GST-His双标签原核表达载体的构建及应用

目的：在原有带有GST标签的pGEX-KG载体上添加His标签,构建双标签原核表达载体,以提高纯化后的融合蛋白的纯度。方法：双酶切pGEX-KG载体,将同样带有双酶切位点编码His标签的DNA序列酶切后与其连接、转化大肠杆菌DH5α、鉴定阳性克隆并测序,并将编码雌激素受体B（ERβ）的片段构建到该载体上,分别利用GST标签和His标签对ERβ蛋白进行2次纯化。结果：构建了GST-His双标签原核表达载体,将ERβ编码片段克隆入该载体中,在原核生物中得到表达;分别用GST和His抗体进行Westernblot分析,均可检测到GST-His-ERβ融合蛋白的表达;利用此双标签载体纯化得到了纯度较高的ERβ蛋白。结论：GST-His双标签原核表达载体的构建对提高目的蛋白纯度具有重要意义。     

表达CCR5Delta32基因对人外周血单核细胞增殖功能的影响

目的：在人外周血单核细胞（PBMC）内表达CCR5Delta32基因,研究是否对该细胞增殖功能产生影响。方法：构建pLenti-CCR5Delta32慢病毒载体,包装后产生重组慢病毒,将其转染PBMC,荧光显微镜观察转染情况,Westernblot鉴定目的蛋白的表达;分别用植物血凝素（PHA）及破伤风类毒素（TTD）刺激培养经转染的靶细胞,采用MTT比色法测定其增殖功能是否受影响。结果：构建了pLenti-CCR5Delta32慢病毒载体,经包装后产生重组慢病毒,滴度约为5×105TU/mL。将其转染PBMC,观察到约半数PBMC胞浆内有绿色荧光蛋白表达,经Westernblot进一步鉴定为目的蛋白;转染的靶细胞经PHA或TTD刺激培养后,有着与正常PBMC相似的增殖功能。结论：构建了重组慢病毒并将其转染PBMC靶细胞,为获得性免疫缺陷综合征的基因治疗研究奠定了基础。     

First Passage Time Analysis of Animal Movement and Insights into the Functional Response

Movement plays a role in structuring the interactions between individuals, their environment, and other species. Although movement models coupled with empirical data are widely used to study animal distribution, they have seldom been used to study search time. This paper proposes first passage time as a novel approach for understanding the effect of the landscape on animal movement and search time. In the context of animal movement, first passage time is the time taken for an animal to reach a specified site for the first time. We synthesize current first passage time theory and derive a general first passage time equation for animal movement. This equation is related to the Fokker–Planck equation, which is used to describe the distribution of animals in the landscape. We illustrate the first passage time method by analyzing the effect of territorial behavior on the time required for a red fox to locate prey throughout its home range. Using first passage time to compute search times, we consider the effect of two different searching modes on a functional response. We show that random searching leads to a Holling type III functional response. First passage time analysis provides a new tool for studying how animal movement may influence ecological processes.     

Dynamics of colony emigration in the ant Aphaenogaster senilis

In many social insect species, colonies frequently emigrate to a new nest. This requires the coordination of many individuals, and it puts the queen at risks of being lost or predated. We experimentally studied colony emigration in the ant Aphaenogaster senilis, who emigrates frequently and obligatorily reproduces by colony fission. As in other species, colony emigration was characterised by a synchronised relocation of workers. Foragers found the new nest site and triggered the relocation of the “inside” workers, which built up following a sigmoid curve. Unlike in Temnothorax, where workers are transported to the new nest, most individuals relocated by walking. The brood was transported around the middle of colony relocation, mostly by “inside” workers because they represent most of the workforce. The queen walked to the new nest at the middle of colony relocation, when the flow of ants to the new nest was maximal. Overall, this temporal dynamic of colony emigration is similar to that observed in other species. However, we argue that species-specific traits, such as whether workers are transported to the new nest or relocate by themselves, may affect parts of the process of colony emigration.     

拟南芥光敏色素A反义RNA载体的构建及转化

光敏色素A是植物远红光信号的关键受体,在植物光信号转导途径中起重要作用。一些具有重要功能的基因(如生长素反应因子8:auxin response factor 8,ARF8)受到PhyA调控。本实验拟通过构建PhyA基因反义株系,研究PhyA调控ARF8等重要功能基因表达的机理。以培养7 d的拟南芥幼苗为材料提取RNA,利用RT-PCR技术扩增出PhyA的全长CDS,将其反向插入表达载体pMD1得到反义表达载体pMD1-PhyA CDSR,并通过农杆菌介导转化拟南芥,经卡那霉素抗性平板筛选和PCR鉴定得到13个PhyA转基因株系。pMD1-PhyA CDSR及其转基因株系的获得为研究PhyA调控ARF8等基因表达的机理奠定了材料基础。     

sRNASVM——基于SVM方法构建大肠杆菌sRNA预测模型

在理解细菌与环境的相互作用方面,细菌sRNA的识别发挥重要作用。文章介绍了一个通过增加训练集中实验证实的sRNA来构建细菌sRNA预测模型的策略,并以大肠杆菌K-12的sRNA预测为例来说明策略的可行性。结果表明,按此策略构建的模型sRNASVM的10倍交叉检验精度达到92.45%,高于目前文献中报道的精度。因此,构建的这一模型将为实验发现sRNA提供较好的生物信息学支持。有关模型和详细结果可以从网站http://ccb.bmi.ac.cn/srnasvm/下载。     

The piggyBac transposon is an integrating non-viral gene transfer vector that enhances the efficiency of GDEPT

Gene-directed enzyme prodrug therapy (GDEPT) is a strategy developed to selectively target cancer cells. However, the clinical benefit is limited due to its poor gene transfer efficiency. To overcome this obstacle, we took advantage of piggyBac (PB) transposon, a natural non-viral gene vector that can induce stable chromosomal integration and persistent gene expression in vertebrate cells, including human cells. To determine whether the vector can also mediate stable gene expression in ovarian cancer cells, we constructed a PB transposon system that simultaneously expresses the Herpes simplex virus thymidine kinase (HSV-tk) gene and the monomeric red fluorescent protein (mRFP1) reporter gene. The recombinant plasmid, pPB/TK, was transfected into ovarian adenocarcinoma cells SKOV3 with FuGENE HD reagent, and the efficiency was given by the percentage of mRFP1-positive cells detected by flow cytometry and confocal microscopy. The specific expression of HSV-tk in transfected cells was confirmed by RT-PCR and western blotting. The sensitivity of transfected cells to pro-drug ganciclovir (GCV) was determined by methylthiazoletetrazolium (MTT) assay. A total of 56.4 ± 8.4% cells transfected with pPB/TK were mRFP1 positive, compared to no measurable mRFP1 expression in pORF-HSVtk-transfected cells. The expression level of HSV-tk in pPB/TK-transfected cells was ∼10 times higher than in pORF-HSVtk-transfected cells. The results show that pPB/TK transfection increases the sensitivity of cells to GCV in a dose-dependent manner. Our data indicate that the PB transposon system could enhance the anti-tumor efficiency of GDEPT in ovarian cancer.     

Role of the cytoskeleton in choanoflagellate lorica assembly

ABSTRACT. Cell division in Acanthoeca spectabilis produces a "naked" motile daughter cell (juvenile) that settles onto a surface and deposits siliceous costal strips that are stored extracellularly in bundles. When complete, the bundles of strips are assembled in a single continuous movement to form a basket-like lorica. Assembly can be divided into four overlapping stages. Stage 1 entails the left-handed rotation of strips at the anterior end while the posterior end remains stationary. Stage 2 includes the posterior protrusion of the cell to form a stalk. Stage 3 involves the anterior extension of the spines, and Stage 4 the dilation of the lorica chamber and deposition of the organic investment. Scanning electron microscopic images reveal a one-to-one association between the moving bundles of strips and the anterior ring of lorica-assembling tentacles. Treatment with microtubule inhibitors produces "dwarf" cells that lack stalks, have their spines extended, and possess collars but lack flagella. Treatment with microfilament (actin) inhibitors prevents extension of the anterior spines. These experiments demonstrate that posterior cell extension is primarily mediated by microtubules whereas extension of the spines is controlled by the actin cytoskeleton. The processes of cytoskeletal rotation and extracellular costal strip movement are compared, respectively, with rotation of nuclei in animal embryos and movement of mammalian cells over surfaces.