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31.
Two aspects of the evolution of aminoacyl-tRNA synthetases are discussed. Firstly, using recent crystal structure information on seryl-tRNA synthetase and its substrate complexes, the coevolution of the mode of recognition between seryl-tRNA synthetase and tRNAser in different organisms is reviewed. Secondly, using sequence alignments and phylogenetic trees, the early evolution of class 2 Amnoacyl-tRNA synthetases is traced. Arguments are presented to suggest that synthetases are not the oldest of protein enzymes, but survived as RNA enzymes during the early period of the evolution of protein catalysts. In this view, the relatedness of the current synthetases, as evidenced by the division into two classes with their associated subclasses, reflects the replacement of RNA synthetases by protein synthetases. This process would have been triggered by the acquisition of tRNA 3 end charging activity by early proteins capable of activating small molecules (e.g., amino acids) with ATP. If these arguments are correct, the genetic code was essentially frozen before the protein synthetases that we know today came into existence.
Correspondence to: S. CusackBased on a presentation made at a workshop-Aminoacyl-tRNA Synthetases and the Evolution of the Genetic Code-held at Berkeley, CA, July 17–20, 1994 相似文献
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Two tRNA sequences from Methanobacterium thermoautotrophium are reported. Both tRNAGlyGCC and tRNANUUAsn, the first tRNA sequences from methanogens, were determined by partial hydrolyses (both chemical and enzymatic) and analyzed by gel electrophoresis. The two tRNAs contain the unusual T-loop modifications, Cm and m1I, which are present in other archaebacterial tRNAs. Finally the presence of an unknown modification in the D-loop has been inferred by a large jump in the sequence ladder. These tRNAs are approximately equidistant from eubacterial or eukaryotic tRNAs. 相似文献
34.
Richard B. Hallick Margaret J. Hollingsworth Jac A. Nickoloff 《Plant molecular biology》1984,3(3):169-175
Summary Transfer RNA genes have been mapped to at least nine different loci on the physical map of the Euglena gracilis chloroplast genome. One of these loci in the ribosomal RNA operons is present three times per genome. The DNA sequences of six of the nine different loci, containing 21 different tRNA genes, have been determined. Genes corresponding to the amino acids Ala, Arg, Asn, Cys, Gln, Gly (2), Glu, His, Ile, Leu (2), Met (2), Phe, Ser, Thr, Trp, Tyr, Val, and one unassigned species have been identified. All genes except one are found in clusters of 2–6 genes. None of the known genes contains introns, nor codes for the 3-CCA terminus. In addition to these genes, two pseudo tRNA genes are present in the rDNA leader region. 相似文献
35.
Bergmann Pascale Seyer Patrick Burkard Gérard Weil Jacques-Henri 《Plant molecular biology》1984,3(1):29-36
Tobacco chloroplast tRNAs have been purified by two-dimensional polyacrylamide gel electrophoresis, identified by aminoacylation, labelled at their 3-end and hybridized to tobacco chloroplast DNA restriction fragments, in order to establish a tRNA gene map. These hybridization studies have revealed the localization of at least seven genes in each inverted repeat region, a minimum of 22 tRNA genes in the large single copy region and one tRNA gene in the small single copy region. Comparison of the tobacco chloroplast tRNA gene map to that of maize shows many similarities, but also some differences suggesting that DNA sequence rearrangements have occurred in the chloroplast genome during evolution. 相似文献
36.
Synopsis Results of experimental transfer of rainbow smelt into lakes reclaimed by rotenone around 1960 in Maine were originally interpreted to cast doubt on the previously widely accepted hypothesis that there were two hereditarily different forms of rainbow smelt, one large and one small. Study of more recent data from some of the transplanted populations and reanalysis of the original data suggests different conclusions. The initial effect of introductions into a reclaimed lake may be accelerated and/or more prolonged growth which exceeds even interlake differences. This initial phase, however, is followed by a second phase, when the population reaches equilibrium and these effects subside. Data from phase two of the Little Concord-Shagg and Cold Stream-Coleback Lake transfers showed that the growth characteristics of the transplanted populations returned to those of the parental populations. Large differences in growth patterns were thus found only in the initial phase of the introduction. Meristic characters were little affected by transplanting.Analysis of large specimens derived from a postulated second unofficial introduction into Coleback Lake showed that they also differed significantly, having both higher gill raker and vertebral counts than the smaller smelt. This was of interest as smelt vertebral and gill raker counts usually are inversely related; hence we do not equate these for the moment with the large form of smelt known elsewhere.It is concluded that the initial interpretation of transfer experiments be delayed until conditions approaching equilibrium can be expected to exist. Further, our analysis of more recent lake transfer data has shown nothing to refute the hypothesis that there are at least two hereditarily different forms of smelt. 相似文献
37.
Summary Sequence data from methionine initiator and phenylalanine transfer RNAs were used to construct phylogenetic trees by the maximum parsimony method. Although eukaryotes, prokaryotes and chloroplasts appear related to a common ancestor, no firm conclusion can be drawn at this time about mitochondrial-coded transfer RNAs. tRNA evolution is not appropriately described by random hit models, since the various regions of the molecule differ sharply in their mutational fixation rates. Hot mutational spots are identified in the TC, the amino acceptor and the upper anticodon stems; the D arm and the loop areas on the other hand are highly conserved. Crucial tertiary interactions are thus essentially preserved while most of the double helical domain undergoes base pair interchange. Transitions are about half as costly as transversions, suggesting that base pair interchanges proceed mostly through G-U and A -C intermediates. There is a preponderance of replacements starting from G and C but this bias appears to follow the high G + C content of the easily mutated base paired regions. 相似文献
38.
39.
Ching-San Chen Tuan-Nan Wen Hsiao-Mei Tuan 《Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression》1982,699(2):92-97
It has been previously shown that Clostridium sticklandii specifically synthesized three readily separable 75Se-labeled tRNAs, designated seleno-tRNAs I, II and III, and the partially purified seleno-tRNA II cochromatographed with l-prolyl-tRNA on DEAE-Sephadex A-50 (Chen, C.S. and Stadtman, T.C. (1980) Proc. Natl. Acad. Sci. U.S.A. 77, 1403–1407). In the present study a highly purified 75Se-labeled tRNA I was obtained by chromatography on benzoylated DEAE-cellulose, DEAE-Sephadex A-50 and Sepharose 4B. The 75Se-labeled tRNA I cochromatographed with an l-valine-accepting species on DEAE-Sephadex A-50 and Sepharose 4B. Addition of a 285-fold molar excess of unlabeled l-valine to the l-valine acceptor activity assay mixture markedly decreased the amount of l-[14C]valine bound to seleno-tRNA I. 相似文献
40.
Elongation factor EF-Tu from Escherichia coli was labelled with N-[14C]tosyl-L-phenylalanylchloromethane, digested with trypsin and the peptides obtained separated by HPLC. The only radioactive peak recovered corresponded to tryptic peptide containing residues 75–98. Sequencing of the peptide by automated Edman degradation identified cysteine 81 as the site of N-tosyl-L-phenylalanylchloromethane modification. These results confirm the importance of this residue for the interaction with aminoacyl-tRNAs. 相似文献