Antimicrobial activity of the indolicidin‐derived novel synthetic peptide In‐58

Natural peptides with antimicrobial activity are extremely diverse, and peptide synthesis technologies make it possible to significantly improve their properties for specific tasks. Here, we investigate the biological properties of the natural peptide indolicidin and the indolicidin‐derived novel synthetic peptide In‐58. In‐58 was generated by replacing all tryptophan residues on phenylalanine in D‐configuration; the α‐amino group in the main chain also was modified by unsaturated fatty acid. Compared with indolicidin, In‐58 is more bactericidal, more resistant to proteinase K, and less toxic to mammalian cells. Using molecular physics approaches, we characterized the action of In‐58 on bacterial cells at the cellular level. Also, we have found that studied peptides damage bacterial membranes. Using the Escherichia coli luminescent biosensor strain MG1655 (pcolD’::lux), we investigated the action of indolicidin and In‐58 at the subcellular level. At subinhibitory concentrations, indolicidin and In‐58 induced an SOS response. Our data suggest that indolicidin damages the DNA, but bacterial membrane perturbation is its principal mode of action. Copyright © 2017 European Peptide Society and John Wiley & Sons, Ltd.     

Molecular modelling,synthesis and biological evaluation of peptide inhibitors as anti-angiogenic agent targeting neuropilin-1 for anticancer application

Vascular endothelial growth factor (VEGF) and its co-receptor neuropilin-1 (NRP-1) are important targets of many pro-angiogenic factors. In this study, nine peptides were synthesized and evaluated for their molecular interaction with NRP-1 and compared to our previous peptide ATWLPPR. Docking study showed that the investigated peptides shared the same binding region as shown by tuftsin known to bind selectively to NRP-1. Four pentapeptides (DKPPR, DKPRR, TKPPR and TKPRR) and a hexapeptide CDKPRR demonstrated good inhibitory activity against NRP-1. In contrast, peptides having arginine residue at sites other than the C-terminus exhibited low activity towards NRP-1 and this is confirmed by their inability to displace the VEGF₁₆₅ binding to NRP-1. Docking study also revealed that replacement of carboxyl to amide group at the C-terminal arginine of the peptide did not affect significantly the binding interaction to NRP-1. However, the molecular affinity study showed that these peptides have marked reduction in the activity against NRP-1. Pentapeptides having C-terminal arginine showed strong interaction and good inhibitory activity with NRP thus may be a good template for anti-angiogenic targeting agent.     

合成生物学在基础生命科学研究中的应用

合成生物学作为一门新兴的交叉学科,吸引了来自生物学、数理科学和工程学等不同学科的研究人员以及产业界的广泛关注和参与。它旨在通过从头创造全新的或改造已有的生物系统,实现天然生物系统不具备的功能与特性。合成生物学研究不仅具有广阔的生物产业应用前景,更为基础科研提供了全新的手段和思路。本文着眼于合成生物学―建物致知‖的理念,跟踪合成生物学研究在回答生命科学基础问题方面取得的相关成果,简述了其在细胞内分子调控网络、细胞生理学、多细胞群体形态与行为以及多物种微生态学等研究中的应用。     

基于信号网络的功能细胞设计

细胞信号网络是细胞应对环境变化、调控细胞功能以及决定细胞命运的中央处理器。运用合成生物学方法,人工设计细胞信号网络对于"细胞机器"的构建具有重要作用。信号网络通过编码定量的动力学信号,能够在多个维度对细胞工程中的多个子功能单元进行调控。本文介绍了天然信号网络的动力学功能的研究进展,阐述了基于信号网络的功能蛋白质设计的合成生物学相关的方法和思路,并展望了信号网络在下一代合成生物学中的战略意义。     

Induction of Antimeningitis Immunity by Synthetic Peptides: III. Immunoactive Synthetic Fragments of the NspA Protein from Neisseria meningitidis

Four potentially immunoactive peptide fragments of the NspA protein from the outer membrane of the Neisseria meningitidis bacterium were synthesized in order to create a synthetic vaccine against meningococcal infection by the serogroup B bacterium. Mice of various lines were immunized with free peptides nonconjugated with a protein carrier. All the synthetic peptides were shown to induce the production of the antipeptide antibodies in mice. A peptide capable of inducing a decrease in the number of bacteria in blood and the protection of infected animals from death was found in the experiments on the protection of the animals infected with two strains of the Neisseria meningitidis serogroup B.     

Use of [Cit312,314] filaggrin (306–324) analogue for the diagnosis of rheumatoid arthritis. Conformational study by circular dichroism and fourier transformed infrared spectroscopy

Summary Antifilaggrin autoantibodies (AFA) have described to be the most specific markers of rheumatoid arthritis (RA) and epitopes containing citrulline within the sequence of filaggrin identified as major antigenic sites recognised by AFA. In this paper we confirm that citrulline is an essential constituent of filaggrin related antigenic determinants recognised by RA specific autoantibodies, thus having an important role for the development of filaggrin peptides based serological tests. Moreover, we describe our findings on the comparative conformational analysis of filaggrin (306–324) peptide sequence and an analogue in which two arginines were simultaneously substituted by citrulline carried out by Circular Dichroism (CD) and Fourier-Transform Infrared Spectroscopy (FTIR). Results might contribute to the understanding of the structural features that may be important to explain the enhanced binding characteristics of citrullinated peptides to the autoantibodies in rheumatoid arthritis.     

Ovipositional Rhythmicity in Ladybirds (Coleoptera: Coccinellidae): A Laboratory Study

Complete and diel ovipositional rhythms have been observed in three aphidophagous ladybirds (Coleoptera: Coccinellidae): Coccinella septempunctata Linnaeus, Coccinella transversalis Fabricius and Propylea dissecta (Mulsant) for the first time. The complete ovipositional rhythm could be described in terms of a polynomial curve and daily fluctuations in all three species. In the diel cycle, all three ladybird species oviposited significantly in the scotophase. C. septempunctata females preferred to oviposit at the end of scotophase in the early morning hours (0300-0700), P. dissecta laid most eggs in the middle of scotophase during the night (2100-2300), and C. transversalis laid most at the beginning of the scotophase at dusk (1700-1900). While the diel ovipositional rhythm of C. septempunctata and P. dissecta did not differ between days, that of C. transversalis changed dramatically; there was a single peak on the first and second day of observation, and four oviposition peaks on the fifth day with the peaks being situated in the two hours preceding and succeeding the onset and end of the scotophase. Diel rhythms of C. septempunctata and P. dissecta appear to be endogenous in nature while that of C. transversalis is partly modified by exogenous factors.     

Chromosome instability and tumor lethality suppression in carcinogenesis

The maintenance and survival of each organism depends on its genome integrity. Alterations of essential genes, or aberrant chromosome number and structure lead to cell death. Paradoxically, cancer cells, especially in solid tumors, contain somatic gene mutations and are chromosome instability (CIN), suggesting a mechanism that cancer cells have acquired to suppress the lethal mutations and/or CIN. Herein we will discuss a tumor lethality suppression concept based on the studies of yeast genetic interactions and transgenic mice. During the early stages of the multistep process of tumorigenesis, incipient cancer cells probably have adopted genetic and epigenetic alterations to tolerate the lethal mutations of other genes that ensue, and to a larger extent CIN. In turn, CIN mediated massive gain and loss of genes provides a wider buffer for further genetic reshuffling, resulting in cancer cell heterogeneity, drug resistance and evasion of oncogene addiction, thus CIN may be both the effector and inducer of tumorigenesis. Accordingly, interfering with tumor lethality suppression could lead to cancer cell death or growth defects. Further validation of the tumor lethality suppression concept would help to elucidate the role of CIN in tumorigenesis, the relationship between CIN and somatic gene mutations, and would impact the design of anticancer drug development.     

噪声诱导多细胞系统的同步切换

在以往的工作中讨论了对单细胞的基因开关系统噪声如何诱导连贯切换．在此,对多细胞的基因开关网络系统研究各种噪声（包括细胞内噪声和细胞环境噪声）对同步切换的影响．发现：细胞内基因调控过程中的合成率和降解率的随机涨落以及细胞内的附加噪声均能够诱导群体基因开关系统的同步切换,而且存在一个最优的噪声强度,它使得这种同步切换的效果最佳．另一方面,细胞环境的随机涨落所导致的噪声（即环境噪声）,不但能诱导上述同步切换,而且当细胞内噪声不足以诱导细胞群体的同步切换时,它通过压制内部噪声来达到增强群体系统的协作行为．最后,还分析了受噪声影响的信号分子的扩散率对细胞群体切换行为的影响．