A comparison of structural characteristics between old-growth and postfire second-growth hemlock–hardwood forests in Adirondack Park, New York, U. S. A.

1 This study compares the structural characteristics of 12 old‐growth and six postfire second‐growth hemlock–northern hardwood stands in north central Adirondack Park, New York, in order to test the null hypothesis that there are no differences in species composition, size structure, age structure and attributes such as dead wood and canopy gaps between old‐growth stands and this type of second‐growth forest. 2 The second‐growth forests of this study regenerated following widespread logging‐related fires in either 1903 or 1908; the old growth and second growth have similar environmental settings. 3 Estimates of stand ages, derived from an increment core of the oldest tree in each stand, range from 88 to 390 years. 4 Structural attributes are related to stand age (i.e. stage of development). In comparison with the second‐growth forests of this study, older stands are characterized as (a) a larger average diameter of canopy trees; (b) a greater basal area of trees; (c) a lower density of canopy trees and of all trees ≥ 10 cm d.b.h.; (d) a higher density of eastern hemlock (Tsuga canadensis (L.) Carrière) trees; (e) a higher density of large trees (≥ 50 cm d.b.h.); (f) larger canopy gaps; and (g) a greater volume of coarse woody debris (both logs ≥ 20 cm d.b.h. and snags ≥ 10 cm d.b.h.). 5 Despite differences between old growth and second growth, especially in species composition, it appears from observations of the 18 stands that second‐growth forests are developing some structural characteristics of old growth. 6 Structural attributes of the old‐growth forests are similar to characteristics of the same forest type in geographically distant areas in eastern USA.     

引物间同源性和裂口对PCR扩增的影响

采用ＰＣ／Ｇｅｎｅ软件对能扩增出特异睡不能扩增的ＰＣＲ引物进行同源性比较,同源间“裂口（ｇａｐｓ）”差数的统计,得出源率小于或等于３５％,“裂口”差数大于或等于３,是获得理想ＰＣＲ扩增效果的关键参数之一的结论,为引物设计提供了一条直观的依据。     

Characterization of the first adult de novo case of 46,X,der(Y)t(X;Y)(p22.3;q11.2)

Herein, we describe a case of an infertile man detected in postnatal diagnosis with FISH characterization and array-CGH used for genome-wide screening which allowed the identification of a complex rearrangement involving sex chromosomes, apparently without severe phenotypic consequences. The deletion detected in our patient has been compared with previously reported cases leading us to propose a hypothetical diagnostic algorithm that would be useful in similar clinical situations, with imperative multi disciplinary approach integrated with genetic counseling. Our patient, uniquely of reproductive age, is one of six reported cases of duplication of Xp22.3 (~ 8.4 Mb) segment and contemporary deletion of Yq (~ 42.9 Mb) with final karyotype as follows:

46,X,der(Y),t(X;Y)(Ypter → Yq11.221::Xp22.33 → Xpter).ish der(Y) (Yptel+,Ycen+,RP11-529I21+,RP11-506M9-Yqtel −,Xptel +). arrXp22.33p22.31(702–8,395,963, 8,408,289x1), Yq11.221q12 (14,569,317x1, 14,587,321–57,440,839x0)     

Fabrication of Nano-engineered Transparent Conducting Oxides by Pulsed Laser Deposition

Nanosecond Pulsed Laser Deposition (PLD) in the presence of a background gas allows the deposition of metal oxides with tunable morphology, structure, density and stoichiometry by a proper control of the plasma plume expansion dynamics. Such versatility can be exploited to produce nanostructured films from compact and dense to nanoporous characterized by a hierarchical assembly of nano-sized clusters. In particular we describe the detailed methodology to fabricate two types of Al-doped ZnO (AZO) films as transparent electrodes in photovoltaic devices: 1) at low O₂ pressure, compact films with electrical conductivity and optical transparency close to the state of the art transparent conducting oxides (TCO) can be deposited at room temperature, to be compatible with thermally sensitive materials such as polymers used in organic photovoltaics (OPVs); 2) highly light scattering hierarchical structures resembling a forest of nano-trees are produced at higher pressures. Such structures show high Haze factor (>80%) and may be exploited to enhance the light trapping capability. The method here described for AZO films can be applied to other metal oxides relevant for technological applications such as TiO₂, Al₂O₃, WO₃ and Ag₄O₄.     

Coexistence mechanisms of evergreen,deciduous and coniferous trees in a mid-montane mixed forest on Mt. Emei,Sichuan, China

Structure and regeneration of a mid-montane (2200 m a.s.l.)mixed forest codominated by evergreen (Lithocarpuscleistocarpus), deciduous (Acer flabellatum)andconiferous (Tsuga chinensis, Abies fabri, andTaxus chinensis) trees were analyzed in a 40m× 60 m plot on Mt. Emei, Sichuan, China. Plant communitystructure and composition varied depending on topographic micro-habitat withinthe plot. Four topographic communities (topo-communities) were distinguishedwith dominant species corresponding to topography: (1)Abies – valley bank, (2) Acer– lower steep slope, (3) Lithocarpus – uppergentle slope, and (4) Tsuga – ridge. The coexistencemechanisms of the evergreen, deciduous, and coniferous trees were determined byidentifying the regeneration process characteristic of each dominant species,asrepresented by their seedling dispersion patterns and seedling establishmentalong the topographic gradients. The saplings and seedlings of the dominantswere distributed differently according to the topography:Lithocarpus under the canopy of parent trees and in gapsofthe upper gentle slope and ridge, Acer mainly in bothwell-lit and shady sites on the lower steep slope and on fallen logs,Abies on the valley bank but only in well-lit sites,Tsuga on the ridge, Taxus mostly onrock and well-lit sites on the slopes. Distribution of surviving saplings andseedlings was also related to the species of nearby canopy trees. We suggestthat Lithocarpus, Tsuga and Acer tendto be self-replacing in their own topographic habitats, andAbies survives as a fugitive by occupying occasionalsuitable gaps. The variation in soil conditions, particularly nutrients, withtopography affected seedling establishment and the growth of trees. Thesuccessional change of quantitative species composition, as predicted by theMarkovian model, shows the mixed forest to be in a sustained climax stage.     

Gap-phase regeneration in a semideciduous mesophytic forest, south–eastern Brazil

The study was carried out in ten natural canopy gaps in the SantaGenebra County Reserve (22°4945S, 47°0633W)in the county of Campinas, São Paulo State, Brazil. The size and canopyopenness of the gaps were studied using hemispherical photographs. Thevegetation survey included all shrubs and trees with height 0.50m in the gaps interiors and all the individuals with PBH(perimeterat breast height) 15 cm in a 3 m surroundingborder of the gaps. The similarity among the gaps and among their surroundingareas was assessed by the Jaccard similarity index and by cluster analyzes. Thegap size varied from 20.09 to 468 m², with apredominance of small gaps. The families with the greatest species richness inthe gaps were Rutaceae, Rubiaceae and Euphorbiaceae. The species with thegreatest number of individuals in the gaps were Coffeaarabica L., Hybanthus atropurpureus (St. Hil.)Taub. and Actinostemon klotschii (Muell. Arg.) Pax, allwidely distributed in the understorey. Shade-tolerant species (late secondaryspecies) predominated in function of the predominance of small gaps. The highnumber of species found in the gaps reflects the importance of thesedisturbances in the maintenance of species diversity in the studied forest.     

Membrane biogenesis in anoxygenic photosynthetic prokaryotes

Following the discovery of photosynthetic bacteria in the nineteenth century, technical developments of the 1950s led to their use in membrane biogenesis studies. These investigations had their origins in the isolation of subcellular particles designated as ‘chromatophores’ by Roger Stanier and colleagues, which were shown to be photosynthetically competent by Albert Frenkel, and to originate from the intracytoplasmic membrane (ICM) continuum observed in electron micrographs. These ultrastrucutral studies by the G. Drews group, Germaine Cohen-Bazire and others also suggested that the ICM originates by invagination of the cytoplasmic membrane, as later established in the biochemical and biophysical work of the R. Niederman and Drews groups. Through a combination of genetic approaches, first introduced in the early 1980s by Barry Marrs, and the atomic resolution structures determined for light-harvesting antennae and reaction centers, a detailed understanding is emerging of mechanisms regulating their levels in the membrane and the roles played by specific protein domains and additional factors in their assembly and supramolecular organization. Prospects for additional progress during the twenty-first century include further elucidation of molecular aspects of the assembly process and the application of newer spectroscopic probes to photosynthetic unit formation. This revised version was published online in June 2006 with corrections to the Cover Date.     

Role of bicarbonate at the acceptor side of Photosystem II

Besides being the substrate for the carboxylation reaction of photosynthesis, CO₂ (bicarbonate) is required for the activity of Photosystem II (water plastoquinone oxido-reductase). It plays a role on the electron donor side as well as the electron acceptor side. In this contribution, attention will mostly be focused on the history of research into the effects of bicarbonate on electron flow reactions on the acceptor side. Donor side reactions are discussed in this issue by Alan Stemler. This revised version was published online in June 2006 with corrections to the Cover Date.     

`Every dogma has its day'*: a personal look at carbon metabolism in photosynthetic bacteria

Dogmas are unscientific. What is perhaps the greatest biological dogma of all time, the `unity of biochemistry' is, in the main, still having its day. According to present knowledge, the exceptions to this dogma are mere details when seen in relation to the biosystem as a whole. Nevertheless the exceptions are scientifically interesting and the understanding of them has led to a better comprehension of photosynthesis and ecology. Until the discovery of ¹⁴C, photosynthetic CO₂ fixation was like a slightly opened black box. With ¹⁴C in hand scientists mapped out the path of carbon in green plant photosynthesis in the course of a few years. The impressive reductive pentose phosphate cycle was almost immediately assumed to be universal in autotrophs, including anoxygenic phototrophs, in spite of the odd observation to the contrary. A new dogma was born and held the field for about two decades. Events began to turn when green sulfur bacteria were found to contain ferredoxin-coupled ketoacid-oxidoreductases. This led to the formulation of a novel CO₂-fixing pathway, the reductive citric acid cycle, but its general acceptance required much work by many investigators. However, the ice had now been broken and after some years a third mechanism of CO₂ fixation was discovered, this time in Chloroflexus, and then a fourth in the same genus. One consequence of these discoveries is that it has become apparent that oxygen is an important factor that determines the kind of CO₂-fixing mechanism an organism uses. With the prospect of the characterization of hordes of novel bacteria forecast by molecular ecologists we can expect further distinctive CO₂ fixation mechanisms to turn up. This revised version was published online in August 2006 with corrections to the Cover Date.     

Effects of Canopy Gaps,Topography, and Soils on the Distribution of Woody Species in a Central Brazilian Deciduous Dry Forest1

The interrelationships between the distribution of woody species and environmental variables were investigated in an area of deciduous dry forest in Santa Vitöria, central Brazil. This is the first study of a vanishing type of dry forest which grows on base-rich soils originating from the basalt bedrocks of southern Goiás and western Minas Gerais. A survey of topography, soil properties, canopy gaps and woody plants (≥5 cm diameter at the base of the stem) was conducted in 50–15 × 15 m quadrats. The soils were classified into the following soil series: Hapludolls → Haplustolls → Haplustolls → Ustropepts → Rhodustalfs. This series corresponded to a gradient of increasing elevation and effective soil depth and decreasing slope gradient, soil organic matter and total exchangeable bases. A canonical correspondence analysis and a detrended correspondence analysis indicated that plant species’abundance distribution was significantly correlated with both the relative area of canopy gaps in the quadrats and the soil-topography gradient. Presumably, the critical factors involved in these two gradients are, respectively, light and ground water regimes. The influence of canopy gaps (i.e., light) was surprising and has not been documented previously for tropical deciduous dry forests.