Infective behaviour and aphid-transmissibility of Italian isolates of potato virus Y in tobacco and peppers

When mechanically inoculated to susceptible tobacco (Nicotiana tabacum L.) cultivars, nine isolates of PVY from Umbria (Central Italy) and two from Southern Latium gave rise to rapid systemic infection which developed within 6–8 days after inoculation. Systemic spread of the same isolates was slower, or much slower, in infected pepper (Capsicum annuum L.) cultivars, 8–14 days for Southern Latium isolates and 20 - 35 days for Umbrian ones. Aphid (Myzus persicae)-moculation of pepper and tobacco plants with two of the Umbrian and one of the Southern Latium isolates confirmed the results from sap-transmission and showed that fewer inoculated pepper plants become infected, especially with Umbrian isolates. In agreement with the data on systemic spread, aphid-acquisition trials indicated that tobacco plants became efficient PVY sources for vectors 6–8 days after inoculation with either group of isolates. Peppers became efficient acquisition hosts 8–15 days after inoculation with Southern Latium isolates but not until 22–45 days after inoculation with Umbrian ones. Southern Latium isolates induced more severe symptoms in pepper cultivars than Umbrian isolates did. One of the Southern Latium isolates was able to systemically infect the resistant pepper cv. Yolo Y, which was never infected by the Umbrian isolates. The Umbrian isolates tested seem to be better adapted to tobacco than peppers, while Southern Latium ones are well adapted to both.     

Tales from the underground: molecular

Colonization of the rhizosphere by micro‐organisms results in modifications in plant growth and development. This review examines the mechanisms involved in growth promotion by plant growth‐promoting rhizobacteria which are divided into indirect and direct effects. Direct effects include enhanced provision of nutrients and the production of phytohormones. Indirect effects involve aspects of biological control: the production of antibiotics and iron‐chelating siderophores and the induction of plant resistance mechanisms. The study of the molecular basis of growth promotion demonstrated the important role of bacterial traits (motility, adhesion and growth rate) for colonization. New research areas emerge from the discovery that molecular signalling occurs through plant perception of eubacterial flagellins. Recent perspectives in the molecular genetics of cross‐talking mechanisms governing plant–rhizobacteria interactions are also discussed.     

Climate and land use changes will degrade the configuration of the landscape for titi monkeys in eastern Brazil

Land use changes have profound effects on populations of Neotropical primates, and ongoing climate change is expected to aggravate this scenario. The titi monkeys from eastern Brazil (Callicebus personatus group) have been particularly affected by this process, with four of the five species now allocated to threatened conservation status categories. Here, we estimate the changes in the distribution of these titi monkeys caused by changes in both climate and land use. We also use demographic‐based, functional landscape metrics to assess the magnitude of the change in landscape conditions for the distribution predicted for each species. We built species distribution models (SDMs) based on maximum entropy for current and future conditions (2070), allowing for different global circulation models and contrasting scenarios of glasshouse gas concentrations. We refined the SDMs using a high‐resolution map of habitat remnants. We then calculated habitat availability and connectivity based on home‐range size and the dispersal limitations of the individual, in the context of a predicted loss of 10% of forest cover in the future. The landscape configuration is predicted to be degraded for all species, regardless of the climatic settings. This include reductions in the total cover of forest remnants, patch size and functional connectivity. As the landscape configuration should deteriorate severely in the future for all species, the prevention of further loss of populations will only be achieved through habitat restoration and reconnection to counteract the negative effects for these and several other co‐occurring species.     

Solar radiation and functional traits explain the decline of forest primary productivity along a tropical elevation gradient

One of the major challenges in ecology is to understand how ecosystems respond to changes in environmental conditions, and how taxonomic and functional diversity mediate these changes. In this study, we use a trait‐spectra and individual‐based model, to analyse variation in forest primary productivity along a 3.3 km elevation gradient in the Amazon‐Andes. The model accurately predicted the magnitude and trends in forest productivity with elevation, with solar radiation and plant functional traits (leaf dry mass per area, leaf nitrogen and phosphorus concentration, and wood density) collectively accounting for productivity variation. Remarkably, explicit representation of temperature variation with elevation was not required to achieve accurate predictions of forest productivity, as trait variation driven by species turnover appears to capture the effect of temperature. Our semi‐mechanistic model suggests that spatial variation in traits can potentially be used to estimate spatial variation in productivity at the landscape scale.     

Modelling the Human Immune System by Combining Bioinformatics and Systems Biology Approaches

Over the past decade a number of bioinformatics tools have been developed that use genomic sequences as input to predict to which parts of a microbe the immune system will react, the so-called epitopes. Many predicted epitopes have later been verified experimentally, demonstrating the usefulness of such predictions. At the same time, simulation models have been developed that describe the dynamics of different immune cell populations and their interactions with microbes. These models have been used to explain experimental findings where timing is of importance, such as the time between administration of a vaccine and infection with the microbe that the vaccine is intended to protect against. In this paper, we outline a framework for integration of these two approaches. As an example, we develop a model in which HIV dynamics are correlated with genomics data. For the first time, the fitness of wild type and mutated virus are assessed by means of a sequence-dependent scoring matrix, derived from a BLOSUM matrix, that links protein sequences to growth rates of the virus in the mathematical model. A combined bioinformatics and systems biology approach can lead to a better understanding of immune system-related diseases where both timing and genomic information are of importance.     

利用cDNA-RDA技术研究BXSB狼疮小鼠差异表达的基因

利用近年来发展起来的代表性差异分析cDNA-RDA(cDNA-representational difference analysis)技术筛选BXSB红斑狼疮小鼠发病相关基因.发现了3个新的表达序列标签(EST)片段,在GenBank中的登录号分别为AF060113, AF060111, AF060110,同时发现了一些已知与自身免疫病相关的基因如逆转录病毒衣壳蛋白、Line-1逆转录酶等.通过RDA技术可能发现系统性红斑狼疮发病相关新基因,为自身免疫病的理论研究提供新的思路和方法.     

Complex structural effects of two hemispheric climatic oscillators on the regional spatio-temporal expansion of a threatened bird

Links between climatic conditions in the eastern equatorial Pacific and extratropical ecological processes remain unexplored. The analysis of a 20‐year time series of spatial and numeric dynamics of a threatened Mediterranean bird suggests, however, that such couplings can be remarkably complex. By providing a new ecological time‐series modelling approach, we were able to dissect the joint effects of the El Niño/Southern Oscillation (ENSO), the North Atlantic Oscillation (NAO), regional weather, population density and stochastic variability on the expansion dynamics of the White‐headed duck (Oxyura leococephala) in Spain. Our results suggest that the spatial and numeric dynamics of ducks between peak brood emergence and wintering were simultaneously affected by different climatic phenomena during different phases of their global cycles, involving time lags in the numeric dynamics. Strikingly, our results point to both the NAO and the ENSO as potentially major factors simultaneously forcing ecological processes in the Northern Hemisphere, and suggest a new pathway for non‐additive effects of climate in ecology.     

Persistence of Water within Perched Basins of the Peace-Athabasca Delta, Northern Canada

The Peace-Athabasca Delta (PAD) is one of the world’s largest freshwater deltas. Many of its shallow (<1.5 m) lakes and wetlands are perched above surrounding waterways. The delta has experienced a number of wetting and drying intervals. The latest drying trend ended in 1996 when high waters, generated under ice-jam and open-water conditions, recharged a number of the perched basins. The objective of this study was to determine the relative importance of hydroclimatic components on the persistence of water. A water-balance model was developed to simulate water-level responses following a flood event. Basin response was tested against a range of historical hydroclimatic conditions that have occurred in the delta during the 20th century. Ponded water duration in a 0.8 m deep perched basin was 5 years for the cool-dry period of the 1920s, slightly longer for the post-1974 flood era, and up to 9 years for the wet conditions of the 1940s and 1950s. Water drawdown occurred in almost every year and was almost exclusively due to evaporation exceeding precipitation. Net groundwater flux was minimal. Given the overlying importance of the floodwater component in the water balance of perched basins, the next step is to investigate the causes, spatial sources and frequency of flooding. This water balance model presented in this paper offers a useful tool for the management of the duration of water in perched wetlands of the PAD, which can help preserve essential habitat for wildlife.     

不同稻作方式对稻田杂草群落的影响

运用半试验与调查相结合的方法,以贵州省从江县传统农业区的糯稻和杂交稻为例,研究了在水稻单作（R）、稻-鱼（R-F）和稻-鱼-鸭（R-F-D）3种不同稻作方式下稻田杂草群落的特征.结果表明：糯稻在3种稻作方式下的抑制杂草能力均优于杂交稻;R-F-D显著降低了田间杂草的发生密度,对鸭舌草、节节菜等的抑制效果达到100%,总体抑制杂草效果显著优于其他稻作方式,杂草的物种丰富度及Shannon多样性指数显著降低,Pielou均匀度指数提高,表明群落物种组成发生了很大的改变,降低了原来优势杂草的发生, 是一种较好的可达到抑制杂草效果的稻作方式.