Implications of the gene balance hypothesis for dosage compensation

Dosage compensation refers to the equal expression between the sexes despite the fact that the dosage of the X chromosome is different in males and females. In Drosophila there is a twofold upregulation of the single male X. In triple X metafemales, there is also dosage compensation, which occurs by a two-thirds downregulation. There is a concomitant reduction in expression of many autosomal genes in metafemales. The male specific lethal (MSL) complex is present on the male X chromosome. Evidence is discussed showing that the MSL complex sequesters a histone acetyltransferase to the X chromosome to mute an otherwise increased expression by diminishing the histone acetylation on the autosomes. Several lines of evidence indicate that a constraining activity occurs from the MSL complex to prevent overcompensation on the X that might otherwise occur from the high level of acetylation present. Together, the evidence suggests that dosage compensation is a modification of a regulatory inverse dosage effect that is a reflection of intrinsic gene regulatory mechanisms and that the MSL complex has evolved in reaction in order to equalize the expression on both the X and autosomes of males and females.     

The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation

Self/non‐self discrimination is a fundamental requirement of life. Endogenous peptides presented by major histocompatibility complex class I (MHC I) molecules represent the essence of self for CD8 T lymphocytes. These MHC I peptides (MIPs) are collectively referred to as the immunopeptidome. From a systems‐level perspective, very little is known about the origin, composition and plasticity of the immunopeptidome. Here, we show that the immunopeptidome, and therefore the nature of the immune self, is plastic and moulded by cellular metabolic activity. By using a quantitative high‐throughput mass spectrometry‐based approach, we found that altering cellular metabolism via the inhibition of the mammalian target of rapamycin results in dynamic changes in the cell surface MIPs landscape. Moreover, we provide systems‐level evidence that the immunopeptidome projects at the cell surface a representation of biochemical networks and metabolic events regulated at multiple levels inside the cell. Our findings open up new perspectives in systems immunology and predictive biology. Indeed, predicting variations in the immunopeptidome in response to cell‐intrinsic and ‐extrinsic factors could be relevant to the rational design of immunotherapeutic interventions.     

Ecto- or arbuscular mycorrhizas – which are best?

Ecological theories concerning the relationship of suites of traits with resource supply and plant potential growth rate have concentrated primarily on leaf structure and physiology – much less is known about interspecific patterns of variation in root structure and physiology. In this issue, Wahl & Ryser reduce this knowledge gap by demonstrating important correlations of root structure with potential growth rate and height among a range of perennial temperate grass species adapted to sites of a wide range of fertility (see pp. 459–471).     

Beyond the Food Web Connections to a Deeper Industrial Ecology

Industrial ecology is a school of thought based, in part, upon a simple analogy between industrial systems and ecological systems in terms of their material and energy flows. This article argues for a more sophisticated connection between these diverse systems based on the fact that they are all complex self-organizing systems, operating far from thermodynamic equilibrium. As such, industrial and ecological systems have in common certain constraints and dynamic properties that move beyond the central metaphor of industrial ecology and could align these systems under a more comprehensive analytical framework. If incorporated at a fundamental level, the complex systems framework could add depth and sophistication to the field of industrial ecology.     

Mitochondrial glycosidic residues contribute to the interaction between ruthenium amine complexes and the calcium uniporter

The role of glycosidic residues in the inhibitory properties of ruthenium complexes on mitochondrial calcium uptake was determined in mitoplasts.Our results showed that the binding and inhibitory properties of ruthenium amine complexes were modified when mitoplasts were exposed to N-glycosidase F action, but calcium uptake was not altered. N-linked proteins of the mitochondrial inner membrane were identified. We detected an 18-kDa protein that binds labeled Ru₃₆₀ under control conditions, but failed to bind the inhibitor after deglycosilation. A relationship between this protein and the action of ruthenium amine inhibitors of the mitochondrial uniporter is proposed.     

Role of changing environmental parameters in leaf gas exchange of <Emphasis Type="Italic">Arbutus unedo</Emphasis> L. assessed by field and laboratory measurements

In the frame of the foreseen climate global changes we analysed the physiological responses of Arbutus unedo L. to the variations of carbon dioxide concentration, leaf temperature, and irradiance by measurements of leaf gas exchange and leaf water potential performed both in field and in the laboratory. Stomatal conductance was not affected by increase of leaf temperature. The growth conditions of potted plants likely made stomata more sensitive to the variation of external parameters than naturally growing plants. The interaction between high CO₂ concentration and temperature involved important down-regulation mechanisms in the metabolic pathway of the carbon fixation. From an ecological point of view, the ability of A. unedo to adapt to the field stress makes it highly competitive in the Mediterranean plant community.     

Effects of grazing on photosynthetic characteristics of major steppe species in the Xilin River Basin,Inner Mongolia,China

Species composition and photosynthetic characteristics of dominant species of ungrazed plot (UG), overgrazed plot (OG), and restored grazed plot (RG) were determined in the Xilin River Basin, Inner Mongolia, China. Both heavily grazing and restoration significantly affected the composition of different species and life forms. Leymus chinensis, Stipa grandis, and Cleistogenes polyphylla, three dominant perennial grasses in UG plot, contributed 58.9 % aboveground biomass to that of whole community, and showed higher net photosynthetic rate (P _N), transpiration rate (E), and intrinsic water-use efficiency (WUE). In OG plot, relative biomass of L. chinensis and S. grandis significantly decreased, while relative biomass of three shrubs/sub-shrubs, Caragana microphylla, Artemisia frigida, and Kochia prostrata, obviously increased. Heavy grazing significantly decreased P _N, E, and WUE of L. chinensis and S. grandis, while shrubs/sub-shrubs showed significantly higher photosynthetic activity and WUE than the grasses. After 18-year restoration, photosynthetic activities of L. chinensis and S. grandis were significantly higher than those in the OG plot. The proportion of L. chinensis, S. grandis, and C. microphylla significantly increased, and relative biomass of C. polyphylla, A. frigida, and K. prostrata markedly declined in RG plot. We found close relationships between physiological properties of species and their competitive advantage in different land use types. Higher photosynthetic capability means more contribution to total biomass. The variations in physiological characteristics of plants could partly explain the changes in species composition during degrading and restoring processes of Inner Mongolia typical steppes.     

Water relations,chlorophyll <Emphasis Type="Italic">a</Emphasis> fluorescence,and contents of saccharides in tree species of a tropical forest in response to flood

We studied the seasonal changes in water relations, chlorophyll a fluorescence, and leaf saccharide contents of the tropical flood-tolerant trees Acosmium nitens, Campsiandra laurifolia, Eschweilera tenuifolia, Symmeria paniculata, and Psidium ovatifolium. Xylem water potential increased with flooding to a larger extent than leaf sap osmotic potential in all the species, and soluble sugars contributed up to 66 % of osmotic potential at maximum flooding. Starch was accumulated in leaves. Maximum quantum yield of photosystem 2 decreased in emerged leaves, values being always higher than 0.76. Daily maximum net photosynthetic rate and leaf conductance decreased in all the species. This reduction was associated in all the species but S. paniculata with the absence of a compensatory increase in non-photochemical quenching.This research was financially supported by CONICIT grant S1-96001345. E. Rengifo was funded by a CONICIT scholarship.     

Effect of ectomycorrhizal infection on growth and photosynthetic characteristics of <Emphasis Type="Italic">Pinus densiflora</Emphasis> seedlings grown under elevated CO<Subscript>2</Subscript> concentrations

The effect of ectomycorrhizal Pisolithus tinctorius (Pt) infection was studied on the growth and photosynthetic characteristics of Pinus densiflora seedlings grown at ambient (360 µmol mol⁻¹, AC) and elevated (720 µmol mol⁻¹, EC) CO₂ concentrations. After 18 weeks, Pt inoculation had led to significantly increased dry mass and stem diameter of P. densiflora at both CO₂ concentrations, relative to non-inoculated seedlings. Moreover, EC significantly increased the ectomycorrhizal development. The phosphate content in needles inoculated with Pt was about three times higher than without inoculation at both CO₂ concentrations. The PAR saturated net photosynthetic rates (P _sat) of P. densiflora inoculated with Pt were clearly higher than for control seedlings at both CO₂ concentrations, and the maximum net photosynthetic rate (P _N) at saturated CO₂ concentration (P _max) was higher than in controls. Moreover, the carboxylation efficiency (CE) and RuBP regeneration rate of the P _N/C _i curve for P. densiflora inoculated with Pt were significantly higher than for non-inoculated seedlings at both CO₂ concentrations, especially at EC. The water use efficiency (WUE) of seedlings inoculated with Pt grown at EC was significantly raised. Allocation of photosynthates to roots was greater in Pt inoculated pine seedlings, because of the enhanced activity of ectomycorrhiza associated with seedlings at EC. Moreover, P _N of non-inoculated seedlings grown for 18 weeks at EC tended to be down regulated; in contrast, Pt inoculated seedlings showed no down-regulation at EC. The activity of ectomycorrhiza may therefore be enhanced physiological function related to water and phosphate absorption in P. densiflora seedlings at EC.This study was partly sponsored by the Ministry of Education, Sport, Culture, Science and Technology of Japan (RR2002, Basic Research B and Sprout study).     

Leaf development and photosynthetic properties of three tropical tree species with delayed greening

Leaf developmental patterns were characterized for three tropical tree species with delayed greening. Changes in the pigment contents, photosynthetic capacity, stomata development, photosystem 2 efficiency, rate of energy dissipation, and the activity of partial protective enzymes were followed in developing leaves in an attempt to elucidate the relative importance of various photoprotective mechanisms during leaf ontogeny. Big leaves of Anthocephalus chinensis, a fast-growing light demanding species, expanded following an exponential pattern, while relatively small leaves of two shade-tolerant species Litsea pierrei and Litsea dilleniifolia followed a sigmoidal pattern. The juvenile leaves of A. chinensis and L. pierrei contained anthocyanin located below the upper epidermis, while L. dilleniifolia did not contain anthocyanin. Leaves of A. chinensis required about 12 d for full leaf expansion (FLE) and photosynthetic development was delayed 4 d, while L. pierrei and L. dilleniifolia required 18 or 25 d for FLE and photosynthetic development was delayed 10 or 15 d, respectively. During the leaf development the increase in maximum net photosynthetic rate was significantly related to changes in stomatal conductance and the leaf maturation period was positively related to the steady-state leaf dry mass per area for the three studied species. Dark respiration rate of leaves at developing stages was greater, and pre-dawn initial photochemical efficiency was lower than that of mature leaves. Young leaves displayed greater energy dissipation than mature leaves, but nevertheless, the diurnal photoinhibition of young L. dilleniifolia leaves was higher than that of mature leaves. The young red leaves of A. chinensis and L. pierrei with high anthocyanin contents and similar diurnal photoinhibition contained more protective enzymes (superoxide dismutase, ascorbate peroxidase) than mature leaves. Consequently, red leaves may have higher antioxidant ability.