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41.
Minter NJ Mángano MG Caron JB 《Proceedings. Biological sciences / The Royal Society》2012,279(1733):1613-1620
The first arthropod trackways are described from the Middle Cambrian Burgess Shale Formation of Canada. Trace fossils, including trackways, provide a rich source of biological and ecological information, including direct evidence of behaviour not commonly available from body fossils alone. The discovery of large arthropod trackways is unique for Burgess Shale-type deposits. Trackway dimensions and the requisite number of limbs are matched with the body plan of a tegopeltid arthropod. Tegopelte, one of the rarest Burgess Shale animals, is over twice the size of all other benthic arthropods known from this locality, and only its sister taxon, Saperion, from the Lower Cambrian Chengjiang biota of China, approaches a similar size. Biomechanical trackway analysis demonstrates that tegopeltids were capable of rapidly skimming across the seafloor and, in conjunction with the identification of gut diverticulae in Tegopelte, supports previous hypotheses on the locomotory capabilities and carnivorous mode of life of such arthropods. The trackways occur in the oldest part (Kicking Horse Shale Member) of the Burgess Shale Formation, which is also known for its scarce assemblage of soft-bodied organisms, and indicate at least intermittent oxygenated bottom waters and low sedimentation rates. 相似文献
42.
Verona Vandieken Michael Pester Niko Finke Jung-Ho Hyun Michael W Friedrich Alexander Loy Bo Thamdrup 《The ISME journal》2012,6(11):2078-2090
Dissimilatory manganese reduction dominates anaerobic carbon oxidation in marine sediments with high manganese oxide concentrations, but the microorganisms responsible for this process are largely unknown. In this study, the acetate-utilizing manganese-reducing microbiota in geographically well-separated, manganese oxide-rich sediments from Gullmar Fjord (Sweden), Skagerrak (Norway) and Ulleung Basin (Korea) were analyzed by 16S rRNA-stable isotope probing (SIP). Manganese reduction was the prevailing terminal electron-accepting process in anoxic incubations of surface sediments, and even the addition of acetate stimulated neither iron nor sulfate reduction. The three geographically distinct sediments harbored surprisingly similar communities of acetate-utilizing manganese-reducing bacteria: 16S rRNA of members of the genera Colwellia and Arcobacter and of novel genera within the Oceanospirillaceae and Alteromonadales were detected in heavy RNA-SIP fractions from these three sediments. Most probable number (MPN) analysis yielded up to 106 acetate-utilizing manganese-reducing cells cm−3 in Gullmar Fjord sediment. A 16S rRNA gene clone library that was established from the highest MPN dilutions was dominated by sequences of Colwellia and Arcobacter species and members of the Oceanospirillaceae, supporting the obtained RNA-SIP results. In conclusion, these findings strongly suggest that (i) acetate-dependent manganese reduction in manganese oxide-rich sediments is catalyzed by members of taxa (Arcobacter, Colwellia and Oceanospirillaceae) previously not known to possess this physiological function, (ii) similar acetate-utilizing manganese reducers thrive in geographically distinct regions and (iii) the identified manganese reducers differ greatly from the extensively explored iron reducers in marine sediments. 相似文献
43.
Ragunath C Manuel SG Venkataraman V Sait HB Kasinathan C Ramasubbu N 《Journal of molecular biology》2008,384(5):1232-1248
Human salivary α-amylase (HSAmy) has three distinct functions relevant to oral health: (1) hydrolysis of starch, (2) binding to hydroxyapatite (HA), and (3) binding to bacteria (e.g., viridans streptococci). Although the active site of HSAmy for starch hydrolysis is well-characterized, the regions responsible for bacterial binding are yet to be defined. Since HSAmy possesses several secondary saccharide-binding sites in which aromatic residues are prominently located, we hypothesized that one or more of the secondary saccharide-binding sites harboring the aromatic residues may play an important role in bacterial binding. To test this hypothesis, the aromatic residues at five secondary binding sites were mutated to alanine to generate six mutants representing either single (W203A, Y276A, and W284A), double (Y276A/W284A and W316A/W388A), or multiple [W134A/W203A/Y276A/W284A/W316A/W388A; human salivary α-amylase aromatic residue multiple mutant (HSAmy-ar)] mutations. The crystal structure of HSAmy-ar as an acarbose complex was determined at a resolution of 1.5 Å and compared with the existing wild-type acarbose complex. The wild-type and the mutant enzymes were characterized for their abilities to exhibit enzyme activity, starch-binding activity, HA-binding activity, and bacterial binding activity. Our results clearly showed that (1) mutation of aromatic residues does not alter the overall conformation of the molecule; (2) single or double mutants showed either moderate or minimal changes in both starch-binding activity and bacterial binding activity, whereas HSAmy-ar showed significant reduction in these activities; (3) starch-hydrolytic activity was reduced by 10-fold in HSAmy-ar; (4) oligosaccharide-hydrolytic activity was reduced in all mutants, but the action pattern was similar to that of the wild-type enzyme; and (5) HA binding was unaffected in HSAmy-ar. These results clearly show that the aromatic residues at the secondary saccharide-binding sites in HSAmy play a critical role in bacterial binding and in starch-hydrolytic functions of HSAmy. 相似文献
44.
Abstract: The use of bird counts as indices has come under increasing scrutiny because assumptions concerning detection probabilities may not be met, but there also seems to be some resistance to use of model-based approaches to estimating abundance. We used data from the United States Forest Service, Southern Region bird monitoring program to compare several common approaches for estimating annual abundance or indices and population trends from point-count data. We compared indices of abundance estimated as annual means of counts and from a mixed-Poisson model to abundance estimates from a count-removal model with 3 time intervals and a distance model with 3 distance bands. We compared trend estimates calculated from an autoregressive, exponential model fit to annual abundance estimates from the above methods and also by estimating trend directly by treating year as a continuous covariate in the mixed-Poisson model. We produced estimates for 6 forest songbirds based on an average of 621 and 459 points in 2 physiographic areas from 1997 to 2004. There was strong evidence that detection probabilities varied among species and years. Nevertheless, there was good overall agreement across trend estimates from the 5 methods for 9 of 12 comparisons. In 3 of 12 comparisons, however, patterns in detection probabilities potentially confounded interpretation of uncorrected counts. Estimates of detection probabilities differed greatly between removal and distance models, likely because the methods estimated different components of detection probability and the data collection was not optimally designed for either method. Given that detection probabilities often vary among species, years, and observers investigators should address detection probability in their surveys, whether it be by estimation of probability of detection and abundance, estimation of effects of key covariates when modeling count as an index of abundance, or through design-based methods to standardize these effects. 相似文献
45.
Ngure RM Karanja SM Mungatana NK Wamae CN Ngotho JM Gichuki CW 《Journal of medical primatology》2008,37(4):210-214
BACKGROUND: Thirty-four wild Chlorocebus aethiops monkeys were trapped for research purposes. METHODS: During routine quarantine check-up, cerebrospinal fluid (CSF) and blood were microscopically examined for parasites. Estimations of CSF protein levels were made by the biuret method and the white cell counts by the hemocytometer. RESULTS: Seven monkeys demonstrated microfilariae in blood and CSF. This was accompanied by a two- and ninefold increase in CSF total protein and white cell counts, respectively. Necropsy of one of the blood and CSF microfilariae-positive animals revealed the presence of adult worms in the brain meninges. The parasites were identified as the zoonotic filaroid nematode Meningonema peruzii. CONCLUSIONS: Wild C. aethiops monkeys developed CSF changes resulting, most probably, from infection with M. peruzii. Moreover, the monkeys could be acting as an important reservoir. The study highlights the need for epidemiological and pathogenological studies of this parasite, which is of public health significance. Moreover, C. aethiops proved to be a useful primate model for the study of this zoonotic infection. 相似文献
46.
Chris A. M. van Swaay Piotr Nowicki Josef Settele Arco J. van Strien 《Biodiversity and Conservation》2008,17(14):3455-3469
Since the first Butterfly Monitoring Scheme in the UK started in the mid-1970s, butterfly monitoring in Europe has developed
in more than ten European countries. These schemes are aimed to assess regional and national trends in butterfly abundance
per species. We discuss strengths and weaknesses of methods used in these schemes and give examples of applications of the
data. A new development is to establish supra-national trends per species and multispecies indicators. Such indicators enable
to report against the target to halt biodiversity loss by 2010. Our preliminary European Grassland Butterfly Indicator shows
a decline of 50% between 1990 and 2005. We expect to develop a Grassland Butterfly Indicator with an improved coverage across
European countries. We see also good perspectives to develop a supra-national indicator for climate change as well as an indicator
for woodland butterflies. 相似文献
47.
Accounting for weather and time-of-day parameters when analysing count data from monitoring programs
Yves Bas Vincent Devictor Jean-Pierre Moussus Frédéric Jiguet 《Biodiversity and Conservation》2008,17(14):3403-3416
Problems induced by heterogeneity in species and individuals detectability are now well recognized when analysing count data.
Yet, most recent techniques developed to handle this problem are still hardly applicable to many monitoring schemes, and do
not provide abundance estimates at the point count scale. Here, we show how using simple weather variables can be a useful
surrogate to detect variability in species detectability. We further look for a potential bias or loss in statistical power
based on count data while ignoring weather and time-of-day variables. We first used the French Breeding Bird Survey to test
how each of the counts of the 97 most common breeding species was influenced by weather and time-of-day variables. We assessed
how the estimation of each species response to fragmentation could be influenced by correcting counts with such variables.
Among 97 species, 75 were affected by at least one of the five weather and time-of-day variables considered. Despite these
strong influences, the relationship between species abundance and fragmentation was not biased when not controlling counts
for weather and time-of-day variables and further found no improvement in statistical power when accounting for these variables.
Our results show that simple variables can be very powerful to assess how species detectability is influenced by weather conditions
but they are inconsistent with any specific bias due to heterogeneous detectability. We suggest that raw count data can be
used without any correction in case the sources of variation in detectability could be considered independent to the factor
of interest. 相似文献
48.
SYNOPSIS. Rats inoculated with 10,000 sporulated oocysts of Eimeria nieschulzi had significantly higher total leukocyte counts on postinoculation days (PI) 1, 5, 6 and 7 when compared to control rats. Relative and absolute neutrophil counts increased concomitantly with a decrease in the relative lymphocyte levels in E. nieschulzi-infected rats on PI day 7. Absolute and relative neutrophil counts in infected rats on PI days 7 and 8 were closely correlated with the host's total oocyst discharge. The E. nieschulzi infection had no significant effect on the relative or absolute levels of monocytes or eosinophils. The described changes in leukocyte levels were not paralleled by a significant change in the erythrocyte count. 相似文献
49.
The most suitable way for standardizing biovolume based assemblage analysis using the Utermöhl technique for counting combined with biomass conversion has not yet been found even though this method has been successfully used in plankton studies for many years. Due to the complexity of the approach easily applicable steps to initially meet primary standard end point or target counts for intra-laboratory standardization tested here seem promising. Examples from count validation and biometric data from the large datasets of three laboratories are given. The first two examples initially intended to quantify the taxon specific scatter of counts by (A) using identical replica of field samples combined with a half-chamber count (scan of every second transect) and the 30 random field approach, respectively, and (B) the replication of transect counts in one sample. Both examples identified relatively low minimum count thresholds to delimit counting errors for single cell counts. The third example identifies shape variability and allometric relationships of the main axes and shows a way to improve taxon specific biomass estimates with special reference to cell thickness. However improved precision of quantitative phytoplankton analysis requires optimization of combined counting strategy and biovolume assessment methods. 相似文献
50.