A macrocyclic ellagitannin trimer, oenotherin T(1), from Oenothera species.

Oenotherin T(1) was isolated from leaves of Oenothera tetraptera as a major ellagitannin. Its structure, that of a macrocyclic trimer with a new acyl group, an isodehydrovaloneoyl group, was established. This compound was also produced by callus tissues induced from O. laciniata leaves.     

Comparison of thylakoid structure and organization in sun and shade Haberlea rhodopensis populations under desiccation and rehydration

The resurrection plant, Haberlea rhodopensis can survive nearly total desiccation only in its usual low irradiation environment. However, populations with similar capacity to recover were discovered recently in several sunny habitats. To reveal what kind of morphological, structural and thylakoid-level alterations play a role in the acclimation of this low-light adapted species to high-light environment and how do they contribute to the desiccation tolerance mechanisms, the structure of the photosynthetic apparatus, the most sensitive component of the chlorophyll-retaining resurrection plants, was analyzed by transmission electron microscopy, steady state low-temperature fluorescence and two-dimensional Blue-Native/SDS PAGE under desiccation and rehydration.     

Multimerized CHR-derived peptides as HIV-1 fusion inhibitors

To date, several HIV-1 fusion inhibitors based on the carboxy-terminal leucine/isoleucine heptad repeat (CHR) region of an HIV-1 envelope protein gp41 have been discovered. We have shown that a synthetic peptide mimetic of a trimer form of the CHR-derived peptide C34 has potent inhibitory activity against the HIV-1 fusion mechanism, compared to a monomer C34 peptide. The present study revealed that a dimeric form of C34 is evidently structurally critical for fusion inhibitors, and that the activity of multimerized CHR-derived peptides in fusion inhibition is affected by the properties of the unit peptides C34, SC34EK, and T20. The fluorescence-based study suggested that the N36-interactive sites of the C34 trimer, including hydrophobic residues, are exposed outside the trimer and that trimerization of C34 caused a remarkable increase in fusion inhibitory activity. The present results could be useful in the design of fusion inhibitors against viral infections which proceed via membrane fusion with host cells.     

Synthesis and structure of a zinc(II)-carboxylate trimer containing the π···π stacking, 1,8-naphthalimide synthon: A supramolecular metal-organic framework

The reaction of the bifunctional ligand 3-(1,8-naphthalimido)propanoate (L_C2⁻), which combines a 1,8-naphthalimide strong π···π stacking synthon and a carboxylate donor group, with Zn(O₂CCH₃)₂(H₂O)₂ in methanol yields trimetallic Zn₃(L_C2)₆(MeOH)₄. The solid state structure has a central zinc(II) linked to two equivalent outer zinc(II) by both μ-κ¹ and μ-κ² carboxylate ligands. The two equivalent five-coordinate terminal zinc centers are also bonded to a third nonbridging κ²-carboxylate and to the oxygen atom of a methanol molecule. The central zinc(II) is six-coordinate with the four bridging carboxylate oxygen atoms forming a square planar arrangement and two trans oriented methanol molecules completing the coordination sphere. These trimers are organized into an extended structure exclusively by noncovalent interactions. Two types of strong π···π stacking interactions between sets of three stacked naphthalimide rings from three different trinuclear molecules organize the structure into two-dimensional thick sheets. The third dimension is organized by intermolecular hydrogen bonding interactions between the methanol molecules bonded to the terminal zinc(II) and the free oxygen of the μ-κ¹-carboxylates from adjacent trimeric units. This interaction is supported by weak π···π stacking. Overall the structure is a highly organized supramolecular metal-organic framework (SMOF) solid.     

The effect of deuterium oxide on the stability of the collagen model peptides H‐(Pro‐Pro‐Gly)10‐OH,H‐(Gly‐Pro‐4(R)Hyp)9‐OH,and Type I collagen

The collagen triple helix has a larger accessible surface area per molecular mass than globular proteins, and therefore potentially more water interaction sites. The effect of deuterium oxide on the stability of collagen model peptides and Type I collagen molecules was analyzed by circular dichroism and differential scanning calorimetry. The transition temperatures (T_m) of the protonated peptide (Pro‐Pro‐Gly)₁₀ were 25.4 and 28.7°C in H₂O and D₂O, respectively. The increase of the T_m of (Pro‐Pro‐Gly)₁₀ measured calorimetrically at 1.0°C min^?1 in a low pH solution from the protonated to the deuterated solvent was 5.1°C. The increases of the T_m for (Gly‐Pro‐4(R)Hyp)₉ and pepsin‐extracted Type I collagen were measured as 4.2 and 2.2°C, respectively. These results indicated that the increase in the T_m in the presence of D₂O is comparable to that of globular proteins, and much less than reported previously for collagen model peptides [Gough and Bhatnagar, J Biomol Struct Dyn 1999, 17, 481–491]. These experimental results suggest that the interaction of water molecules with collagen is similar to the interaction of water with globular proteins, when the ratio of collagen to water is very small and collagen is monomerically dispersed in the solvent. © 2009 Wiley Periodicals, Inc. Biopolymers 93: 93–101, 2010. This article was originally published online as an accepted preprint. The “Published Online” date corresponds to the preprint version. You can request a copy of the preprint by emailing the Biopolymers editorial office at biopolymers@wiley.com     

Evidence for the existence of trimeric and monomeric Photosystem I complexes in thylakoid membranes from cyanobacteria

In cyanobacteria, solubilization of thylakoid membranes by detergents yields both monomeric and trimeric Photosystem I (PS I) complexes in variable amounts. We present evidence for the existence of both monomeric and trimeric PS I in cyanobacterial thylakoid membranes with the oligomeric state depending in vitro on the ion concentration. At low salt concentrations (i.e.10 mM MgSO₄) PS I is mainly extracted as a trimer from these membranes and at high salt concentrations (i.e.150 mM MgSO₄) nearly exclusively as a monomer, irrespective of the type of salt used (i.e. mono- or bivalent ions) and the temperature (i.e. 4°C or 20°C). Once solubilized, the PS I trimer is stable over a wide range of ion concentrations (i.e. beyond 0.5 M). A model is presented which suggests a monomer-oligomer equilibrium of PS I, but also of PS II and the cyt. b6/f-complex in the cyanobacterial thylakoid membrane. The possible physiological role of this equilibrium in the regulation of state transitions is discussed.Abbreviations -DM dodecyl--D-maltoside - Chl chlorophyll - cyt. b6f cytochrome b6f complex - EM electron microscopy - HPLC high performance liquid chromatography - LDAO N, N-dimethyl-N-dodecyl amine oxide - MES 4-morpholino ethane sulfonic acid - PAGE polyacrylamide gel electrophoresis - PBS phycobilisome - PS photosystem - SDS sodium dodecyl sulfate - 2D two dimensional - 3D three dimensional     

Structural basis for llama nanobody recognition and neutralization of HIV-1 at the CD4-binding site

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Cryo-EM structure of a DNA-PK trimer: higher order oligomerisation in NHEJ

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HIV-1 neutralizing antibodies elicited in humans by a prefusion-stabilized envelope trimer form a reproducible class targeting fusion peptide

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