Visual pigment evolution in Characiformes: The dynamic interplay of teleost whole‐genome duplication,surviving opsins and spectral tuning

Vision represents an excellent model for studying adaptation, given the genotype‐to‐phenotype map that has been characterized in a number of taxa. Fish possess a diverse range of visual sensitivities and adaptations to underwater light, making them an excellent group to study visual system evolution. In particular, some speciose but understudied lineages can provide a unique opportunity to better understand aspects of visual system evolution such as opsin gene duplication and neofunctionalization. In this study, we showcase the visual system evolution of neotropical Characiformes and the spectral tuning mechanisms they exhibit to modulate their visual sensitivities. Such mechanisms include gene duplications and losses, gene conversion, opsin amino acid sequence and expression variation, and A₁/A₂‐chromophore shifts. The Characiforms we studied utilize three cone opsin classes (SWS2, RH2, LWS) and a rod opsin (RH1). However, the characiform's entire opsin gene repertoire is a product of dynamic evolution by opsin gene loss (SWS1, RH2) and duplication (LWS, RH1). The LWS‐ and RH1‐duplicates originated from a teleost specific whole‐genome duplication as well as characiform‐specific duplication events. Both LWS‐opsins exhibit gene conversion and, through substitutions in key tuning sites, one of the LWS‐paralogues has acquired spectral sensitivity to green light. These sequence changes suggest reversion and parallel evolution of key tuning sites. Furthermore, characiforms' colour vision is based on the expression of both LWS‐paralogues and SWS2. Finally, we found interspecific and intraspecific variation in A₁/A₂‐chromophores proportions, correlating with the light environment. These multiple mechanisms may be a result of the diverse visual environments where Characiformes have evolved.     

Testing whether ensemble modelling is advantageous for maximising predictive performance of species distribution models

Predictive performance is important to many applications of species distribution models (SDMs). The SDM ‘ensemble’ approach, which combines predictions across different modelling methods, is believed to improve predictive performance, and is used in many recent SDM studies. Here, we aim to compare the predictive performance of ensemble species distribution models to that of individual models, using a large presence–absence dataset of eucalypt tree species. To test model performance, we divided our dataset into calibration and evaluation folds using two spatial blocking strategies (checkerboard-pattern and latitudinal slicing). We calibrated and cross-validated all models within the calibration folds, using both repeated random division of data (a common approach) and spatial blocking. Ensembles were built using the software package ‘biomod2’, with standard (‘untuned’) settings. Boosted regression tree (BRT) models were also fitted to the same data, tuned according to published procedures. We then used evaluation folds to compare ensembles against both their component untuned individual models, and against the BRTs. We used area under the receiver-operating characteristic curve (AUC) and log-likelihood for assessing model performance. In all our tests, ensemble models performed well, but not consistently better than their component untuned individual models or tuned BRTs across all tests. Moreover, choosing untuned individual models with best cross-validation performance also yielded good external performance, with blocked cross-validation proving better suited for this choice, in this study, than repeated random cross-validation. The latitudinal slice test was only possible for four species; this showed some individual models, and particularly the tuned one, performing better than ensembles. This study shows no particular benefit to using ensembles over individual tuned models. It also suggests that further robust testing of performance is required for situations where models are used to predict to distant places or environments.     

Decoding Input Signals in Time Domain—A Model Approach

From an observation of efferent interspike intervals of a neuron, we consider how to decode the input temporal information. It is found that the integrate-and-fire model is blind in the temporal domain due to the fact that its efferent firing rate is independent of the input temporal frequency. The conclusion is then confirmed for the integrate-and-fire model with correlated inputs, with reversal potentials, with a nonlinear leakage and with a subthreshold oscillation. For the Hodgkin-Huxley model, however, in terms of efferent firing rates alone, it is possible to read out the input temporal information.     

大鼠听神经单纤维的活动

本文以声压级(SP)的dB值为单位,用不同频率(从音频到超声)的声刺激,对大鼠听觉一级神经元325根单一纤维的活动进行了观察。结果表明:每一纤维都有自己的最佳频率和相应的最低阈值。测得最佳频率的最低值为0.58kHz,最高值为62.6kHz; 最低阈值为6dBSPL,其相应频率为27.49kHz;最敏感的频率范围在20—50kHz。频率-阈值曲线在比最佳频率高的一侧斜度陡峭,低的一侧倾斜缓慢。频率-阈值曲线的锐度若以Q值表示,它对最佳频率分布的回归曲线由最佳频率的低频向高频方向逐渐升高,且Q10,Q20,Q30,Q40,Q50,dB的回归曲线具有相似的倾斜度。绝大多数纤维都有自发放电。给最佳频率持续音作用时,随刺激强度的增强,放电速率增加,但到阈上30dB左右皆达饱和。由各频率的最低阈值绘成的听反应阈曲线与行为测听所得的听力曲线颇为近似。     

Frequency-intensity characteristics of cricket cercal interneurons: units with high-pass functions

Interneurons in the cercal sensory system of crickets respond in a cell-specific manner if the cercal hair sensilla are stimulated by air-particle oscillations at frequencies below about 2000 Hz. We investigated the filter properties of several of these interneurons, and tested the effect of stimulus intensity (typically 0.3–50 mm s⁻¹ peak-to-peak air-particle velocity) on the frequency response in the range 5–600 Hz. We focus on three interneurons (the lateral and medial giant interneurons and interneuron 9-3a) of Acheta domesticus which are characterized by a relatively high sensitivity above ca. 50–200 Hz. The responses of the medial giant interneuron usually increase monotonically with frequency and intensity. Interneuron 9-3a and the lateral giant interneuron exhibit saturation or response decrement at high frequencies and intensities. The lateral giant interneuron has an additional peak of sensitivity below about 40 Hz. Small individual variations in the relative locations of the two response areas of this interneuron within the frequency-intensity field are responsible for a large variability obtained if frequency-response curves are determined for particular intensities. Stimulus frequency does not affect the principal directional preferences of the three interneurons. Nevertheless, if tested individually, the lateral giant interneuron and interneuron 9-3a exhibit small changes of directional tuning. Accepted: 12 November 1997     

Behavioral detection of acoustic particle motion by a teleost fish (Astronotus ocellatus): sensitivity and directionality

The physiology and morphology of auditory interneurons of a fly, the parasitoid Therobia leonidei, are described for the first time. 1. The hearing threshold has been determined with summed recordings of the neck connective. Females are most sensitive in a frequency range from 16 to 40 kHz (thresholds: around 45 dB SPL). This broad hearing range matches with the peak frequencies of the song spectra of host bushcricket species. Male flies are 10–20 dB less sensitive than females. 2. The sensory cells of the prosternal tympanal organ of T. leonidei project into the thoracico-abdominal ganglion complex with arborizations in all three thoracic neuromeres. 3. Three types of ascending auditory interneurons were identified by their morphology and response properties. These have arborizations in all three thoracic neuromeres and terminate soma-contralaterally in the brain. At least three other neuron types were also identified according to response properties alone. The neurons show similar spectral tuning but different sensitivities.     

A broadly tuned odorant receptor in neurons of trichoid sensilla in locust,Locusta migratoria

Insects have evolved sophisticated olfactory reception systems to sense exogenous chemical signals. Odorant receptors (ORs) on the membrane of chemosensory neurons are believed to be key molecules in sensing exogenous chemical cues. ORs in different species of insects are diverse and should tune a species to its own specific semiochemicals relevant to their survival. The orthopteran insect, locust (Locusta migratoria), is a model hemimetabolous insect. There is very limited knowledge on the functions of locust ORs although many locust OR genes have been identified in genomic sequencing experiments. In this paper, a locust OR, LmigOR3 was localized to neurons housed in trichoid sensilla by in situ hybridization. LmigOR3 was expressed as a transgene in Drosophila trichoid olfactory neurons (aT1) lacking the endogenous receptor Or67d and the olfactory tuning curve and dose-response curves were established for this locust receptor. The results show that LmigOR3 sensitizes neurons to ketones, esters and heterocyclic compounds, indicating that LmigOR3 is a broadly tuned receptor. LmigOR3 is the first odorant receptor from Orthoptera that has been functionally analyzed in the Drosophila aT1 system. This work demonstrates the utility of the Drosophila aT1 system for functional analysis of locust odorant receptors and suggests that LmigOR3 may be involved in detecting food odorants, or perhaps locust body volatiles that may help us to develop new control methods for locusts.     

小鼠下丘听觉神经元的方位角灵敏度

声源定位是听觉系统的主要功能之一。下丘作为听觉中脑的重要组成部分,在声源定位的过程中起到非常重要的作用。应用胞外记录方法研究小鼠下丘神经元对自由声场内不同方位声刺激的调谐特性。实验记录了100个下丘神经元,根据神经脉冲发放数与声源方位角关系曲线、最佳方位角(best azimuth, BA)位置和优势方位角范围(preferred azimuth range, PAR),可将其分为4类:对侧极大型神经元占79%,PAR为52.3°;双峰型神经元占14% ,PAR为68.0°;全向型神经元占5%,PAR为169.6°;同侧极大型神经元占2%,PAR为66.5°。实验结果说明,小鼠下丘神经元对方位角有很好的表达,对声源方位有选择性,并表明声音的方位信息在下丘进行了加工整合。本文还就下丘神经元方位编码的机制进行了探讨。     

γ-氨基丁酸能抑制可锐化大棕蝠听皮层神经元频率调谐

本实验使用了 9只成年健康的大棕蝠 (Eptesicusfuscus)。采用双声刺激和多管电极电泳导入荷包牡丹碱 (bicuculline,Bic)的方法 ,研究了γ 氨基丁酸 (γ aminobutyricacid ,GABA)能抑制在锐化听皮层 (primaryauditorycortex ,AC ,即初级听皮层 )神经元频率调谐中的作用。结果发现 :正常AC神经元的频率调谐曲线表现出单峰开放式、多峰开放式和单峰封闭式 3种类型 ;用双声刺激方法研究证实 ,至AC神经元的抑制性输入能被抑制性声刺激所激活 ,且这种神经抑制有自身的最佳频率 ,根据其对兴奋反应的影响程度和系统地改变抑制性声刺激的强度 ,可在兴奋性频率调谐曲线或兴奋区的高频边或 /和低频边测出抑制性频率调谐曲线或抑制区 ;当这种抑制性输入被抑制性声刺激激活后 ,能降低阈上 10dB声强引起的兴奋反应的发放率 ,抑制效率随抑制声刺激强度的增强而加强 ;电泳GABAa受体拮抗剂荷包牡丹碱Bic后 ,可不同程度地去GABA能抑制 ,扩宽频率调谐曲线 ,使多峰调谐曲线变成单峰 ,封闭型变成开放型。表明GABA能抑制参与构成至AC神经元的抑制性输入 ,在正常情况下这种抑制有助于提高中枢听神经元的信号 /噪声比和频率分析能力 ,并锐化频率调谐。因此本结果提示 ,声音的各参量中所包含的信息从外周传入中枢后 ,随着中枢的升