Exploring the proteome of an echinoderm nervous system: 2-DE of the sea star radial nerve cord and the synaptosomal membranes subproteome

We describe the first proteomic characterization of the radial nerve cord (RNC) of an echinoderm, the sea star Marthasterias glacialis. The combination of 2-DE with MS (MALDI-TOF/TOF) resulted in the identification of 286 proteins in the RNC. Additionally, 158 proteins were identified in the synaptosomal membranes enriched fraction after 1-DE separation. The 2-DE RNC reference map is available via the WORLD-2DPAGE Portal (http://www.expasy.ch/world-2dpage/) along with the associated protein identification data which are also available in the PRIDE database. The identified proteins constitute the first high-throughput evidence that seems to indicate that echinoderms nervous transmission relies primarily on chemical synapses which is similar to the synaptic activity in adult mammal's spinal cord. Furthermore, several homologous proteins known to participate in the regeneration events of other organisms were also identified, and thus can be used as targets for future studies aiming to understand the poorly uncharacterized regeneration capability of echinoderms. This "echinoderm missing link" is also a contribution to unravel the mystery of deuterostomian CNS evolution.     

Polarized Dishevelled dissolution and reassembly drives embryonic axis specification in sea star oocytes

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Studies on the accumulation of phenolic acids and flavonoids in different in vitro culture systems of Schisandra chinensis (Turcz.) Baill. using a DAD-HPLC method

Different in vitro culture systems of the East-Asian origin medicinal plant species − Schisandra chinensis, were tested in order to investigate their potential for the accumulation of two groups of phenolic compounds. In vitro cultures were maintained on the Murashige and Skoog (MS) medium supplemented with 3 mg/l BA and 1 mg/l NAA in an agar system (30- and 60-day growth cycles), and also in two different liquid systems: stationary and agitated. Stationary liquid cultures were grown in batch (30- and 60-day growth cycles) and fed-batch modes. Of the twenty compounds, seven free phenolic acids and of the eleven compounds, five flavonoids were quantified in methanolic extracts from lyophilized biomass and in the growth media using the RP-HPLC-DAD method. For comparison purposes, phytochemical analyses of leaf and fruit extracts from the parent plant were also conducted. The estimated compounds were not detected in the growth media. The highest total amounts of phenolic acids (71.48 mg/100 g DW) and flavonoids (29.36 mg/100 g DW) were found in extracts from the biomass of agar cultures harvested after 30 days of cultivation. The main metabolites in all the tested systems were: protocatechuic acid (max. 35.69 mg/100 g DW), chlorogenic acid (max. 13.05 mg/100 g DW), and quercitrin (max. 27.43 mg/100 g DW).     

Testing claims of gene conversion between multigene family members: examples from echinoderm actin genes

Molecular genetics studies often infer the occurrence of gene conversion events based on simple sequence similarity observations that do not include any statistical analyses. I show that the statistical significance of two previously proposed gene conversion events can easily be tested and point out that a variety of methods are available to perform gene conversion analyses. Received: 6 June 2001 / Accepted: 22 June 2001     

Effects of sponge and barnacle encrustation on survival of the scallop <Emphasis Type="Italic">Chlamys hastata</Emphasis>

The scallop Chlamys hastata frequently carries epibionts such as sponges and barnacles on its shells. Although the scallop-sponge relationship has been characterized as a mutualism, little is known about the scallop-barnacle relationship. This study investigated the effects of sponge and barnacle encrustation on the ability of C. hastata to avoid predation by the sea star Pycnopodia helianthoides. In feeding trials, P. helianthoides caught and consumed significantly more barnacle-encrusted scallops (7.7 ± 0.8 out of 20 scallops) than scallops encrusted by either of the sponges Myxilla incrustans (4.1 ± 0.9) or Mycale adhaerens (3.0 ± 0.5). Epibiont-free scallops (5.7 ± 0.5) formed an intermediate treatment between barnacle-encrusted and sponge-encrusted scallops. Possible mechanisms by which the sponges protected the scallops were investigated in two ways: two feeding trials were videotaped to allow qualitative analysis of sea star and scallop behavior and sea star feeding responses to scallop and sponge homogenates were determined to investigate if sea stars accept scallops and sponges as prey. Sea stars displayed positive feeding responses to scallop puree 97.5% ± 1.6 of the time while only displaying positive responses to Mycale adhaerens homogenate 4.4% ± 2.0 of the time and to Myxilla incrustans homogenate 4.4% ± 2.9 of the time. The videotaped feeding trials indicated that interference with tube feet adhesion by the sponge deterred predation. Observations of both sea stars that were videotaped showed that neither avoided trying to capture sponge-encrusted scallops, and at no time was a captured scallop willingly released by the sea stars. Thus, it appears that sponges provide tactile-mechanical protection and possibly chemical or tactile camouflage in this predator/prey relationship. Finally, the effects of sponge encrustation on barnacle settlement were determined. Field experiments showed that barnacle larvae settled more frequently on epibiont-free scallops than on those with either of the two sponges, potentially protecting the scallops from an epibiont that increases the scallop’s susceptibility to predation. Handling editor: K. Martens     

Repellency of two terpenoid compounds isolated from <Emphasis Type="Italic">Callicarpa americana</Emphasis> (Lamiaceae) against <Emphasis Type="Italic">Ixodes scapularis</Emphasis> and <Emphasis Type="Italic">Amblyomma americanum</Emphasis> ticks

Callicarpenal (13, 14, 15, 16-tetranor-3-cleroden-12-al) and intermedeol [(4S,5S,7R,10S)-eudesm-11-en-4-ol], isolated from American beautyberry, Callicarpa americana (Lamiaceae), were evaluated in laboratory bioassays for repellent activity against host-seeking nymphs of the blacklegged tick, Ixodes scapularis, and lone star tick, Amblyomma americanum. A strip of organdy cloth treated with test solution was doubly wrapped (treatment on outer layer) around the middle phalanx of a forefinger and ticks released on the fingertip. Callicarpenal and intermedeol, at 155 nmole/cm² cloth repelled 98 and 96% of I. scapularis nymphs, respectively. Dose response tests with I. scapularis nymphs showed no difference in repellency among callicarpenal, intermedeol and Deet (N,N-diethyl-3-methylbenzamide), however, SS220 ((1S,2′S)-2-methylpiperidinyl-3-cyclohexene-1-carboxamide) was significantly more repellent than the other compounds. Callicarpenal, at 155 nmole/cm² cloth, repelled 100 and 53.3% of I. scapularis nymphs at 3 and 4 h, respectively, after the cloth was treated, whereas intermedeol repelled 72.5% of I. scapularis nymphs 3 h after treatment. In comparison with the results obtained with I. scapularis, callicarpenal, intermedeol, Deet and SS220 were less effective against A. americanum. Only intermedeol and SS220 repelled significantly more A. americanum than ethanol controls at 155 nmole compound/cm² cloth. At 1,240 nmole/cm² cloth, callicarpenal and intermedeol repelled 20 and 40% of A. americanum nymphs.     

miRNA–miRNA interaction implicates for potential mutual regulatory pattern

Background

Natural or endogenous sense/antisense miRNAs, located on sense and antisense strands in the same genomic region, respectively, are detected recently. However, little is known about these miRNA pairs, especially for their distributions in different animal species. We herein present systematic analysis of them in human, mouse and rat miRNAs, and their expression patterns based on deep sequencing datasets.

Methods and results

The phenomenon of miRNA–miRNA interaction could be detected in different animal species. The common miRNAs pairs were found across species. These miRNA pairs could form miRNA:miRNA duplex with complete complementary structure, and were prone to be located on specific chromosomes. They might be homologous miRNA genes (especially in human), or clustered in a gene cluster (especially in rat), or simultaneously detected in different genomic regions due to multicopy pre-miRNAs. Remarkably, some miRNA pairs, located in different genomic regions, also showed complementarity as well as endogenous sense/antisense miRNAs. Based on published deep sequencing datasets, one member of miRNA pairs always was abundantly expressed, whereas another was quite rare. Rare common target mRNAs of these miRNA pairs were predicted.

Conclusions

Interaction between miRNAs and significant expression divergence implied complex potential mutual regulatory pattern in the miRNA world. The study would enrich miRNA regulatory network.     

厚朴叶片衰老过程中SOD对叶绿素、蛋白质及质膜透性效应的定量研究

本文应用弹性分析和边际分析数学方法对离体厚朴叶片衰老中的SOD活性对叶绿素、蛋白质及质膜透性效应进行了研究。结果表明:厚朴叶片衰老中,SOD活性对叶绿素或蛋白质或质膜透性的边际量和弹性系数的效应,是随着外源营养条件和温度变化而变化的。SOD活性与叶绿素及蛋白质的弹性系数呈显著正相关,SOD对它们的效应处于递增阶段,而SOD活性与质膜透性的弹性系数呈显著负相关,其效应处于负效应阶段。     

Origin and development of the germ line in sea stars

This review summarizes and integrates our current understanding of how sea stars make gametes. Although little is known of the mechanism of germ line formation in these animals, recent results point to specific cells and to cohorts of molecules in the embryos and larvae that may lay the ground work for future research efforts. A coelomic outpocketing forms in the posterior of the gut in larvae, referred to as the posterior enterocoel (PE), that when removed, significantly reduces the number of germ cell later in larval growth. This same PE structure also selectively accumulates several germ‐line associated factors—vasa, nanos, piwi—and excludes factors involved in somatic cell fate. Since its formation is relatively late in development, these germ cells may form by inductive mechanisms. When integrated into the morphological observations of germ cells and gonad development in larvae, juveniles, and adults, the field of germ line determination appears to have a good model system to study inductive germ line determination to complement the recent work on the molecular mechanisms in mice. We hope this review will also guide investigators interested in germ line determination and regulation of the germ line into how these animals can help in this research field. The review is not intended to be comprehensive—sea star reproduction has been studied for over 100 years and many reviews are comprehensive in their coverage of, for example, seasonal growth of the gonads in response to light, nutrient, and temperature. Rather the intent of this review is to help the reader focus on new experimental results attached to the historical underpinnings of how the germ cell functions in sea stars with particular emphasis to clarify the important areas of priority for future research. genesis 52:367–377, 2014. © 2014 Wiley Periodicals, Inc.