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51.
The membrane-bound F1 sector of the H+–ATPase complex (F-type ATPase) in dark-adapted photosynthetic chromatophores is endowed with MgATP- and CaATP-dependent ATPase
activities, both sensitive to inhibitors such as oligomycin and venturicidin. Because of contatamination of free Mg2
+ and Ca2+ ions in chromatophore preparations, kinetic characterization of the two hydrolitic reactions can be performed only in the
presence of both substrates, using a model for two alternative substrates. The two activities are characterized by similar
maximal rates and affinity constants [VMgATP and VCaATP: 13±1 and 10±1 nmol s–1 ATP hydrolyzed (μmol BChl)–1; KMgATP and KCaATP: 0.22±0.06 and 0.20±0.05 mm]. However, only the MgATP-dependent ATPase is coupled to Δ*H
+ generation. In this process CaATP acts as an alternative substrate and a competitive inhibitor of the proton pump, with a
KI coincident with KCaATP for the hydrolytic activity. This finding highlights the central role that the coordination chemistry of the ion-nucleotide
complex plays in determining the proton gating mechanism at the catalytic site(s) of the enzyme complex. These results are
discussed on the basis of the coordination properties of the ions and of the available information on the protein structure.
Received: 5 December 1995 / Accepted: 7 March 1996 相似文献
52.
朱砂叶螨羧酸脂酶最优测试条件的选择 总被引:1,自引:0,他引:1
应用二次回归通用旋转组合设计,对朱砂叶螨离体羧酸酯酶测试过程中所需缓冲液pH值、恒温时间、反应温度及底物浓度,设立4因子5水平试验,在考虑4个因子主效应和互作效应的情况下,筛选测试羧酸酯酶的最优条件组合。 相似文献
53.
The dynamic change in the overall detachment rate of spherical biofilms in a biofilm airlift suspension reactor was measured after a downshift of the substrate loading rate to zero while all other conditions remained constant. In contrast to the expectations, the overall detachment rate decreased rapidly to a nearly stable level. Correlations available from literature were not able to describe this phenomenon. Concepts were formulated which can describe the observations from this study. Research under dynamic conditions and careful monitoring of the biofilm surface area and biofilm morphology are necessary to elucidate and discriminate biofilm detachment mechanisms. (c) 1995 John Wiley & Sons, Inc. 相似文献
54.
Relation to habitat in rotifers 总被引:4,自引:2,他引:2
Rotifera should be especially suited for an analysis of habitat relations because this group contains such a high number of species, inhabiting diverse environments. Furthermore, rotifers are to a large extent cosmopolitan, implying that ecological barriers, rather than geographical, are decisive of their distribution. In this review a short characterization of the rotifer fauna in different habitats is given, whereby macroenvironments and microenvironments are reported separately. The macroenvironments are classified as follows: harmonious lakes and ponds, arctic and antarctic waters, hot springs, hypertrophic-saprobic environments, mires, strongly acidic waters, saline waters, temporary water bodies, subterranean waters, running waters, oceans, terrestrial environments. The following microenvironments are distinguished: macrophytes (housing periphytic rotifers), open water (with planktic forms), minerogenous sediments (with psammon and hyporheos), organogenous sediments, other organisms (i.e. parasites and epizoans).Many rotifers are more or less euryecious, while relatively few are strongly restricted in their choice of habitat. In extreme environments a low number of species is found, but often a high number of individuals within these species. These rotifers are usually primary consumers, and for natural reasons extreme environments are characterized by a low number of trophic levels.In environments with a high species number the separate species differ very much in their morphology, making it difficult to find common traits which may be interpreted as adaptations to the respective habitats. The most apparent adaptations ought to be found among the planktic rotifers, and these adaptations seem to constitute largely a protection against predators. Rotifers in extreme environments are usually not very apart in a morphological or taxonomical respect, with their most close relatives living in normal habitats and sometimes euryecious (an apparent exception from this rule is formed by the class Seisonidea). Adaptations to deviating chemical and physical environments may develop relatively rapidly (seen from a geological perspective), while the more fundamental changes (occurring during a longer period of time) seem to be a response to biotic factors (e.g., the development of different types of trophi for facilitating food collection). 相似文献
55.
A kinetic model that describes substrate interactions during reductive dehalogenation reactions is developed. This model describes how the concentrations of primary electron-donor and -acceptor substrates affect the rates of reductive dehalogenation reactions. A basic model, which considers only exogenous electron-donor and -acceptor substrates, illustrates the fundamental interactions that affect reductive dehalogenation reaction kinetics. Because this basic model cannot accurately describe important phenomena, such as reductive dehalogenation that occurs in the absence of exogenous electron donors, it is expanded to include an endogenous electron donor and additional electron acceptor reactions. This general model more accurately reflects the behavior that has been observed for reductive dehalogenation reactions. Under most conditions, primary electron-donor substrates stimulate the reductive dehalogenation rate, while primary electron acceptors reduce the reaction rate. The effects of primary substrates are incorporated into the kinetic parameters for a Monod-like rate expression. The apparent maximum rate of reductive dehalogenation (q
m, ap
) and the apparent half-saturation concentration (K
ap
) increase as the electron donor concentration increases. The electron-acceptor concentration does not affect q
m, ap
, but K
ap
is directly proportional to its concentration.Definitions for model parameters RX
halogenated aliphatic substrate
- E-M
n
reduced dehalogenase
- E-M
n+2
oxidized dehalogenase
- [E-M
n
]
steady-state concentration of the reduced dehalogenase (moles of reduced dehalogenase per unit volume)
- [E-M
n+2]
steady-state concentration of the oxidized dehalogenase (moles of reduced dehalogenase per unit volume)
- DH2
primary exogenous electron-donor substrate
- A
primary exogenous electron-acceptor substrate
- A2
second primary exogenous electron-acceptor substrate
- X
biomass concentration (biomass per unit volume)
- f
fraction of biomass that is comprised of the dehalogenase (moles of dehalogenase per unit biomass)
-
stoichiometric coefficient for the reductive dehalogenation reaction (moles of dehalogenase oxidized per mole of halogenated substrate reduced)
-
stoichiometric coefficient for oxidation of the primary electron donor (moles of dehalogenase reduced per mole of donor oxidized)
-
stoichiometric coefficient for oxidation of the endogenous electron donor (moles of dehalogenase reduced per unit biomass oxidized)
-
stoichiometric coefficient for reduction of the primary electron acceptor (moles of dehalogenase oxidized per mole of acceptor reduced)
-
stoichiometric coefficient for reduction of the second electron acceptor (moles of dehalogenase oxidized per mole of acceptor reduced)
- r
RX
rate of the reductive dehalogenation reaction (moles of halogenated substrate reduced per unit volume per unit time)
- r
d1
rate of oxidation of the primary exogenous electron donor (moles of donor oxidized per unit volume per unit time)
- r
d2
rate of oxidation of the endogenous electron donor (biomass oxidized per unit volume per unit time)
- r
a1
rate of reduction of the primary exogenous electron acceptor (moles of acceptor reduced per unit volume per unit time)
- r
a2
rate of reduction of the second primary electron acceptor (moles of acceptor reduced per unit volume per unit time)
- k
RX
mixed second-order rate coefficient for the reductive dehalogenation reaction (volume per mole dehalogenase per unit time)
- k
d1
mixed-second-order rate coefficient for oxidation of the primary electron donor (volume per mole dehalogenase per unit time)
- k
d2
mixed-second-order rate coefficient for oxidation of the endogenous electron donor (volume per mole dehalogenase per unit time)
- b
first-order biomass decay coefficient (biomass oxidized per unit biomass per unit time)
- k
a1
mixed-second-order rate coefficient for reduction of the primary electron acceptor (volume per mole dehalogenase per unit time)
- k
a2
mixed-second-order rate coefficient for reduction of the second primary electron acceptor (volume per mole dehalogenase per unit time)
- q
m,ap
apparent maximum specific rate of reductive dehalogenation (moles of RX per unit biomass per unit time)
- K
ap
apparent half-saturation concentration for the halogenated aliphatic substrate (moles of RX per unit volume)
- k
ap
apparent pseudo-first-order rate coefficient for reductive dehalogenation (volume per unit biomass per unit time) 相似文献
56.
Izaura Yoshico Hirata Maria Helena Sedenho Cezari Clovis Ryuichi Nakaie Paulo Boschcov Amando Siuiti Ito Maria Aparecida Juliano Luiz Juliano 《Letters in Peptide Science》1995,1(6):299-308
Summary A general procedure, using the commonly employed solid-phase peptide synthesis methodology for obtaining internally quenched fluorogenic peptides with ortho-aminobenzoyl/dinitrophenyl groups as donor-acceptor pairs, is presented. The essential feature of this procedure is the synthesis of an N
-Boc or-Fmoc derivative of glutamic acid with the -carboxyl group bound to N-(2,4-dinitrophenyl)-ethylenediamine (EDDnp), which provides the quencher moiety attached to the C-terminus of the substrate. The fluorescent donor group, ortho-aminobenzoic acid (Abz), is incorporated into the resin-bound peptide in the last coupling cycle. Depending on the resin type used, Abz-peptidyl-Gln-EDDnp or Abz-peptidyl-Glu-EDDnp is obtained. Using the procedure described above, substrates for human renin and tissue kallikreins were synthesised. Spectrofluorimetric measurements of Abz bound to the -amino group of proline showed that strong quenching of Abz fluorescence occurs in the absence of any acceptor group. 相似文献
57.
Structure-based mutational analysis of serine protease specificity has produced a large database of information useful in addressing biological function and in establishing a basis for targeted design efforts. Critical issues examined include the function of water molecules in providing strength and specificity of binding, the extent to which binding subsites are interdependent, and the roles of polypeptide chain flexibility and distal structural elements in contributing to specificity profiles. The studies also provide a foundation for exploring why specificity modification can be either straightforward or complex, depending on the particular system. 相似文献
58.
Engineering the substrate specificity of rhizopuspepsin: the role of Asp 77 of fungal aspartic proteinases in facilitating the cleavage of oligopeptide substrates with lysine in P1. 下载免费PDF全文
W. T. Lowther P. Majer B. M. Dunn 《Protein science : a publication of the Protein Society》1995,4(4):689-702
Rhizopuspepsin and other fungal aspartic proteinases are distinct from the mammalian enzymes in that they are able to cleave substrates with lysine in the P1 position. Sequence and structural comparisons suggest that two aspartic acid residues, Asp 30 and Asp 77 (pig pepsin numbering), may be responsible for generating this unique specificity. Asp 30 and Asp 77 were changed to the corresponding residues in porcine pepsin, Ile 30 and Thr 77, to create single and double mutants. The zymogen forms of the wild-type and mutant enzymes were overexpressed in Escherichia coli as inclusion bodies. Following solubilization, denaturation, refolding, activation, and purification to homogeneity, structural and kinetic comparisons were made. The mutant enzymes exhibited a high degree of structural similarity to the wild-type recombinant protein and a native isozyme. The catalytic activities of the recombinant proteins were analyzed with chromogenic substrates containing lysine in the P1, P2, or P3 positions. Mutation of Asp 77 resulted in a loss of 7 kcal mol-1 of transition-state stabilization energy in the hydrolysis of the substrate containing lysine in P1. An inhibitor containing the positively charged P1-lysine side chain inhibited only the enzymes containing Asp 77. Inhibition of the Asp 77 mutants of rhizopuspepsin and several mammalian enzymes was restored upon acetylation of the lysine side chain. These results suggest that an exploitation of the specific electrostatic interaction of Asp 77 in the active site of fungal enzymes may lead to the design of compounds that preferentially inhibit a variety of related Candida proteinases in immunocompromised patients. 相似文献
59.
Martin Poe Joseph K. Wu Tsau-Yen Lin Karst Hoogsteen Herbert G. Bull Eve E. Slater 《Analytical biochemistry》1984,140(2):459-467
A synthetic tetradecapeptide, H-Asp-Arg-Val-Tyr-Ile-His-Pro-Phe-His-Leu-Val-Ile-His-Ser-OH, which corresponds to the 13 amino terminal residues of human angiotensinogen plus a carboxy terminal serine to replace a suggested site of carbohydrate attachment, has been shown to be a good substrate for human kidney renin. At pH 7.2 and 37 degrees C the KM or Michaelis constant was 8.4 +/- 2.9 microM, and the VM or velocity at infinite tetradecapeptide concentration was 11.3 +/- 2.4 mumol angiotensin I made per hour per milligram renin. The tetradecapeptide was highly resistant to cleavage by mouse submaxillary renin. The tetradecapeptide was also slowly cleaved by human liver cathepsin D, by rabbit lung angiotensin-converting enzyme, and by reconstituted human serum, but did not yield angiotensin I. Thus, this synthetic renin substrate should permit more specific measurement of human kidney renin activity. 相似文献
60.
T. K. Kirk E. Schultz W. J. Connors L. F. Lorenz J. G. Zeikus 《Archives of microbiology》1978,117(3):277-285
Culture parameters influencing metabolism of synthetic14C-lignins to14CO2 in defined media have been studied in shallow batch cultures of the ligninolytic wood-destroying HymenomycetePhanerochaete chrysosporium Burds. Study of the effect of O2 concentration in the gas phase above non-agitated cultures indicated essentially complete absence of attack on the lignin polymer at 5% O2 in N2, and a 2- to 3-fold enhancement by 100% O2 as compared to air (21% O2). Agitation of the cultures resulting in the formation of mycelial pellets greatly suppressed lignin decomposition. The optimum culture pH for lignin decomposition was 4 to 4.5, with marked suppression above 5.5 and below 3.5. The source of nutrient nitrogen (NO
3
–
, NH
4
+
, amino acids) had little influence on lignin decomposition, but the concentration of nitrogen was critical; decomposition at 24 mM was only 25–35% of that at 2.4 mM N. Thiamine was the only vitamin required for growth and lignin decomposition. Under the optimum conditions developed, decomposition of 5 mg of synthetic lignin was accompanied by utilization of approximately 100 mg of glucose. The influence of the various culture parameters was analogous for metabolism of synthetic lignin labeled in the ring-,side chain-, and methoxyl carbon atoms. 相似文献