Spatially explicit models of divergence and genome hitchhiking

Strong barriers to genetic exchange can exist at divergently selected loci, whereas alleles at neutral loci flow more readily between populations, thus impeding divergence and speciation in the face of gene flow. However, ‘divergence hitchhiking’ theory posits that divergent selection can generate large regions of differentiation around selected loci. ‘Genome hitchhiking’ theory suggests that selection can also cause reductions in average genome‐wide rates of gene flow, resulting in widespread genomic divergence (rather than divergence only around specific selected loci). Spatial heterogeneity is ubiquitous in nature, yet previous models of genetic barriers to gene flow have explored limited combinations of spatial and selective scenarios. Using simulations of secondary contact of populations, we explore barriers to gene flow in various selective and spatial contexts in continuous, two‐dimensional, spatially explicit environments. In general, the effects of hitchhiking are strongest in environments with regular spatial patterning of starkly divergent habitat types. When divergent selection is very strong, the absence of intermediate habitat types increases the effects of hitchhiking. However, when selection is moderate or weak, regular (vs. random) spatial arrangement of habitat types becomes more important than the presence of intermediate habitats per se. We also document counterintuitive processes arising from the stochastic interplay between selection, gene flow and drift. Our results indicate that generalization of results from two‐deme models requires caution and increase understanding of the genomic and geographic basis of population divergence.     

Linking woodland key habitat inventory and forest inventory data to prioritize districts needing conservation efforts

Woodland key habitat (WKH) inventories have been conducted in northern European countries, with the aim to create networks of minimally disturbed forest stands for protection. The goal of national forest inventory is to provide information relevant to forest management, such as on forest types, trees species composition, age structure and wood volume. The aim of this study was to link these two inventory databases to identify districts of Latvia most deficient in connectivity and habitat quality, in order to prioritize districts needing conservation effort. As an example, the area of deciduous forest with nemoral tree species (oak, ash, lime, maple and elm) and aspen was chosen. These forests provide habitat for a specific community of epiphytes. Using information in the WKH database, habitat quality in different districts of Latvia was estimated by the frequencies of occurrence of structural elements and selected indicator epiphyte species in nemoral tree species and aspen WKHs. Using digital data in the national forest inventory database, fragmentation metrics were determined for forests that, according to age and tree species composition, could potentially be nemoral tree and aspen WKHs. On a regional level, the lowest habitat quality in WKH occurred in districts that had the least fragmentation of potential WKH forest. In the less fragmented areas, the habitat quality of the existing WKH will likely increase in the future, and could be promoted by management to create structural elements typical of natural forests. The districts with the most fragmented nemoral and aspen forests, contained WKHs with the best habitat quality. A focus on protection should be given to these stands as they are the most likely to support source populations, and there is a need to improve spatial continuity of suitable tree substrate in these areas.     

Enhancing autonomy in paid surrogacy

The gestational surrogate – and her economic and educational vulnerability in particular – is the focus of many of the most persistent worries about paid surrogacy. Those who employ her, and those who broker and organize her services, usually have an advantage over her in resources and information. That asymmetry exposes her to the possibility of exploitation and abuse. Accordingly, some argue for banning paid surrogacy. Others defend legal permission on grounds of surrogate autonomy, but often retain concerns about the surrogate. In response to the dilemma of a ban versus bald permission, we propose a 'soft law' approach: states should require several hours of education of surrogates – education aimed at informing and enhancing surrogate autonomy.     

不同扰动生境中动物对酸苔菜种子的捕食和散布

有效的种子散布是木本植物形成入侵种需要经历的过程之一,但在预测入侵种时却常常被忽略.紫金牛科东方紫金牛(Ardisia elliptica)原产热带亚洲而在北美成为入侵植物,分布在云南南部的其同属种酸苔菜(A.solariacea)与之具有相似的生物学特征.本文以酸苔菜为研究对象,于2004年12月至次年2月分别在人为干扰轻的野象谷和人为干扰重的植物园进行酸苔菜的种子散布及捕食研究,试图了解生境变化对其种子散布和种子捕食的影响.结果表明,酸苔菜在两地的种子散布者均为白喉冠鹎(Alophoixus pallidus)、黑冠黄鹎(Pycnonotus melanicterus)和灰眼短脚鹎(Iole propinqua),但3种食果实鸟类的组成比例、拜访行为、频率及种子捕食者的影响在两地均不相同.人为干扰轻的野象谷生境中白喉冠鹎、黑冠黄鹎与灰眼短脚鹎的拜访频率分别为25%、32%和26%.取食后的第一次停栖地点有4%在10 m以外;人为干扰重的植物园生境中3种鸟的拜访频率分别为67%、8%、5%,取食后的第一次停栖地点有26%在10 m以外.人工摆放种子试验表明,地面上种子捕食者主要是啮齿类;在两生境中种子捕食率均较低(2-6%),但野象谷生境中种子捕食率仍显著高于植物园生境.野象谷生境中种子还受到象鼻虫幼虫的危害,危害率为17.9±3.5%(n=512);而植物园生境中未发现种子被象鼻虫危害(n=489).干扰对生境中的动物组成及行为造成了明显影响,并可能通过种子散布与捕食的改变而间接影响与其有密切关系植物的种群动态.     

Zooplankton in a Danube River Arm near Rusovce (Slovakia)

Poor quantity of zooplankton was recorded in a Danube arm situated on the right side of the Danube River in Slovakia (river km 1857) in 2002 and 2003. All over the year the arm is significantly influenced by groundwater by reason of seepage. Because of low mean water temperature (12°C) and poorly developed macrovegetation in particular, the arm reminds gravel pit-like. The annual average of zooplankton biomass was low and ranged from 0.35 g m⁻³ (2002) to 1.28 g m⁻³ (2003), because of low crustacean abundance. Total cladoceran abundance was excessively low in both years and ranged from 3.5 N L⁻¹ (2002) to 16.6 N L⁻¹ (2003). Small species, Bosmina longirostris and Chydorus sphaericus were dominant. Only four adult Copepoda — Cyclops vicinus, Thermocyclops crassus, Eurytemora velox and Eudiaptomus gracilis — were recorded in quantitative samples of both years. In the zooplankton assemblage dominated rotifers (Synchaeta pectinata, Synchaeta oblonga, Polyarthra dolichoptera and Keratella cochlearis) which represented 78% and 67% of total abundance respectively. The total of 19 species of rotifers, 34 Cladocera species and 16 taxa of Copepoda were found.     

Biodiversity and distribution of water mites (Acari, Hydrachnidia) in spring habitats

1. The distribution, species richness and ecology of spring‐dwelling water mites in Italy were investigated with the aim to better elucidate the role of spring habitats to sustain high levels of biodiversity and their contribution to freshwater biodiversity at a local and regional scale. 2. More than 300 springs in different geographic areas (Alps, Central and Southern Apennines, Sicily and Sardinia), were examined with a total of 163 water mite species recorded. 3. Species richness in each area ranged from 33 species on Sardinia to 77 on Sicily. The highest diversity was found in the Gran Sasso (Central Apennines). The proportion of crenobionts (species strictly bound to this type of habitat) exceeded 50% in almost all the areas investigated. 4. A diverse (up to 20 species per spring) and highly specialised mite fauna was observed in undisturbed rheocrenes and in natural springs of intermediate typology (rheohelocrenes and rheopsammocrenes). In springs subjected to human impacts (pasture, deforestation, alteration and transformation of spring sources) species richness declined and crenobionts were replaced by unspecialised crenoxenes. 5. The zoogeographic importance of spring habitats is confirmed by the presence of 18 endemic species and by members of genera with an interesting disjunct and relict distribution. 6. A comparison with other geographic areas suggests that springs contain a significant fraction of the total number of species found in freshwater habitats and may contribute almost one third of regional freshwater biodiversity. The presence of endemic crenobionts and rare taxa highlights the importance of these habitats in maintaining high levels of biodiversity as well as their contribution to a better understanding of biodiversity patterns in freshwaters.     

Gradients of life-history variation: an intercontinental comparison of fishes

Multivariate analysis identified atwo-dimensional continuum of life-historyvariation among 301 fish species from Europe,North America, South America and the Atlanticand Pacific coasts of North America. The firstaxis was associated with larger body size,higher fecundity, delayed maturation, fewerreproductive events, and shorter breedingseason on one end and small size, lowfecundity, early maturity, multiplereproductive events per year, and prolongedbreeding season on the other. The second axiscontrasted fishes having larger eggs and moreparental care against fishes with the oppositesuite of traits.Phylogenetic affiliations of species wereapparent in the general patterns of ordinationof species within orders, indicatingevolutionary divergences in life-historypatterns. In fact, partitioning the variance oflife-history traits showed that taxonomic orderand latitude were the most important factorsand geographic region and habitat the least.Despite phylogenetic constraints, basiclife-history patterns showed consistencybetween distantly geographical regions,latitudinal ranges and basic adult habitats,indicating convergences in life-historypatterns. Although the basic life-historypatterns seemed repeatable among distantlyrelated taxa, geographical and latitudinalaffiliations were apparent. Species from SouthAmerica are skewed toward the opportunisticendpoint, whereas North American marine speciesare skewed toward the periodic endpoint of thetrilateral continuum model. Most of the fishspecies from South American data set came fromfluctuating environments, so an opportunisticstrategy of early maturation and continuousspawning permits efficient recolonization ofhabitats over small spatial scales. Incontrast, most species in the North Americanand European data sets came from seasonalhabitats that are nonetheless more hydrologicalstable, so a periodic strategy of delayingmaturation to attain large clutches enhancesadult survivorship during suboptimalenvironmental conditions and recruitment whenearly life stages encounter suitableenvironmental conditions. Similarly,latitudinal affiliations were also observed:opportunistic strategists more common intropical latitudes and periodic strategistsmore common in temperate and Arctic latitudes.     

Comparison of metabolomics of Dendrobium officinale in different habitats by UPLC-Q-TOF-MS

Dendrobium officinale has been considered over past centuries to be extremely valuable for use as an herbal medicine in South Asian countries. In this work, the chemical profiles of D. officinale from different habitats were systematically characterized using ultra-performance liquid chromatography time-of-flight mass spectrometry (UPLC-Q-TOF-MS) and multivariate analysis. The principal component analysis (PCA), partial least squares discriminate analysis (PLS-DA) and orthogonal partial least squares analysis (OPLS-DA) of UPLC-Q-TOF-MS data displayed an obvious separation. Several flavonoids and terpenoids derivatives contribute to the quantitative chemotypic variation within and between the samples as observed. These findings lead to a better understanding of the phytochemical variation of D. officinale which can aid in quality control of raw material.