泸型酒酒醅中梭菌群落的发酵演替规律和功能预测

【目的】研究泸型酒酒醅中梭菌(Clostridia)群落的演替规律,探讨梭菌群落在酒醅发酵过程中的潜在功能。【方法】利用实时荧光定量PCR技术结合高通量测序技术研究不同发酵时间泸型酒酒醅中梭菌丰度变化;通过梭菌16S r RNA基因序列高通量测序数据分析揭示梭菌群落演替规律,并运用LEf Se分析找出标志性OTU;通过PICRUSt分析对梭菌功能组成进行预测。【结果】泸型酒发酵过程酒醅中梭菌的生物量在发酵14 d上升至最高(3.46×10~7 copies/g),梭菌占总细菌的相对丰度在发酵20 d达到最高(6.67%);对梭菌群落结构的聚类分析结果表明,发酵7 d的酒醅梭菌群落结构显著区别于其他发酵时间,主要体现为存在17个标志性OTU,其中大部分分类学地位尚不明确;PICRUSt分析显示梭菌主要参与氨糖与核糖代谢、磷酸戊糖途径,其次是果糖和甘露糖代谢、TCA循环、糖酵解途径、丙酸及丁酸代谢。【结论】泸型酒酒醅中梭菌的生物量和占细菌的相对丰度在发酵开始后的2-3周内逐渐达到最高,而梭菌群落的结构则在发酵1周内便发生了显著改变,并在发酵2-3周内趋于稳定。在发酵2-3周时有较多与丙酸、丁酸等风味物质代谢相关的基因在酒醅梭菌中被预测到。     

贺兰山保护区冬季岩羊集群特征的初步分析

Group size and composition of blue sheep （Pseudois nayaur) were studied in the Helan Mountains, Ningxia Autonomous Region from November to December 2003. We scanned mountain slopes with binoculars and observed with 20 - 60 x spotting-scope. A total of 310 herds of blue sheep and 1 336 individuals were observed during the study period. Blue sheep were frequently seen in small herds of 2 to 8 individuals, which represent 94.8% of total herds observed. Herds consisting of 9 individuals or more represented 5.2%. The largest herd we observed numbered 51 individuals. Mean group size was 4.2 individuals. Blue sheep herds can be divided into three types: male herds （composed solely of males), female herds (consisting of females with or without juveniles of both sexes), and mixed herds （including adult males, females, and subadults). Among the 310 herds, female herds were counted 150 times (48.4%}, mixed herds 154 times (49.7%), and male berds 6 times (1.9%) . Of 1 336 blue sheep classified by sex and age, adults, subadults and juveniles composed 64.1%, 20.8%, and 15.1% respectively. The female: male ratio of adults was 1:0.73. The ratio of adult females to juveniles was 1:0.56, which is higher than the ratio recorded in spring （ 1:0.43) or summer （ 1:0.44). The results showed that the Helan Mountains State Nature Reserve has succeed in protecting blue sheep.     

伏牛山森林生态系统灌木植物功能群分类

伏牛山国家级自然保护区位于中国东部亚热带和暖温带的过渡区,植被优势种明显,以灌木优势种为主体进行植物功能群分类,可以对森林生态系统的功能、框架结构及类群分布有一个明确的认识.采用群落生态学的调查方法,在伏牛山南北坡设置66个典型样方.根据调查结果,通过计算重要值,选取优势度相对较大的灌木树种进行种间联结及相关性分析,以X2(卡方)检验为基础,结合联结系数AC和共同出现百分率PC来测定灌木优势种间的联结性,根据优势种间的联结性及其在海拔梯度上的变化异同来划分植物功能群,把灌木优势种划分为7组植物功能群.植物功能群间物种表现出显著正联结,一起在同一生境中出现的几率较大,在长期的生长演化过程中,能适应相似的资源环境和对干扰有相似的响应,所以将其划分同一组植物功能群.植物功能群内有一些重要的形态特征有相似之处,功能群间的形态特征有明显的区别,如叶片的大小、形状等,功能群的这些相似及区别还需要生理生态学的进一步研究.     

北京市绿化树种紫玉兰的蒸腾特征及其影响因素

加快的城市绿化,尤其是干旱和半干旱的温带和热带地区,对水的大量需求给未来水资源的合理利用提出了严峻挑战。了解紫玉兰蒸腾特征及环境和生物因子对蒸腾的调控有助于城市绿化树种的选择和养护。2008.5－2009.5于北京市中心教学植物园内利用热消散技术研究不同时间尺度上15年生紫玉兰（Magnolia liliflora）的耗水特征,环境因子同步监测。本研究分析了紫玉兰小时、日、月和季节尺度上的蒸腾特征。日尺度上,春夏季节紫玉兰树干液流速率呈双峰型曲线,蒸腾午休现象明显;秋季树干液流速率呈单峰型曲线,液流启动时间延后而结束时间提前;冬季树干液流速率日变化格局不明显,夜间液流速率高于白天液流速率。年内尺度上,按月份,从3月开始上升,5月达到峰值后略有下降,9月开始显著降低;按季节,春季>夏季>秋季>冬季;按物候期,从发芽到开花展叶阶段,整树耗水迅速增加,叶速生期达到最大值,休眠期整树耗水显著降低。值得注意的是：紫玉兰蒸腾午休现象明显;春季耗水型树种。一天之中总辐射和水汽压亏缺是影响紫玉兰整树耗水的主要因子;加上大气温度是日尺度和月尺度上影响紫玉兰耗水的关键因子;叶面积指数在开花展叶期是影响紫玉兰耗水的关键因子。由于城市中的适时灌溉和研究期间降水充足,土壤水分对紫玉兰的耗水几乎没有影响。     

植物功能型及其生态学意义

植物功能型是近年来在全球变化研究中引入的一个新的生态学术语,综 植物功能型概念的由来、划分植物及其生态学意义,用系统生物学的理论与方法理解植物功能型,并指出了植物功能型在全球变化研究中的意义。     

渤海浮游动物群落生态特点Ⅰ.种类组成与群落结构

以１９５９年全国海洋普查浮游动物中网周年标本为材料,对渤海浮游动物的群落结构进行分析。渤海浮游动物群落以近岸广温种为主,主要优势种包括小拟哲水蚤（Ｐａｒａｃａｌａｎｕｓ ｐａｒｖｕｓ）、双毛纺锤水蚤（Ａｃａｒｔｉａ ｂｉｆｉｌｏｓａ）、强额拟哲水蚤（Ｐａｒａｃａｌａｎｕｓ ｃｒａｓｓｉｒｏｓｔｒｉｓ）、拟长腹剑水蚤（Ｏｉｔｈｏｎａ ｓｉｍｉｌｉｓ）、墨氏胸刺水蚤（Ｃｅｎｔｒｏｐａｇｅｓ ｍｃｍｕｒ     

小鼠肝脏免疫抑制蛋白质(LISP)的分离纯化和鉴定

用硫酸铵分段盐析及DEAE-Sephadex A-50、羟磷灰石和CM纤维素等多种柱层析方法,从正常小鼠肝浸液中分离纯化出一种免疫抑制蛋白质(LISP)。在体外用微量该蛋白质就能强烈抑制小鼠T、B淋巴细胞对促有丝分裂原和同种异型抗原的增生反应。纯化的蛋白质在聚丙烯酰胺凝胶电泳(PACE)和等电聚焦(IEF)鉴定时均显示为一条区带,其等电点(pI)值在7.5—7.8范围。沉降系数利S_(20),w为5.39。Sephadex G-100凝胶层析测得LISP的分子量为78,000道尔顿。十二烷基硫酸钠-聚丙烯酰胺凝胶电泳(SDS-PAGE)提示LISP是由二个相同的亚基组成,亚基分子量为38,500道尔顿。LISP是一种既非糖蛋白又非脂蛋白的碱性蛋白质,对它的氨基酸组成也作了分析。     

Macromolecular docking of a three-body system: the recognition of human growth hormone by its receptor.

Human growth hormone (hGH) binds to its receptor (hGHr) in a three-body interaction: one molecule of the hormone and two identical monomers of the receptor form a trimer. Curiously, the hormone-receptor interactions in the trimer are not equivalent and the formation of the complex occurs in a specific kinetic order (Cunningham BC, Ultsch M, De Vos AM, Mulkerrin MG, Clauser KR, Wells JA, 1991, Science 254:821-825). In this paper, we model the recognition of hGH to the hGHr using shape complementarity of the three-dimensional structures and macromolecular docking to explore possible binding modes between the receptor and hormone. The method, reported previously (Hendrix DK, Kuntz ID, 1998, Pacific symposium on biocomputing 1998, pp 1234-1244), is based upon matching complementary-shaped strategic sites on the molecular surface. We modify the procedure to examine three-body systems. We find that the order of binding seen experimentally is also essential to our model. We explore the use of mutational data available for hGH to guide our model. In addition to docking hGH to the hGHr, we further test our methodology by successfully reproducing 16 macromolecular complexes from X-ray crystal structures, including enzyme-inhibitor, antibody-antigen, protein dimer, and protein-DNA complexes.