恩拉霉素生产菌株的遗传改造

【目的】提高杀真菌素链霉菌发酵生产恩拉霉素的产量。【方法】利用定点突变技术,对恩拉霉素生产菌株杀真菌素链霉菌F1中影响细胞次级代谢及抗生素合成的核糖体S12蛋白的编码基因rps L进行改造,将第43位的赖氨酸(Lys)分别替换为天冬酰胺(Asn)和精氨酸(Arg),并对改造菌株L-M1(Asn43)和L-M2(Arg43)的生长特性、抗生素合成以及摇瓶发酵性能进行研究。【结果】与野生型菌株相比,改造菌株的生长特性及生理生化特性均发生了明显的改变:产孢周期明显缩短,野生型菌株在MS培养基中,28°C下需要培养5-7 d后才能产生孢子,而在相同条件下,改造菌株3 d后就能产生大量的孢子;恩拉霉素产量相对提高,摇瓶发酵条件下,改造菌株L-M1(Asn43)和L-M2(Arg43)的恩拉霉素产量分别可达到1 334 U/m L和1 456 U/m L,与野生型菌株F1相比分别提高了11.9%和22.1%。【结论】通过遗传改造,恩拉霉素的产量得到了提高,为其他位点的遗传改造提供了可行性。     

73例中国人血友病甲基因突变的分析

我们用Southern blotting、PCR、变性梯度凝胶电泳(DGGE)和DNA测序等方法对73例血友病甲患者(经上海瑞金医院测定血浆FVⅢ:C和vWF:Ag诊断,其中无亲缘关系患者65例,按FVⅢ:C水平分为轻、中、重三型。FVⅢ:C< 2%为重型,共47例;FVⅢ:C 2%-5%为中型,共9例;FVⅢ:C5%-25%为轻型,共1 7例)进行FVⅢ基因突变检测。共检出内含子22倒位23例,均为重型,约占重型的49%,与国外报道相似。余下50例(其中无亲缘关系者45)用PCR-DGG E分析所有外显子及其侧翼内含子序列,发现异常条带则进行DNA测序。在17例患者中检出突变13种,其中无义突变5种,均为重型;错义突变6种,除1例外都是轻中型;小缺失2例,都是重型;其中,AA466Lys(AAG)-Thr(ACG)、719Tyr(TAC)-Stop(TAG)、AA826 Asp(GAC)-Glu(GAA)、312Ile(ATC)-xxC及AA1551-1552del(AGAA)为新发现的突变。有亲缘关系的患者都有相同的基因突变,而在无亲缘关系患者未发现相同突变。基因突变与临床表现基本相符。 Abstract:We use Southern blotting,PCR,denaturing gradient gel electrophoresis(DGGE)and DNA sequencing to detect gene mutations of haemophilia A in Chinese population.73 cases(47 severe)(FVIII:C<2%),9 moderate(FVIII:C 2%~5%),17 mild(FVIII:C 5%~25%)of haemophilia A were first screened with Southern blotting,23 were found to be the intron 22 inversion type,all being severe cases.The remaining 50 cases without intron 22 in version were examined with PCR-DGGE.Genomic DNA were amplified using GC-clamped primers covering all the exons and all flanking intron regions.Abnormal bands were sequenced.13 different mutations were identified,including 5 nonsense mutations,6 missense mutations and 2 small deletions.5 mutations,AA466Lys(AAG)-Thr(ACG),AA719Tyr(TAC)-Stop(TAG),AA826Asp(GAC)-Glu(GAA),AA312Ile(ATC)-xxC and AA1551-1552del(AGAA)have not been reported before.Generally the genetic defects correspond to the clinical conditions.     

植酸酶phyAm基因结构延伸突变改善酶的热稳定性

将来源于黑曲霉N25的植酸酶基因phyA^m重组于大肠杆菌表达载体pET-30b（＋）,以重组表达载体pET30b-FphyA^e为模板经PCR扩增获得结构延伸突变植酸酶基因phyA^m（在植酸酶基因C端增加了来源于pET-30b-FphyA^m载体上13氨基酸残基）。含突变基因的重组表达载体pPIC9k-phyA^e在GS115酵母中表达。纯化的突变酶pp-NP^e与野生型酶PP-NP^m-8相比：PP-NPA^e的最适反应温度上升了3气,75℃处理10min,热稳定性提高21％,比活力略有提高。最适反应pH为5．6,有效pH范围pH4,6到pH6．6。比未突变酶扩大了0.4单位。     

纳米金在基因突变检测及SNP分析中的应用

对特异核苷酸序列的高选择性检测在生物医学研究和临床检测中日趋重要. 纳米金特殊的光学性质、电学性质、化学性质、以及良好的生物相容性,使之成为检测生物大分子的首选工具.本文介绍了几种典型的基因突变检测及单核苷酸多态性(SNP)分析系统：基因芯片、生物传感器和光学检测系统.综述了多种颇有新意的检测方法和原理,详细阐明了它们的检测机制和研究进展,分析并比较了纳米金不同的作用方式,为纳米金在突变检测上的进一步研究提供了一定思路和参考.     

TSNAdb: A Database for Tumor-specific Neoantigens from Immunogenomics Data Analysis

Tumor-specific neoantigens have attracted much attention since they can be used as biomarkers to predict therapeutic effects of immune checkpoint blockade therapy and as potential targets for cancer immunotherapy. In this study, we developed a comprehensive tumor-specific neoantigen database (TSNAdb v1.0), based on pan-cancer immunogenomic analyses of somatic mutation data and human leukocyte antigen (HLA) allele information for 16 tumor types with 7748 tumor samples from The Cancer Genome Atlas (TCGA) and The Cancer Immunome Atlas (TCIA). We predicted binding affinities between mutant/wild-type peptides and HLA class I molecules by NetMHCpan v2.8/v4.0, and presented detailed information of 3,707,562/1,146,961 potential neoantigens generated by somatic mutations of all tumor samples. Moreover, we employed recurrent mutations in combination with highly frequent HLA alleles to predict potential shared neoantigens across tumor patients, which would facilitate the discovery of putative targets for neoantigen-based cancer immunotherapy. TSNAdb is freely available at http://biopharm.zju.edu.cn/tsnadb.     

中国1995～1999年鸡传染性支气管炎病毒地方分离株核蛋白基因的遗传变异分析

应用RT-PCR方法扩增到了我国1995~1999年10株IBV现地分离株的核蛋白基因片段,并将其进行了克隆、序列测定及分析。结果发现,10株IBV分离株核蛋白基因均含有一个长1 230bp的ORF,编码由409个氨基酸残基组成的多肽,未发现碱基的插入和缺失。与GenBank中的20个IBV参考毒株核蛋白基因序列进行比较和分析,发现本研究分离的毒株主要分布于3个群中,该3群病毒主要包括我国IBV现地分离株。对n基因及其局部功能区序列比较发现,我国分离株与H120疫苗株N蛋白存在广泛的氨基酸变异。通过与s1基因系统发育进化树比较发现,我国IBV分离株存在基因重组现象。以上结果表明我国1995~1999年IBV毒株存在基因突变和基因重组现象。     

Phospholipase A2-like activity of human bocavirus VP1 unique region

Human bocavirus (HBoV) is a new parvovirus first discovered in 2005, which is associated with acute respiratory infection. Analysis of sequence homology has revealed that a putative phospholipase A₂ (PLA₂) motif exists in the VP1 unique region of HBoV. However, little is known about whether the VP1 unique region of HBoV has PLA₂ enzymatic activity and how these critical residues contribute to its PLA₂ activity. To address these issues, the VP1 unique region protein and four of its mutants, were expressed in Eschericha coli. The purified VP1 unique protein (VP1U) showed a typical Ca²⁺-dependent secreted PLA₂-like (sPLA₂) activity, which was inhibited by sPLA₂-specific inhibitors in a time-dependent manner. Mutation of one of the amino acids (21Pro, 41His, 42Asp or 63Asp) in VP1U almost eliminated the sPLA₂ activity of HBoV VP1U. These data indicate that VP1U of HBoV has sPLA₂-like enzymatic activity, and these residues are crucial for its sPLA₂-like activity. Potentially, VP1U may be a target for the development of anti-viral drugs for HBoV.     

puc启动子上游DNA二元对称序列突变对Rhodobacter sphaeroides氧调节的影响

为了鉴定ｐｕｃＢＡ基因表达受氧调控的顺式调节位点,通过ＰＣＲ和多聚核苷酸定点、突变的体外操作,在ｐｕｃ转录子５＇上游非编码区产生了７个不同突变和５个不同１０ｂＰ缺失序列。构建了含有各种顺式突变的ｐｕｃ上游区、ｐｕｃ启动子和报告基因ｌａｃＺ的转录融合子。通过融合子β－半乳糖苷酶活性分析,发现位于ｐｕｃ启动子上游二元对称结构的突变使得ｐｕｃ基因在有氧条件下去阻遏表达。ＩＨＦ束缚位点的突变可使β－半乳糖苷酶活性提高。     

N-酰基高丝氨酸内酯酶的分子改造及酶学特性

革兰氏阴性细菌的群体感应系统利用N-酰基高丝氨酸内酯（N-acyl-homoserine lactone, AHL）作为主要信号分子诱导致病因子表达,造成细菌性病害. N-酰基高丝氨酸内酯酶（N-acyl-homoserine lactonase, AHLase）能水解AHL分子的内酯键,减弱致病菌的危害.本研究利用从苏云金芽孢杆菌克隆的N-酰基高丝氨酸内酯酶基因（auto inducer inactivation A, aiiA）,根据Swiss-model模拟aiiA所编码的AiiA蛋白三维结构,预测可能形成的分子内盐桥、活性中心位点等,利用环状诱变方法对AiiA进行定点突变,以期提高其酶活力和热稳定性等酶学性能.对AiiA及其突变蛋白酶学特性分析结果发现,突变体AiiA-N65K-A206E酶活力要比野生型AiiA-wild提高87.4%,并表现出良好的热稳定性和储存稳定性;37 ℃温浴30 min后酶活力剩余73;9%,比AiiA-wild有了大幅提高;4 ℃储存120 h后酶活力剩余12.9%,而AiiA-wild丧失酶活力.酶动力学分析表明,AiiA-N65K-A206E酶促反应的米氏常数Km为1.23 mmol/L,与野生型相当;最大反应速率Vmax为32.36 μmol/L/min,比野生型有较大提高.本研究表明,利用定点突变技术改造AiiA的分子结构,可有效提升AiiA酶活力、热稳定性和储存稳定性.本研究结果为进一步阐明AiiA结构与功能的关系,促进AiiA在植物病害生物防治上的应用,提供了有益的参考和新的思路.     

赤霉素产生菌~#85104菌株原生质体的形成再生和紫外光对原生质体诱变条件的研究

赤霉产生菌在正常条件下不产生孢子,育种材料以多核菌丝体及其碎片为主,大部分常用的诱变剂对它们诱变效应较差。本文报导有关赤霉素产生菌~#85104菌株原生质体的获得、再生和紫外光诱变原生质体的条件,甘氨酸对菌丝体生长的影响,以及采用二硫苏糖醇预处理菌丝体等方面条件的研究。在采用紫外光照射原生质体的诱变处理下,已获得数株高产的新菌株。