原子力显微镜在植物学研究中的应用

原子力显微镜（AFM）是一种探测样品表面信息的有力工具,它可以在空气和接近样品生理条件下成像,同时也可以在皮牛（pico-Newton,10^-12N）至微牛（micro—Newton,10^-6N）水平上测量力的大小。本文主要介绍了自AFM发明以来,其在植物大分子、细胞器、细胞、叶片等方面的应用,并列举了目前AFM存在的几点不足。     

Short-Term Temporal Changes in Tree Live Biomass in a Central Amazonian Forest, Brazil

We monitored seventy-two 1 ha permanent plots spread over 64 km² of terra firme forest at Reserva Ducke (Manaus, Amazonas, Brazil) over 2-yr intervals to assess the effects of a soil and topographic gradient on the rate of change in the aboveground tree live biomass (AGLB). AGLB increased significantly over the 2-yr intervals, exhibiting a mean rate of change of 1.65 Mg/ha/yr (bootstrapped 95% CI: 1.15, 2.79). The rate of change varied according to tree size class; understory and sub-canopy trees exhibited higher rates of change. Over the whole period, the rate of change was not related to soil or topographic features of the plots, but there was evidence that the relationships varied depending on the year of measurement. In the plots monitored between 2001 and 2003 we found a significant relationship between AGLB change and the soil textural gradient, but this relationship was not evident in plots monitored between 2002 and 2004. This suggests that both the temporal variation in the soil–biomass change relationship and the size structure of the forest need to be included in models of biomass change in Amazonia. We also noted that the rate of biomass change is sensitive to the equation used to estimate AGLB. Allometric models that incorporate wood-density data provide higher per plot AGLB estimates, but lower rates of change, suggesting that variations in floristic composition have important implications for carbon cycling in diverse tropical forests.
Abstract in Portuguese is available at http://www.blackwell-synergy.com/loi/btp .     

Higher treefall rates on slopes and waterlogged soils result in lower stand biomass and productivity in a tropical rain forest

1.  Relationships between tropical rain forest biomass and environmental factors have been determined at regional scales, e.g. the Amazon Basin, but the reasons for the high variability in forest biomass at local scales are poorly understood. Interactions between topography, soil properties, tree growth and mortality rates, and treefalls are a likely reason for this variability.
2.  We used repeated measurements of permanent plots in lowland rain forest in French Guiana to evaluate these relationships. The plots sampled topographic gradients from hilltops to slopes to bottomlands, with accompanying variation in soil waterlogging along these gradients. Biomass was calculated for >175 tree species in the plots, along with biomass productivity and recruitment rates. Mortality was determined as standing dead and treefalls.
3.  Treefall rates were twice as high in bottomlands as on hilltops, and tree recruitment rates, radial growth rates and the abundance of light-demanding tree species were also higher.
4.  In the bottomlands, the mean wood density was 10% lower than on hilltops, the basal area 29% lower and the height:diameter ratio of trees was lower, collectively resulting in a total woody biomass that was 43% lower in bottomlands than on hilltops.
5.  Biomass productivity was 9% lower in bottomlands than on hilltops, even though soil Olsen P concentrations were higher in bottomlands.
6.   Synthesis . Along a topographic gradient from hilltops to bottomlands there were higher rates of treefall, which decreased the stand basal area and favoured lower allocation to height growth and recruitment of light-demanding species with low wood density. The resultant large variation in tree biomass along the gradient shows the importance of determining site characteristics and including these characteristics when scaling up biomass estimates from stand to local or regional scales.     

普定喀斯特次生林木本植物叶生活型比例和谱系多样性的驱动因素

为探讨喀斯特森林落叶阔叶植物(DBL)与常绿阔叶植物(EBL)比例和生物多样性差异及其驱动因素，该研究以贵州省普定县43个喀斯特次生林样地作为研究对象，采用广义线性回归模型、模型选择和Mantel检验的多元回归方法，分析地理距离、环境(包括地形和基岩类型)和人类活动等因素对样地内落叶阔叶植物和常绿阔叶植物所占比例以及谱系多样性的影响。结果表明：(1)普定喀斯特次生林样地内落叶阔叶植物与常绿阔叶植物虽在物种丰富度和个体多度上总体相当，但样地间差异较大；样地落叶与常绿阔叶植物谱系alpha多样性(即SES.MPD)无明显差异，但落叶阔叶植物谱系beta多样性(即SES.betaMPD)明显小于常绿阔叶植物。(2)落叶阔叶植物丰富度占比和相对多度随基岩类型改变而变化，均表现为泥灰岩森林高于石灰岩森林，而落叶阔叶植物丰富度占比随人类活动增强而上升。(3)样地落叶阔叶植物谱系alpha多样性随人类活动增强而升高，而常绿阔叶植物谱系alpha多样性受环境和人类活动等因素的作用不明显；落叶阔叶植物和常绿阔叶植物谱系beta多样性受不同因素调节，前者随基岩类型和人类活动等因素变化而升高，后者则随地理距...     

Evolution of biological dispersal corridors through a tectonically active mountain range in New Zealand

Aim To assess the geological evolution and biogeographical implications of low mountain passes. In particular, we question the common biogeographical belief that major mountain belts form impervious physical barriers to biological dispersal, and that related taxa found on opposites sides of mountains are necessarily a result of vicariant tectonic processes. Location The Southern Alps of New Zealand form a long (500 km) narrow mountain belt at the oblique collisional Pacific–Australian tectonic plate boundary. High mountains were uplifted during the Pliocene (2–5 Ma) and uplift has continued to the present day. Methods We integrate previous work from several disciplines to obtain an overview of inter‐relationships between plate tectonic processes, geomorphology and biogeography along the main mountain barrier in New Zealand, and then extend this approach to other major mountain belts. Results The Southern Alps initially formed a barrier to at least some biological dispersal, including vicariant formation of separate species of freshwater non‐migratory galaxiid fish on either side. However, the high mountain barrier was breached in several places when passive transport of topography occurred, from the low‐erosion rain shadow on the eastern side towards the high‐erosion, high‐rainfall western side. This tectonic transport resulted in the capture of eastern rivers by west‐draining rivers, leaving low passes at the topographic divide. These low‐elevation corridors permitted biological dispersal across the mountains, although continued uplift raises these passes. A new set of passes has formed in the northern part of the mountains where younger faults are cutting across the older mountain topography. These potential dispersal corridors are becoming lower with continued erosion, and more common as the defining structures migrate southwards. Main conclusions Biological dispersal across the Southern Alps may be facilitated by numerous mountain passes, especially via the new passes formed by cross‐cutting faults. More low‐lying corridors existed than is readily apparent now, as old river capture‐related passes have been blocked by ongoing uplift. The dynamic mountain‐building and erosional environment typified by the Southern Alps occurs in all the world’s collisional mountain belts, such as the Andes, Himalayas, European Alps and North American Cordillera. Sister taxa occurring across mountain belts are not necessarily a result of vicariance driven by the rise of the mountains, as numerous passes may have permitted intermittent dispersal. The evolution of low passes may have been more prevalent than is currently appreciated, suggesting that topographically complex mountain ranges might be more effectively viewed as dynamic filters within a probability landscape rather than as static and impervious high‐altitude barriers to all but the rarest of biological dispersal events. In some cases, the biological disjunctions observed across mountains may more directly reflect habitat differentiation driven by orographic mountain development that has limited the probability of trans‐alpine dispersal success.     

Post-glacial migration of silver fir (Abies alba Mill.) in the south-western Alps

Aim  Previous studies have failed to reconstruct the regional post-glacial migration pattern of Abies alba in southern France. Based on the first exhaustive compilation of palaeoecological data in this region, we present the state-of-the-art and attempt to synthesize the available information concerning glacial refugia and post-glacial migration, and analyse the information with regard to climate and orography.
Location  South-western Alps and adjacent areas, southern France.
Methods  The work compiles the available palaeoecological data in the south-western Alps (52 sites, 290 radiocarbon dates). The post-glacial migration pattern of Abies alba is reconstructed based on 22 selected palynological analyses (11 well-dated reference sites and 11 supplementary ones).
Results  The geographical patterns of approaching area limit, immigration and expansion are reconstructed at the scale of the southern French Alps.
Main conclusions  Despite previous assertions, the evidence of refugia in southern France is non-existent. The late-glacial records of fir pollen, previously interpreted in French Mediterranean regions and on adjacent foot-hills as possibly reflecting regional refugia, most probably correspond to reworking phenomena or long-distance pollen transport. Fir migration, originating in the Apennine refugia and through the south-western extremity of the Alps, was extremely rapid in the southern French Alps, only spanning a few centuries between 10,100 and 9800 cal. yr bp . The subsequent spread of fir populations was controlled by local parameters, such as the aridity of the inner valleys, which resulted in a delayed expansion in comparison to other regions. Abies almost disappeared from the south-western Alps during the Roman era, around 2000 cal. yr bp .     

Influence of micro-landforms on forest structure,tree death and recruitment in a Japanese temperate mixed forest

The micro-landform unit system offers an effective way of analyzing vegetation–geomorphology relationships at a 10-m scale in areas such as the hilly regions of Japan. We analyzed relationships between micro-landforms and tree population parameters over a 9-year interval to elucidate the influence of geomorphic processes on vegetation dynamics. A 2.16-ha permanent plot was established in a temperate mixed forest. Each 5m×5m quadrat within this plot was classified according to six types of micro-landform units: (i) crest slope (CS); (ii) upper sideslope (US); (iii) head hollow (HH); (iv) lower sideslope (LS); (v) foot slope (FS); and (vi) river bed (RB). All living trees larger than 10cm in diameter at breast height (d.b.h.) were identified, mapped and marked in 1989 and resurveyed in 1998. Almost all of the 23 common tree species persisted in their own core habitats (i.e. the micro-landforms) between the two surveys. The species distribution in both surveys showed that the six micro-landforms could be combined into two larger groups: upper and lower hillslope areas. The upper hillslope area had higher tree densities and larger basal areas than the lower hillslope area. It is possible that these differences result from the longer lifespans of trees on the upper hillslope area rather than from differences in mortality and recruitment rates. In addition, the different ways in which trees die in the different micro-landform units may affect the regeneration process in hilly regions through different gap formation. The effects of different geomorphic processes are reflected in the lifespans of the trees and may result in different forest structure and dynamics among micro-landform units.     

Spatial distribution of canopy and subcanopy species along a sloping topography in a cool-temperate conifer-hardwood forest in the snowy region of Japan

The spatial distributions of canopy and subcanopy species (50cm stem length) were investigated within a plot extending from the top of a ridge to the valley bottom in a cool-temperate old-growth mixed forest, dominated by Cryptomeria japonica and Fagus crenata, in the snowy region of Japan. Based on the longitudinal profile of the slope, the study slope was divided into the relatively gentle upper slope position (US), the steep lower slope position (LS), the flat valley bottom (VB) and the boundary zone between the upper and lower slopes (BS). Spatial dispersal and the association patterns of species were analyzed in upperstory (10cm d.b.h) and understory (<10cm d.b.h) layers. Dominant species in the upperstory layer abruptly changed from Cryptomeria to Fagus at the BS site. In contrast, the understory trees of many species, including shade-intolerant and evergreen species, were independent of the location of conspecific upperstory trees or canopy gaps and extended their distributions on and around the BS site. Significant, diverse canopy and subcanopy species occurred at this site in both upperstory and understory layers. On the BS site, which is the lower margin of Cryptomeria-dominated vegetation, there were many medium-sized C.japonica that were killed by uprooting or breaking of the stems as a result of heavy snow pressure. It is suggested that the snow pressure gradient along a slope has a strong influence on community structure and the maintenance of diverse canopy and subcanopy species in this snowy mixed forest.     

The mitochondrial tricarboxylate carrier of silver eel: dimeric structure and cytosolic exposure of both N- and C-termini

The mitochondrial tricarboxylate carrier plays a fundamental role in the hepatic fatty acid synthesis. In this study, we investigated the transmembrane organization of this protein in the inner membrane of eel liver mitochondria using anti–N-terminal and anti–C-terminal antibodies. These antibodies recognized the N- and C-termini of the tricarboxylate carrier in intact mitoplasts, thus suggesting a cytosolic exposure of these regions in the membrane-bound protein. This structural arrangement of the tricarboxylate carrier was further confirmed by protease treatment of intact mitoplasts. Moreover, the oligomeric state of the native tricarboxylate carrier was investigated by blue native electrophoresis. A dimeric form of the carrier protein was found when eel liver mitochondria were solubilized with the mild detergent digitonin. These findings suggest an arrangement of the dimeric tricarboxylate carrier into an even number of membrane-spanning domains, with the N-terminal and C-terminal regions oriented toward the intermembrane space of fish mitochondria.     

Determination of the topography and biometry of chlorosomes by atomic force microscopy

Isolated chlorosomes of several species of filamentous anoxygenic phototrophic bacteria (FAPB) and green sulfur bacteria (GSB) were examined by atomic force microscopy (AFM) to characterize their topography and biometry. Chlorosomes of Chloroflexus aurantiacus, Chloronema sp., and Chlorobium (Chl.) tepidum exhibited a smooth surface, whereas those of Chl. phaeobacteroides and Chl. vibrioforme showed a rough one. The potential artifactual nature of the two types of surfaces, which may have arisen because of sample manipulation or AFM processing, was ruled out when AFM images and transmission electron micrographs were compared. The difference in surface texture might be associated with the specific lipid and polypeptide composition of the chlorosomal envelope. The study of three-dimensional AFM images also provides information about the size and shape of individual chlorosomes. Chlorosomal volumes ranged from ca. 35000 nm³ to 247000 nm³ for Chl. vibrioforme and Chl. phaeobacteroides, respectively. The mean height was about 25 nm for all the species studied, except Chl. vibrioforme, which showed a height of only 14 nm, suggesting that GSB have 1–2 layers of bacteriochlorophyll (BChl) rods and GFB have 4. Moreover, the average number of BChl molecules per chlorosome was estimated according to models of BChl rod organisation. These calculations yielded upper limits ranging from 34000 BChl molecules in Chl. vibrioforme to 240000 in Chl. phaeobacteroides, values that greatly surpass those conventionally accepted.This revised version was published online in October 2005 with corrections to the Cover Date.