Evidence for deviations from uniform changes in a Portuguese watershed illustrated by CORINE maps: An Intensity Analysis approach

We apply a method to evaluate the strength of the evidence for deviations from uniform land change in a coastal area, in the context of Intensity Analysis. The errors in the CORINE maps at 1990 and 2006 can influence the apparent change, but the errors are unknown because error assessment of the 1990 map has never been released, while the error of the 2006 map has been checked for only some countries. The 1990 and the 2006 maps of a coastal watershed in Portugal served as the data to compute the intensities of changes among eight categories. We evaluate the sizes and types of errors that could explain deviations from uniform intensities. Errors in 2.0% of the 2006 map can explain all apparent deviations from uniform gains. Errors in 1.5% of the 1990 map can explain all apparent deviations from uniform losses. Errors in less than 0.7% of the 1990 map can explain all apparent deviations from uniform transitions to each gaining category. We analyse the strength of the evidence for deviations from uniform intensities in light of historical processes of change. Historical processes can explain some transitions that the data show, while the hypothesised errors in the data are the explanation for other transitions that are not consistent with known processes. Inconsistent transitions are an indication of the misclassification errors that could propagate to other land cover change applications, as in the assessment of hydrological processes.     

豌豆核糖体小亚基蛋白S21的cDNA克隆、序列分析及在G2豌豆中的表达研究

以G2豌豆幼苗为材料,构建了滴度为6.5×106pfu的cDNA文库,用同源序列筛选法从该文库中得到一个全长465bp的cDNA。杂交分析认为它是一完整的cDNA序列。DNA序列分析表明,它拥有一个282bp的开放读码框,编码94个氨基酸。计算机同源序列比较发现,它可能编码豌豆核糖体小亚基蛋白S21(RS21-PEA),因为该序列与已知的玉米、水稻S21在氨基酸全序列水平上有32%～35%的同源性,并含有与RNA结合的特征结构域。进化树分析显示S21蛋白可在一定程度上反映生物的进化及遗传变异趋势。     

深圳市大鹏半岛土地利用变化对植被覆盖动态的影响

城市化背景下的植被覆盖动态研究对于区域生态保护工作具有重要的指导意义.利用深圳市1995-2007年的遥感数据以及1996和2007年土地变更调查资料,基于归一化植被指数轨迹追踪分析和叠图代数计算方法,对大鹏半岛植被覆盖动态类型及其空间分异、土地利用变化结构和格局特征以及土地利用变化与植被覆盖动态之间的响应关系进行研究.结果表明：1995-2007年,研究区65%的地区植被覆盖发生显著改变,植被覆盖状况总体趋于好转;城市化和商品农业发展是该区土地利用动态变化的主要成因,研究时段内31%的地表发生了用地功能转变;土地利用变化是区内植被覆盖发生改变的重要成因之一,约35%的植被覆盖出现退降过程区域与土地功能转变有关;55%的用地功能转变区域因机械干扰导致植被覆盖退化,但至研究期末,大多数退化区域已经进入植被覆盖显著改善阶段.     

DNA barcoding and haplotyping in different species of Andrographis

The genus Andrographis, belonging to the family Acanthaceae, contains several species of medicinal importance. Species, such as Andrographis alata, Andrographis echioides, Andrographis glandulosa, Andrographis lineata, Andrographis nallamalayana and Andrographis paniculata, with several bio-active compounds are being extensively used in folk medicine. However, difference of opinion exists with regard to inclusion of the species echioides into the genus Andrographis. The present study, using rbcL and matK sequences, for the first time established DNA barcodes for these six species. The nucleotide sequence of rbcL provided species-specific haplotypes for A. alata, A. lineata, and A. paniculata. Despite the differences with regard to nucleotide sequence, all the six species showed conserved amino acid sequence. However, all the six species showed distinct haplotypes in nucleotide sequence of matK and facilitated the identification and discrimination of these species. The phylogenetic tree generated with combined sequence of rbcL and matK revealed grouping of all the six species into a single clade confirming the positioning of the species echioides into the genus Andrographis.     

Latitudinal Variation in Leaf and Tree Traits of the Mangrove Avicennia germinans (Avicenniaceae) in the Central Region of the Gulf of Mexico

The variation in leaf mass per area, leaf nutrients (% carbon, nitrogen and phosphorus), and the allometric relation between tree height and diameter of the black mangrove, Avicennia germinans, were explored in nine mangrove forests in similar environments along a 5° latitudinal gradient in the central region of the Gulf of Mexico, as indicated by a southward increase in temperature and precipitation. There was no correlation between leaf nitrogen or phosphorus content and latitude. Leaf mass per area and leaf carbon content were positively correlated with latitude and negatively correlated with temperature and annual rainfall, whereas asymptotic tree height and maximum diameter showed the opposite trend. Such patterns suggest a trade-off between leaf traits and tree size which may be constrained by the same environmental factors along a dry-cold to humid-warm latitudinal gradient.     

The mycobiome of Australian tree hollows in relation to the Cryptococcus gattii and C. neoformans species complexes

Cryptococcosis is a fungal infection caused by members of the Cryptococcus gattii and C. neoformans species complexes. The C. gattii species complex has a strong environmental association with eucalypt hollows (particularly Eucalyptus camaldulensis), which may present a source of infection. It remains unclear whether a specific mycobiome is required to support its environmental survival and growth. Conventional detection of environmental Cryptococcus spp. involves culture on differential media, such as Guizotia abyssinica seed agar. Next‐generation sequencing (NGS)‐based culture‐independent identification aids in contextualising these species in the environmental mycobiome. Samples from 23 Australian tree hollows were subjected to both culture‐ and amplicon‐based metagenomic analysis to characterize the mycobiome and assess relationships between Cryptococcus spp. and other fungal taxa. The most abundant genera detected were Coniochaeta, Aspergillus, and Penicillium, all being commonly isolated from decaying wood. There was no correlation between the presence of Cryptococcus spp. in a tree hollow and the presence of any other fungal genus. Some differences in the abundance of numerous taxa were noted in a differential heat tree comparing samples with or without Cryptococcus‐NGS reads. The study expanded the known environmental niche of the C. gattii and C. neoformans species complexes in Australia with detections from a further five tree species. Discrepancies between the detection of Cryptococcus spp. using culture or NGS suggest that neither is superior per se and that, rather, these methodologies are complementary. The inherent biases of amplicon‐based metagenomics require cautious interpretation of data through consideration of its biological relevance.     

Exploring the limiting causes of fruit production in the tropical tree Ipomoea wolcottiana Rose (Convolvulaceae)

Path analysis was used to evaluate a group of variables related to fruit production in the tropical tree Ipomoea wolcottiana (Convolvulaceae). The variables were tree size (trunk diameter), available phosphorus in the soil, floral phenotypic sex expression (i.e. gynoecium biomass allocation), flower production, fruits initiated, and length of the corolla and diameter of its opening. The path model explained 79.9% of the total variation, and the production of mature fruits was related in large part by the number of fruits initiated and by phenotypic sex expression. In turn, fruits initiated were related to corolla tube diameter and to a lesser extent to corolla tube length. The model could explain a low percentage of the variation (18.5%) of the number of fruits initiated, but once a fruit was initiated it had a high probability of maturing. Phenotypic sex expression related negatively to the number of flowers produced and positively, to almost the same degree, to available phosphorus in the soil. Tree size had a positive effect on flower production but a negligible effect on fruits initiated and matured. Soil phosphorus affected positively, although weakly all variables. The relationships between tree size, number of flowers and phenotypic sex expression suggested that abundant flowering in this species functions more for pollen donation than its reception.     

一类阔叶树叶面积的通用公式测算法

本文在观察和测算的基础上,提出了一类阔叶树的叶形方程,并对方程进行积分,求出了计算这类阔叶树叶面积的通用公式。从1980年应用至今证明,用这个通用公式计算这类阔叶树的面积,方便、简捷、精度高,现介绍如下。