Nematode ascaroside enhances resistance in a broad spectrum of plant–pathogen systems

Recognition of specific molecule signatures of microbes, including pathogens, induces innate immune responses in plants, as well as in animals. Analogously, a nematode pheromone, the ascaroside ascr#18, induces hallmark plant defences including activation of (a) mitogen‐activated protein kinases, (b) salicylic acid‐ and jasmonic acid‐mediated defence signalling pathways and (c) defence gene expression and provides protection to a broad spectrum of pathogens. Ascr#18 is a member of an evolutionarily conserved family of nematode signalling molecules and is the major ascaroside secreted by plant–parasitic nematodes. Here, we report the effects of ascr#18 on resistance in four of the major economically important crops: maize, rice, wheat and soybean to some of their associated pathogens. Treatment with low nanomolar to low micromolar concentrations of ascr#18 provided from partial to strong protection in seven of eight plant–pathogen systems tested with viruses, bacteria, fungi, oomycetes and nematodes. This research may have potential to improve agricultural sustainability by reducing use of potentially harmful agrochemicals and enhance food security worldwide.     

Phylostat: a web-based tool to analyze paralogous clade divergence in phylogenetic trees

Phylogenetic trees are useful tools to infer evolutionary relationships between genetic entities. Phylogenetics enables not only evolution-based gene clustering but also the assignment of gene duplication and deletion events to the nodes when coupled with statistical approaches such as bootstrapping. However, extensive gene duplication and deletion events bring along a challenge in interpreting phylogenetic trees and require manual inference. In particular, there has been no robust method of determining whether one of the paralog clades systematically shows higher divergence following the gene duplication event as a sign of functional divergence. Here, we provide Phylostat, a graphical user interface that enables clade divergence analysis, visually and statistically. Phylostat is a web-based tool built on phylo.io to allow comparative clade divergence analysis, which is available at https://phylostat.adebalilab.org under an MIT open-source licence.     

Long-term exclosure of sheep-grazing from an ancient wood: Vegetation change after a sixty-year experiment

Question: An ancient woodland site with a long history of coppicing and heavy grazing was protected from domesticated stock in 1955. Results of a vegetation-monitoring experiment were subsequently published in 1983. This study followed up the original research to investigate whether observed trends were as predicted. These included a shift in tree species composition in favour of shade-tolerant species, beech (Fagus sylvatica) and rowan (Sorbus aucuparia), at the expense of light-demanding birch (Betula spp.) and oak (Quercus petraea agg.), and progress towards a typical woodland ground flora. Location: Peak District National Park, United Kingdom. Methods: The mixed oak–birch woodland was re-surveyed in 2011. Two enclosures (1955 and 1980s) and an unenclosed control area were investigated. Overstorey structure and composition was assessed by measuring canopy openness and the girths of all trees and saplings. Herb layer species composition was also recorded in 28 vegetation plots. Results: We demonstrated a progressive decline in the number of mature oaks and birch in the old enclosure although they still regenerated successfully. Only a few individuals of beech and rowan appeared. Herb layer species composition differed between the subareas but since the 1980s, the temporal change in the old enclosure was negligible. The new enclosure followed a similar pattern in both canopy and herb layer as observed in the early years in the old enclosure. However, the control subarea had no regeneration of woody species and limited ground flora. Conclusions: After nearly 60 years, the replacement of light-demanding dominants by shade-tolerant trees was still limited, probably by low pH and stable light conditions. The findings are pertinent to the impacts of large herbivore grazing (domestic stock or wild) on woodland dynamics.     

川西不同树种人工林对土壤涵水能力的影响

为评价青藏高原东缘不同树种造林对土壤涵水能力的影响,选择立地条件与营林方式相同的4种人工林(连香树(Cercidiphyllum japonicum)、油松(Pinus tabulaeformis)、落叶松(Larix kaempferi)和华山松(Pinus armandii))为研究对象,以落叶阔叶灌丛为对照,比较造林恢复28 a后不同人工林土壤孔隙度及持水性的变化,结合林地凋落物贮量及细根生物量等参数,试图揭示造成不同人工林地土壤涵水能力及潜力差异化的因素。结果显示:营造油松和华山松纯林不仅没能有效改善土壤孔隙状况,反而加剧了土壤涵水功能的退化。相反,连香树和落叶松在代替次生落叶灌丛造林后,土壤容重显著下降,孔隙度增加且小孔隙比例升高,持蓄水能力提高。凋落物及细根特性是不同林地土壤持水性能差异的重要因素。综合分析表明,在对退化生态系统进行造林恢复时,应尽量避免营造高密度针叶纯林,应结合种植有助于土壤结构改良的落叶或阔叶树种。     

The European Federation of Organisations for Medical Physics. Policy Statement No. 7.1: The roles,responsibilities and status of the medical physicist including the criteria for the staffing levels in a Medical Physics Department approved by EFOMP Council on 5th February 2016

This EFOMP Policy Statement is an amalgamation and an update of the EFOMP Policy Statements No. 2, 4 and 7. It presents guidelines for the roles, responsibilities and status of the medical physicist together with recommended minimum staffing levels. These recommendations take into account the ever-increasing demands for competence, patient safety, specialisation and cost effectiveness of modern healthcare services, the requirements of the European Union Council Directive 2013/59/Euratom laying down the basic safety standards for protection against the dangers arising from exposure to ionising radiation, the European Commission’s Radiation Protection Report No. 174: “Guidelines on medical physics expert”, as well as the relevant publications of the International Atomic Energy Agency. The provided recommendations on minimum staffing levels are in very good agreement with those provided by both the European Commission and the International Atomic Energy Agency.     

Protection against cigarette smoke-induced damage to intact transformed rabbit corneal cells by N-acetyl-L-cysteine

In order to assess cigarette smoke-induced oxidative damage to intact cells, an assay was developed to measure cell detachment and protection. Due to the complex nature of cigarette smoke, which contains molecules that can interfere with conventional spectrophotometric and fluorometric biochemical assays, transformed rabbit corneal cells were radiolabeled with tritiated thymidine and then subjected to direct stream smoke. As a result, cell damage in response to the smoke from only two cigarettes could be measured in a time-dependent manner. When cells were prelabeled with N-acetyl-L-cysteine (NAC), a substrate for glutathione synthesis, a significant reduction in damage was measured. Additionally, when buthionine sulfoximine (BSO), an inhibitor of glutathione synthesis, was incubated with cells, a reduction in the effectiveness of NAC was observed, although NAC still retained some activity. Furthermore, vitamin E conferred no protection to cells in this system nor was NAC active in a separate assay that appears to favor peroxyl radical generation. From these results we conclude that cigarette smoke damage can easily be determined at the cellular level with this technique and that NAC acted to prevent this damage in two ways: first, as glutathione precursor and, secondly, as an antioxidant capable of scavenging non-peroxyl radicals.     

DNA barcoding and haplotyping in different species of Andrographis

The genus Andrographis, belonging to the family Acanthaceae, contains several species of medicinal importance. Species, such as Andrographis alata, Andrographis echioides, Andrographis glandulosa, Andrographis lineata, Andrographis nallamalayana and Andrographis paniculata, with several bio-active compounds are being extensively used in folk medicine. However, difference of opinion exists with regard to inclusion of the species echioides into the genus Andrographis. The present study, using rbcL and matK sequences, for the first time established DNA barcodes for these six species. The nucleotide sequence of rbcL provided species-specific haplotypes for A. alata, A. lineata, and A. paniculata. Despite the differences with regard to nucleotide sequence, all the six species showed conserved amino acid sequence. However, all the six species showed distinct haplotypes in nucleotide sequence of matK and facilitated the identification and discrimination of these species. The phylogenetic tree generated with combined sequence of rbcL and matK revealed grouping of all the six species into a single clade confirming the positioning of the species echioides into the genus Andrographis.