Effects of polyamines on the ultrafiltration of plasmid DNA

It is well established that the structure of plasmid DNA is a strong function of solution ionic conditions due to changes in intramolecular electrostatic interactions between the charged phosphate groups along the DNA backbone. Multivalent cations like spermine and spermidine play a critical role in compacting and controlling the structure of supercoiled DNA in living cells. The objective of this work was to investigate the effects of these polyamines on the ultrafiltration of plasmid DNA, including possible opportunities to use these polycations to enhance the purification of specific plasmid isoforms. Data were obtained using a wide range of spermine and spermidine concentrations to evaluate DNA transmission through Biomax polyethersulfone ultrafiltration membranes. Spermine has a very strong effect on DNA transmission, with the sieving coefficient of the supercoiled plasmid decreasing by more than an order of magnitude upon addition of only 15 μM spermine. A comparable change in DNA transmission required >300 μM of the trivalent spermidine. The polyamines were able to significantly increase the selectivity for the separation of DNA from a model protein, but they were unable to provide a significant increase in the selectivity for separating DNA isoforms under the conditions examined in this study. The results do demonstrate that both spermine and spermidine can be used to control the extent of DNA transmission/purification during ultrafiltration. © 2018 American Institute of Chemical Engineers Biotechnol. Prog., 35: e2765, 2019.     

Detection ofBacteroides fragilis endotoxin in amniotic fluid by counterimmunoelectrophoresis

The ability of counter immunoelectrophoresis (CIE) to detectBacteroides fragilis endotoxin in amniotic fluid in small concentrations was evaluated. A method was developed which, in combination with ultrafiltration, permits detection ofB. fragilis endotoxin in amniotic fluid in a concentration of 40 ng/ml or more. The sensitivity threshold was reduced to 2 ng/ml by using a highly reactive IgG-fraction isolated from rabbit anti-B. fragilis IPL E 323 antiserum.     

Nitrogen partitioning and assimilation: methods for the extraction, separation and mass spectrometric analysis of nitrate, amino acid and soluble protein pools from individual plants following 15N labelling

A simple procedure is described for the separation of nitrate, amino acid and soluble protein pools in small volumes of plant extract. Recent developments in mass spectrometry and automated, on-line sample preparation facilitate the precise analysis of the ¹⁵N content of samples containing low concentrations of N (≤5 to ≥50μg) with enrichments close to the natural abundance level. When combined, these separation and analysis techniques make it possible to investigate and quantify the relationships between nitrogen uptake, storage, assimilation, and partitioning between discrete pools of N within individual plants, following ¹⁵N labelling.     

Radiotracer analysis of cadmium speciation in soil solutions using electrophoresis,dialysis, centrifugation,and ultrafiltration

Speciation of carrier-free¹⁰⁹Cd, added in cationic form to prefiltered extracts obtained by leaching forest soil samples with distilled water, was analyzed using electrophoresis, dialysis, centrifugation, and ultrafiltration. Rapid establishment of isotopic equilibrium between the added¹⁰⁹Cd and stable cadmium present in the extracts was observed. All the data obtained indicated that¹⁰⁹Cd and also stable cadmium were present in the analyzed extracts in the form of neutral or negatively charged organic complexes or small colloids. The results of electrophoresis enabled the characterization, at least semiquantitative, of the abundance and electrophoretic mobility of the forms present. The incomplete dialysis of¹⁰⁹Cd from the soil extracts through cellophane membrane against water proved the presence of organic associates with molecular weights higher than 10⁴. Dialysis against the same, but unlabeled extract was always complete, indicating the reversible (labile) nature of the organic forms of cadmium. Assessment of the stability constants of the organic forms using a simple discrete two-site model suggested that humate and/or fulvate complexes of cadmium were formed.     

Lactic acid production from pretreated corn stover with recycled streams

In order to overcome bottlenecks of the high amount of cellulase consumption in lignocellulosic l-Lactic acid (LA) production, a non-sterilized fed-batch simultaneous saccharification and fermentation (SSF) -membrane separation integration process was established in this current work. During the process, residual cellulase that remaining in the waste aqueous solution and solid residuals of corn stover (CS) were recycled and reused in subsequent fermentations. A total 6 rounds of operation were performed. Averagely, LA yield of 0.389 g g⁻¹ (pretreated CS) was achieved, which was 1.20 times higher than that of the conventional process without waste stream recycling. Moreover, the wastewater discharge and the cost of nutrients for fermentation can also hugely decrease. Results indicated that cellulase, wastewater discharge and nutrients consumption of the process reduced by 47.4 %, 73.7 % and 86.1 %, respectively. This study opens a promising way for the reduction of second-generation LA production cost, which could significantly change the economic feasibility of the LA biorefineries.     

Edaphic mobility of complete humic acid and fractions of high and medium molecular weight

Soil mobility of a complete humic acid and high and medium molecular weight fractions was determined by a soil TLC method. High and medium molecular weight fractions were obtained by ultrafiltration and then labeled with radioiodine. Infrared, visible- and UV spectra, as well as isotachophoretic studies, showed marked differences among the three humic fractions. The results obtained made evident the presence of soil mobile humic fractions of medium molecular weight. Alkalinization increased the soil mobility of humic acid.     

High throughput screening of ultrafiltration and diafiltration processing of monoclonal antibodies via the ambr® crossflow system

As the biopharmaceutical industry moves toward high concentration of monoclonal antibody drug substance, additional development is required early on when material is still limited. A key constraint is the availability of predictive high-throughput low-volume filtration screening systems for bioprocess development. This particularly impacts final stages such as ultrafiltration/diafiltration steps where traditional scale-down systems need hundreds of milliliters of material per run. Recently, the ambr® crossflow system has been commercialized by Sartorius Stedim Biotech (SSB) to meet this need. It enables parallel high throughput experimentation by only using a fraction of typical material requirements. Critical parameters for predictive filtration systems include loading, mean transmembrane pressure (Δ$\overline{P}$ _TMP), and crossflow rate (Q_F). While axial pressure drop (ΔP_axial) across the cartridge is a function of these parameters, it plays a key role and similar values should result across scales. The ambr® crossflow system is first presented describing typical screening experiments. Its performance is then compared to a traditional pilot-scale tangential flow filtration (TFF) at defined conditions. The original ambr® crossflow (CF) cartridge underperformed resulting in ~20x lower ΔP_axial than the pilot-scale TFF flat-sheet cassette. With an objective to improve the scalability of the system, efforts were made to understand this scale difference. The ambr® CF cartridge was successfully modified by restricting the flow of the feed channel, and thus increasing its ΔP_axial. Additional studies across a range of loading (100–823 gm⁻²); Δ$\overline{P}$ _TMP (12–18 psi); and Q_F (4–8 L/min/m²) were conducted in both scales. Comparable flux and aggregate levels were achieved.     

Development of a novel purification method for AAV vectors using tangential flow filtration

Adeno-associated virus (AAV) vector can efficiently transduce therapeutic genes in various tissue types with less side effects; however, owing to complex multistep processes during manufacture, there have been surges in the pricing of recently approved AAV vector-based gene therapy products. This study aimed to develop a simple and efficient method for high-quality purification of AAV vector via tangential flow filtration (TFF), which is commonly used for concentration and diafiltration of solutions during AAV vector purification. We established a novel purification method using TFF and surfactants. Treatment with two classes of surfactants (anionic and zwitterionic) successfully inhibited the aggregation of residual proteins separated from the AAV vector in the crude product by TFF, obtaining a clearance of 99.5% residual proteins. Infectivity of the AAV vector purified using the new method was confirmed both in vitro and in vivo, and no remarkable inflammation or tissue damage was observed in mouse skeletal muscle after local administration. Overall, our proposed method could be used to establish a platform for the purification of AAV vector.     

Use of ultrafiltration/diafiltration for the processing of antisense oligonucleotides

Ultrafiltration/diafiltration (UF/DF) has been the hallmark for concentrating and buffer exchange of protein and peptide-based therapeutics for years. Here we examine the capabilities and limitations of UF/DF membranes to process oligonucleotides using antisense oligonucleotides (ASOs) as a model. Using a 3 kDa UF/DF membrane, oligonucleotides as small as 6 kDa are shown to have low sieving coefficients (<0.008) and thus can be concentrated to high concentrations (≤200 mg/mL) with high yield (≥95%) and low viscosity (<15 centipoise), provided the oligonucleotide is designed not to undergo self-hybridization. In general, the oligonucleotide should be at least twice the reported membrane molecular weight cutoff for robust retention. Regarding diafiltration, results show that a small amount of salt is necessary to maintain adequate flux at concentrations exceeding about 40 mg/mL. Removal of salts along with residual solvents and small molecule process-related impurities can be robust provided they are not positively charged as the interaction with the oligonucleotide can prevent passage through the membrane, even for common divalent cations such as calcium or magnesium. Overall, UF/DF is a valuable tool to utilize in oligonucleotide processing, especially as a final drug substance formulation step that enables a liquid active pharmaceutical ingredient.