基于结构方程模型分析荒漠啮齿动物优势种对不同放牧干扰的响应

放牧被认为是草地生态系统的主要干扰之一。许多研究表明,放牧影响了啮齿动物的个体条件、繁殖、种群动态、群落组成及群落多样性等多个方面。由于受传统统计学方法的限制,这些研究只是单独的对放牧作用进行假设检验,而没有将多个假设放在同一个框架内进行验证。2006—2011年,采用标志重捕法对内蒙古阿拉善荒漠区不同放牧生境中啮齿动物优势种的数量进行研究并使用结构方程建模的方法将可能影响荒漠啮齿动物优势种的环境因子(气候条件、土壤硬度、植物隐蔽、植物生物量等19个指标)与啮齿动物优势种种群动态结合后进行多假设检验,旨在找出不同放牧干扰下制约优势啮齿动物环境因子的发生途径。结果表明:气候条件对五趾跳鼠和三趾跳鼠有直接不利影响,隐蔽对于两足活动的五趾跳鼠有负效应,而对四足活动的子午沙鼠有正效应。植物生物量对五趾跳鼠有正效应,但对子午沙鼠有负效应。土壤硬度的增加间接的有利于五趾跳鼠,对子午沙鼠有直接的正效应。因此荒漠啮齿动物优势种种群动态是多个过程共同作用的结果,气候条件是驱动啮齿动物种群动态的根本原因,而放牧会因为改变植物隐蔽而影响啮齿动物在群落中的组成。     

基于RS的湖岸带物理结构完整性评价方法——以查干湖为例

以查干湖流域为研究区,利用RS和GIS技术,基于水利部《河流(湖)健康评估指标、标准与方法 V1.0》并加以改进,以500m×1000m为评价基本单元,整个研究区共有315个物理结构基本评价单元,建立基于RS的湖岸带物理结构完整性评价体系,该评价体系由目标层、准则层和指标层构成,其中准则层由湖岸带状况、湖岸线发育率和湖泊萎缩率3项组成,指标层由地形坡度、植被覆盖率等8项指标构成。研究结果表明:38个监测点中,查干湖23个,新庙泡15个,基于RS物理结构评价结果分别为0.67—0.76和0.35—0.45,地面实测评价结果分别是0.64—0.77和0.35—0.55。两种评价方法结果一致,并表明查干湖的湖岸带物理结构健康状态属于健康,新庙泡则属于亚健康。     

Clinical, morphological, biochemical, and neuroradiological features of mitochondrial encephalomyopathies. Presentation of 19 patients

Nineteen patients (9 females, 10 males) with mitochondrial encephalomyopathies (ME) were studied. The diagnosis was established according to clinical and histopathological criteria. Leading clinical features were chronic progressive external ophthalmoplegia (CPEO) and muscle weakness in 95% of the patients. Pigmentary retinopathy was seen in 63%, and was always associated with CPEO. Hypacusis was present in 47% and cerebellar ataxia in 63% of patients. Clinical or electrophysiological signs of involvement of the central nervous system (CNS) were found in 21% of the patients. In muscle biopsy ragged red fibers were the predominant histopathological findings (100% of the patients), while COX-negative fibers were seen in 74%, deletions of the mitochondrial DNA in 42%, and defects of the respiratory chain in 32% of the patients. Increased blood lactate levels were found in 79% of the patients. Needle electromyography revealed myopathic features in 74%, features of denervation in 16%, and w as normal in the remainder. Imaging studies showed cerebral atrophy in 58%, cerebellar atrophy in 16%, and hyperintense lesions of the white matter, pyramidal tract or extrapyramidal system in 16% of the cases. It is concluded that the clinical manifestations of ME can be very variable. Diagnosis of ME should be always considered in young patients presenting with CPEO and muscle weakness. In most cases, diagnosis can be made by a few selected investigations, while detection of genetic abnormalities may lead to the diagnosis in the remaining cases. (Mol Cell Biochem 174: 297–303, 1997)     

应用结构方程模型解析影响黄连木果实产量 和种子命运的因素

果实(种子)产量和质量是影响植物种群更新的重要因素。为了探明影响黄连木果实产量和种子命运的因素以及这些影响因素之间的相互作用, 作者于2009年对河南省济源市45株黄连木(Pistacia chinensis)结果样树的植株特征、果实特征、果实产量和种子命运等进行了测定, 并用结构方程模型进行综合分析。结果表明: (1)黄连木果实产量与树高、树冠面积和果序大小等特征成正相关, 但与胸径、果实大小相关性不显著; (2)与捕食者饱和假说的预测不一致, 单株果实产量对黄连木广肩小蜂(Eurytoma plotnikovi)的种子捕食率(即虫蛀率)无显著直接负向效应; (3)树高和果实大小对虫蛀率为显著直接正向效应, 胸径对虫蛀率为显著直接负向效应, 显示黄连木广肩小蜂对植株特征和果实特征有一定的选择能力; (4)空壳率与虫蛀率成显著负相关, 空壳果实越多, 越易逃避黄连木广肩小蜂的寄生, 空壳果实的存在对完好种子起到了一定保护作用, 可能是黄连木防御昆虫寄生的重要机制; (5)空壳率和虫蛀率对种子完好率有显著直接负向效应, 而胸径、果序大小和果实产量对完好率为间接正向效应, 树高和果实大小为间接负向效应。可见, 黄连木植株特征和果实特征均不同程度地影响其果实产量和昆虫寄生, 从而影响黄连木的种子质量和种群更新。     

Using pseudo-amino acid composition and support vector machine to predict protein structural class

As a result of genome and other sequencing projects, the gap between the number of known protein sequences and the number of known protein structural classes is widening rapidly. In order to narrow this gap, it is vitally important to develop a computational prediction method for fast and accurately determining the protein structural class. In this paper, a novel predictor is developed for predicting protein structural class. It is featured by employing a support vector machine learning system and using a different pseudo-amino acid composition (PseAA), which was introduced to, to some extent, take into account the sequence-order effects to represent protein samples. As a demonstration, the jackknife cross-validation test was performed on a working dataset that contains 204 non-homologous proteins. The predicted results are very encouraging, indicating that the current predictor featured with the PseAA may play an important complementary role to the elegant covariant discriminant predictor and other existing algorithms.     

石杉碱甲结构改造的研究进展

石杉碱甲是高效、高选择性的可逆性乙酰胆碱酯酶抑制剂,是治疗早老性痴呆症的一个有前景的药物.本文概述了石杉碱甲的性质、结构和构效关系,从结构简化、C10、吡啶酮环、脂桥环、环外双键和桥头氨基等方面综述了石杉碱甲结构改造的研究进展,并描述了所得的新型石杉碱甲类似物的抗乙酰胆碱酯酶的生物活性.在已合成的大量的石杉碱甲类似物中,部分类似物的活性优于天然石杉碱甲,石杉碱甲结构改造的研究取得了可喜的进展.     

The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

After more than a decade of method development, cross-linking in combination with mass spectrometry and bioinformatics is finally coming of age. This technology now provides improved opportunities for modelling by mapping structural details of functional complexes in solution. The structure of proteins or protein complexes is ascertained by identifying amino acid pairs that are positioned in close proximity to each other. The validity of this technique has recently been benchmarked for large multi-protein complexes, by comparing cross-link data with that from a crystal structure of RNA polymerase II. Here, the specific nature of this cross-linking data will be discussed to assess the technical challenges and opportunities for model building. We believe that once remaining technological challenges of cross-linking/mass spectrometry have been addressed and cross-linking/mass spectrometry data has been incorporated into modelling algorithms it will quickly become an indispensable companion of protein and protein complex modelling and a corner-stone of integrated structural biology.     

木薯雌雄花分化形态结构观察及生理调控研究

本研究以木薯品种新选048为试验材料,观察和测定木薯花分化各时期的形态结构、内源激素及碳氮化合物含量,并开展木薯雌雄花分化的外源激素调控研究,揭示木薯花分化规律,初步探究木薯花分化的生理机制.试验结果表明:木薯从花芽分化开始到完成开花的全过程需要30 d,分化出的花序主要有全雄花序和雌少雄多花序两种类型,木薯性别分化前...     

Complement activation,regulation, and molecular basis for complement‐related diseases

The complement system is an essential element of the innate immune response that becomes activated upon recognition of molecular patterns associated with microorganisms, abnormal host cells, and modified molecules in the extracellular environment. The resulting proteolytic cascade tags the complement activator for elimination and elicits a pro‐inflammatory response leading to recruitment and activation of immune cells from both the innate and adaptive branches of the immune system. Through these activities, complement functions in the first line of defense against pathogens but also contributes significantly to the maintenance of homeostasis and prevention of autoimmunity. Activation of complement and the subsequent biological responses occur primarily in the extracellular environment. However, recent studies have demonstrated autocrine signaling by complement activation in intracellular vesicles, while the presence of a cytoplasmic receptor serves to detect complement‐opsonized intracellular pathogens. Furthermore, breakthroughs in both functional and structural studies now make it possible to describe many of the intricate molecular mechanisms underlying complement activation and the subsequent downstream events, as well as its cross talk with, for example, signaling pathways, the coagulation system, and adaptive immunity. We present an integrated and updated view of complement based on structural and functional data and describe the new roles attributed to complement. Finally, we discuss how the structural and mechanistic understanding of the complement system rationalizes the genetic defects conferring uncontrolled activation or other undesirable effects of complement.