In vitro propagation ofMitragyna parvifolia Korth.

Multiple shoot formation and their elongation from excised apical vegetative shoots of a 40-year old-tree ofMitragyna parvifolia Korth. was achieved in Murashige and Skoog's medium supplemented with 4.44 M benzyl adenine. The in vitro regenerated shoots rooted when cultured on modified Murashige and Skoog's medium containing low inorganic salts and the three auxins. Regeneration by this method was suitable for mass propagation of the plant.     

The effects of guanine and cytosine variation on dinucleotide frequency and amino acid composition in the human genome

Summary One hundred twelve human DNA sequences were analyzed with respect to dinucleotide frequency and amino acid composition. The variation in guanine and cytosine (G+C) content revealed: (1) at 2–3 and 3-1 doublet positions CG discrimination is attenuated at high G+C, but TA disfavor is enhanced, and (2) several amino acids are subject to G+C change. These findings have been reported in part for collections of sequences from various species. The present study confirms that in a single organism-the human-the G+C effects do exist. Aspects of the argument that connects G+C with protein thermal stability are also discussed.     

A flexible method to align large numbers of biological sequences

Summary A method for the alignment of two or more biological sequences is described. The method is a direct extension of the method of Taylor (1987) incorporating a consensus sequence approach and allows considerable freedom in the control of the clustering of the sequences. At one extreme this is equivalent to the earlier method (Taylor 1987), whereas at the other, the clustering approaches the binary method of Feng and Doolittle (1987). Such freedom allows the program to be adapted to particular problems, which has the important advantage of resulting in considerable savings in computer time, allowing very large problems to be tackled. Besides a detailed analysis of the alignment of the cytochrome c superfamily, the clustering and alignment of the PIR sequence data bank (3500 sequences approx.) is described.     

Biostratinomy and functional morphology of enrollment in two Middle Devonian trilobites

Although it is common knowledge that many trilobites enrolled, behavioral and functional aspects of enrollment are not at all well understood. Taphonomic details portrayed by enrolled trilobites in the Middle Devonian Hamilton Group (New York State) indicate that enrollment was a complex and morphologically constrained behavior. The trilobites Phacops rana (Green) and Greenops boothi (Green) are frequently enrolled in Hamilton strata; biostratinomic data indicate two very different enrollment postures. Interlocking morphologies (coaptative devices) and apodeme structure and disposition indicate that these postures reflect specific behaviors which involved interaction between tergal structures, inferred musculature, and the substratum. Phacops enrolled by burrowing forward and down into the sediment; dorsal muscles, attached to prominent articulating half-rings, imbricated the thorax such that each lappet overlapped the next posterior segment and locked into a posterior pleural facet. The pygidium was brought into place as the posterior segments of the thorax were placed into vincular notches along the lateral margin of the ventral cephalon. The pygidium locked with the cephalic vincular furrow to complete ‘perfect sphaeroidal’ closure. Greenops enrolled with the cephalon in an upright position at the sediment surface; a submarginal furrow on the ventral surface of the pygidium received the anterior rim of the cephalon. Relatively narrow articulating half-rings limited pleural rotation. Segments were loosely locked into narrow facets at the anterior margin of the next posterior lappet. In spite of rudimentary lappet and half-ring structures, Greenops displays an elaborate system of thoracopygidial muscles which involved dorsoventral and longitudinal attachments along the thorax and into the pygidium. Phacops, in contrast, displays very poorly developed apodemes which occur in the thorax only. Longitudinal muscle strength was likely less important during Phacops enrollment than is evident for the Greenops enrollment procedure. Conversely, Phacops clearly relied to a great degree upon competent closure devices which are poorly developed in Greenops. Biostratinomic data reveal different enrollment behaviors which reflect the function of different enrollment-related morphologies present in each species.     

Functional morphology of synarthrial articulations in the crinoid stem

Synarthrial fulcral ridges are found in crinoid columnals from the mid-Ordovician to the present and in all four subclasses. Similar articulations did not become common in the cirri until the Mesozoic. Synarthrial stem articulations fall into two broad groups. Type I articulations have a fulcral ridge in the centre of the articular facet. In elliptical ossicles this ridge corresponds to either the long (IA) or short (IB) axis of the facet. Although both are functionally similar, Type IA ossicles are more common. Type II articulations have an excentric fulcral ridge, parallel to either the long (IIA) or short (IIB) axis of the articular facet. Type IIA articulations are found in crinoid stems capable of coiling. Type II articulations are particularly common in the cirri of articulates and are well adapted for attachment to hard and soft substrates. Columnals with Type I articulations often have divergent fulcra, giving the stem flexibility in all directions, but this feature is not seen in cirri or in coiled stems, where it would impair normal functions. Only the cirri of isocrinids and comatulids are muscular, so the movement of columns with fulcra must be passive.     

Proteolysis of ribulose-1,5-bisphosphate carboxylase/oxygenase in leaves of Citrus explants throughout the annual cycle and its regulation by ethylene

Leaf senescence and ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBP carboxylase, EC 4.1.1.39) degradation in orange [ Citrus sinensis (L.) Osbeck cv. Washington Navel] explants have been investigated. Explants consisted of a segment of stem (ca 15 cm) and 5 mature leaves. In vitro RuBP carboxylase degradation was determined by culturing the explants in water for different periods of time (3 days usually) and quantifying the two RuBP carboxylase subunits in the extracts following sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). In vitro RuBP carboxylase degradation was estimated by autodigestion of leaf extracts and SDS-PAGE. The extent of in vivo RuBP carboxylase degradation in explants cultured under 16 h light/8 h dark photoperiod varied throughout the year and showed a cyclic behaviour correlated with the growth cycle of Citrus. The highest proteolytic activity both in vivo and in vitro was found in explants made from April to August coinciding with the maximum vegetative growth period of the tree.
Leaf senescence and abscission could be retarded significantly at any time of the year by maintaining the explants continuously in the dark. Treatment of the explants in the dark with a continuous flow of ethylene enhanced both leaf abscission and rate of RuBP carboxylase degradation, proportionally to ethylene concentration (0.1-0.6 ppm). Ethylene-induced senescence of Citrus leaf explants in the dark appears to be a convenient model system to study the regulation of the proteolytic degradation of RuBP carboxylase.     

The influence of ambient temperature,seed composition and body size on water balance and seed selection in coexisting heteromyid rodents

Summary The water balance of three different sized coexisting species of heteromyid rodents (Dipodomys merriami ca. 39 g;Perognathus fallax ca. 23 g;Perognathus longimembris ca. 9 g) was assessed while consuming two different diets (either wheat or hulled sunflower) at ambient temperatures of 15–30°C. The metabolism of wheat as the sole food source was calculated to provide a greater metabolic water production (MWP) than the consumption of sunflower seed because of their different composition. The state of water balance was assessed by measuring urine concentrations and body weight maintenance on each diet at each temperature. Both measures showed that (i) all species were able to maintain a more positive water on the higher MWP seed, (ii) for all species there was an ambient temperature above which water balance could no longer be maintained, (iii) that this temperature was higher with the higher MWP food source and (iv) water regulatory efficiency was negatively correlated with body mass.Dipodomys showed a reduced digestive efficiency compared toPerognathus. When presented with both seedsDipodomys showed no preference for either seed irrespective of the state of water balance whilst thePerognathus species showed a tendency for an increased preference for the high MWP food source at the higher ambient temperatures. The ecological implications of these findings are discussed.     

Total root length as estimated from small sub-samples

A method is proposed for estimating the total length of a root system from sub-samples. This method is based on the measurement of the length and diameter of small pieces of roots, and on the measurements of the bulk density of root sub-samples. It is assumed that roots are cylinders with a given bulk density. The length and diameter of small root pieces are measured by image analysis. A weighted quadratic mean (W.Q.M.) root diameter is then calculated and used in estimating the root length. This W.Q.M. diameter is defined as the real mean diameter of an equivalent single root with the same length and volume as the tested root system. The accuracy of prediction is demonstrated for one theoretical root system. The standard deviation of estimation can be calculated using sampling simulations.     

The compositional distribution of coding sequences and DNA molecules in humans and murids

Summary The compositional distributions of coding sequences and DNA molecules (in the 50-100-kb range) are remarkably narrower in murids (rat and mouse) compared to humans (as well as to all other mammals explored so far). In murids, both distributions begin at higher and end at lower GC values. A comparison of homologous coding sequences from murids and humans revealed that their different compositional distributions are due to differences in GC levels in all three codon positions, particularly of genes located at both ends of the distribution. In turn, these differences are responsible for differences in both codon usage and amino acids. When GC levels at first+second codon positions and third codon positions, respectively, of murid genes are plotted against corresponding GC levels of homologous human genes, linear relationships (with very high correlation coefficients and slopes of about 0.78 and 0.60, respectively) are found. This indicates a conservation of the order of GC levels in homologous genes from humans and murids. (The same comparison for mouse and rat genes indicates a conservation of GC levels of homologous genes.) A similar linear relationship was observed when plotting GC levels of corresponding DNA fractions (as obtained by density gradient centrifugation in the presence of a sequence-specific ligand) from mouse and human. These findings indicate that orderly compositional changes affecting not only coding sequences but also noncoding sequences took place since the divergence of murids. Such directional fixations of mutations point to the existence of selective pressures affecting the genome as a whole.     

Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs)

Summary Preliminary analysis using nuclear RFLPs provided evidence that subspecies within Brassica rapa originated from two different centers. One center is in Europe, represented by turnip and turnip rape from which the oilseed sarson was derived. A second center is in South China containing a variety of Chinese vegetables of which pak choi and narinosa seem to be the most ancient forms. Based on RFLP data, the accessions of B. oleracea examined could be divided into three distinct groups, represented by thousand head kale, broccoli and cabbage. Thousand head kale and Chinese kale appear to be the primitive types. Observations of parallel variation among subspecies of both species are discussed.