of enteric pathogens to soil and the possible consequent role of the soil as a vector and reservoir of enteric pathogens. Electronic Publication     

Analysis of carbohydrates and amino acids in vegetable waste waters by ion chromatography

High-performance anion exchange chromatography coupled with pulsed amperometric detection was used for the quantitative determination of total and free sugars in olive oil mill waste waters (OMWW). Automated amino acid ion chromatography was employed to analyse total and free amino acids in the same OMWW. Sugars were analysed in samples pre-purified by means of a three-step purification procedure involving: (i) methanol precipitation of OMWW; (ii) dialysis of the obtained solid and liquid fractions; and (iii) chromatographic purification on RP18 phase followed by Amberlite resin. The amino acids were determined directly in samples obtained from the first two steps performed for sugar analysis. The analysis carried out with the reported methodologies allowed the quantitative determination of total sugars and amino acids and the differentiation between their free and bound forms. The sugars determined were arabinose, fructose, galactose, glucose, rhamnose, xylose, galacturonic and glucuronic acids, and the amino acids were Asp, Glu, Thr, Ser, Pro, Gly, Ala, Val, Met, Ile, Leu, Tyr, Phe, Lys, His, Arg and Cys. Asn, Gin, and Trp were not detected. The technological, biotechnological and environmental advantages arising from this analytical methodology applied to OMWW are briefly discussed.     

Process inhibition due to organic acids in fed-batch composting of food waste – influence of starting culture

Inhibition of the degradation during low pH conditions has been observed in fed-batch composting systems. To analyse this phenomenon, fed-batch composting of food waste with different amounts of starting culture was examined in laboratory reactor experiments. Changes in temperature, carbon dioxide evolution, pH, solids, ash and short chain organic acids were measured. In reactors with a daily feed rate of 24% or less of the starting culture, thermophilic temperatures occurred and the pH and carbon dioxide evolution were high and stable after a starting period of 4–5 days. In reactors with a daily feed rate of 48% or more of the starting culture the composting process failed, as the pH dropped below 6 and remained there and the temperature and carbon dioxide evolution were low. It was concluded that the use of adequate amounts of starting culture consisting of active compost can efficiently prevent low pH conditions and process inhibition in fed-batch composting of food waste.     

Bacterial community dynamics during <Emphasis Type="Italic">in-situ</Emphasis> bioremediation of petroleum waste sludge in landfarming sites

In-situ bioremediation of petroleum waste sludge in landfarming sites of Motor Oil Hellas (petroleum refinery) was studied by monitoring the changes of the petroleum composition of the waste sludge, as well as the changes in the structure of the microbial community, for a time period of 14 months. The analyses indicated an enhanced degradation of the petroleum hydrocarbons in the landfarming areas. A depletion of n-alkanes of approximately 75–100% was obtained. Marked changes of the microbial communities of the landfarms occurred concomitantly with the degradation of the petroleum hydrocarbons. The results obtained from terminal restriction fragment length polymorphism (T-RFLP) analysis of polymerase chain reaction (PCR) amplified 16S rRNA genes demonstrated that bacteria originating from the refinery waste sludge and newly selected bacteria dominated the soil bacterial community during the period of the highest degradation activity. However, the diversity of the microbial community was decreased with increased degradation of the petroleum hydrocarbons contained in the landfarms. T-RFLP fingerprints of bacteria of the genera Enterobacter and Ochrobactrum were detected in the landfarmed soil over the entire treatment period of 14 months. In contrast, the genus Alcaligenes appeared in significant numbers only within the 10 month old landfarmed soil. Genes encoding catechol 2,3-dioxygenase (subfamily I.2.A) were detected only in DNA of the untreated refinery waste sludge. However, none of the genes known to encode the enzymes alkane hydroxylase AlkB, catechol 2,3-dioxygenase (subfamily I.2.A) and naphthalene dioxygenase nahAc could be detected in DNA of the landfarmed soils.     

Production of alternatives to fuel oil from organic waste by the alkane-producing bacterium, Vibrio furnissii M1

AIMS: We investigated the production of alternatives to fuel oil through the bacterial metabolism of organic waste. The availability for this purpose of various sources of organic waste for hydrocarbon production by the alkane-producing bacterium, Vibrio furnissii M1, was examined. METHODS AND RESULTS: We screened 17 authentic compounds which can generally be found in organic waste for their hydrocarbon production. Carbon (3 mmol) in a 50-ml culture with acetic acid, lactic acid, butyric acid, succinic acid, malic acid, pentanoic acid, hexanoic acid glucose, xylose, starch or sucrose yielded 10-27 mg of alkanes or alkenes. The chain length of these alkanes or alkenes varied according to the culture from C14 to C27. Varying the ratio of carbon to nitrogen in the culture had no effect on the hydrocarbon production. Crude blackstrap molasses were also converted into alkanes with a conversion ratio of 20% (half of that in an authentic sucrose medium) of the total carbon consumption. CONCLUSIONS: V. furnissii M1 could produce hydrocarbons corresponding to kerosene or light oil from volatile fatty acids and sugars. SIGNIFICANCE AND IMPACT OF THE STUDY: This is the first report on bacterial hydrocarbon production from organic waste.     

Engineering stabilising beta-sheet interactions into a conformationally flexible region of the folding transition state of ubiquitin

Protein engineering studies suggest that the transition state for the folding of ubiquitin is highly polarised towards the N-terminal part of the sequence and involves a nucleus of residues within the beta-hairpin (residues 1-17) and main alpha-helix (residues 23-34). In contrast, the observation of small phi-values for residues in the C-terminal portion of the sequence (residues 35-76), coupled with a folding topology that results in a much higher contact order, suggests that fast folding of ubiquitin is dependent upon configurational flexibility in the C-terminal part of the polypeptide chain to ensure passage down a relatively smooth folding funnel to the native state. We show that the introduction of a small mini-hairpin motif as an extension of the native 43-50 hairpin stabilises local interactions in the C-terminal part of the sequence, resulting largely in a deceleration of the unfolding kinetics without perturbing the apparent two-state folding mechanism. However, a single-point Leu-->Phe substitution within the engineered hairpin sequence leads to the premature collapse of the denatured ensemble through the stabilisation of non-native interactions and the population of a compact intermediate. Non-linear effects in the kinetic data at low concentrations of denaturant suggest that the collapsed state, which is further stabilised in the presence of cosmotropic salts, may subsequently fold directly to the native state through a "triangular" reaction scheme involving internal rearrangement rather than unfolding and refolding.