The effects of fire on ant communities in north-western Patagonia: the importance of habitat structure and regional context

Abstract. We investigated the effects of recent fires on the native ant communities in two habitats of north-west Patagonia that differ in vegetation structural complexity. Using bait traps, we sampled ants in replicated scrub and steppe areas including paired burned and unburned sites. Fires significantly reduced plant cover and ant diversity only in scrub sites. The drop in diversity was due to (a) a reduction in the abundance of rare species associated with woody vegetation, and (b) an increase in the abundance of the dominant species, which thrive in more xeric microclimatic conditions. Consequently, ant assemblage structure of burned scrub approaches that of steppe sites. Our findings suggest that the effects of disturbances on ant assemblages depends both on habitat characteristics, which in turn determine the extent of the changes induced by the disturbance, and on the regional context of the ant fauna, which in turn determines the ability of the ants to deal with the post-disturbance conditions.     

A method for generating user-defined circular single-stranded DNA from plasmid DNA using Golden Gate intramolecular ligation

Construction of user-defined long circular single stranded DNA (cssDNA) and linear single stranded DNA (lssDNA) is important for various biotechnological applications. Many current methods for synthesis of these ssDNA molecules do not scale to multikilobase constructs. Here we present a robust methodology for generating user-defined cssDNA employing Golden Gate assembly, a nickase, and exonuclease degradation. Our technique is demonstrated for three plasmids with insert sizes ranging from 2.1 to 3.4 kb, requires no specialized equipment, and can be accomplished in 5 h with a yield of 33%–43% of the theoretical. To produce lssDNA, we evaluated different CRISPR-Cas9 cleavage conditions and reported a 52 ± 8% cleavage efficiency of cssDNA. Thus, our current method does not compete with existing protocols for lssDNA generation. Nevertheless, our protocol can make long, user-defined cssDNA readily available to biotechnology researchers.     

Seed bank,seed size and dispersal in moisture gradients of temporary pools in Southern France

Plants reduce risk of extinction due to unpredictable rainfall by soil seed banks, dispersal or large seeds. However, seed size also increases independently in dry habitats, and since seed size is in a trade-off with seed number, size of seed banks is expected to increase in moister habitats. Therefore, we wanted to test if seed abundance in soil increases in wet habitats, if seed size increases in dry habitats, and if spread of seeds along the gradient is higher for plants of intermediate habitats in local moisture gradients.We studied 15 temporary pools in three biogeographically separated wetlands in Southern France. For each pool we studied five different moisture levels, totalling 75 local plant communities. We quantified soil seed bank by the seedling emergence method, seed size and an index of spatial spread of seeds in the soil for every species. We also quantified water levels for each plot.We found increasing abundance of seeds in the soil with increasing water levels but lower seed size and higher spread at intermediate water levels. When we controlled for niche position, we found no trade-off between seed size, spread and abundance in the soil seed bank.Type and importance of risk reduction strategies thus appeared to be strongly driven by the plant species’ moisture niche and the spatial arrangement of water levels.     

Succulent plants on arid inselbergs

Succulent plants in arid areas are believed to be often associated with high altitudes, except where they form the dominant, zonal vegetation such as in the Succulent Karoo Biome of southern Africa. To test this hypothesis the contribution of perennial succulents to inselberg floras was investigated on twenty-two isolated mountains (inselbergs) at four study sites (Etendeka–Barab: 19°34′ S/13°42′ E; Spitzkoppe: 21°49′ S/15°09′ E; Namibrand: 25°17′ S/15°47′ E; and Sperrgebiet: 27°43′ S/16°04′ E) along a nearly 1000 km bioclimatic gradient in the Namib Desert and adjacent areas, from the Succulent Karoo in the south to the northern Namib, and along altitude gradients.The contribution of succulents to the flora clearly increased with altitude at the two central study sites, thus showing a hump-shaped trend along the bioclimatic gradient. No such correlation was found at the northern and southern end of the bioclimatic gradient. The surrounding (rocky) lowlands likely resulted in a more even distribution of succulents throughout the landscape in the north, while the position in the heartland of the succulent flora in southern Africa at the southern-most site, levelled out potential patterns related to altitude. Nevertheless, even here, a fair number of succulents restricted to mountain habitats occur. This is the case in all other study sites, where succulents restricted to mountain habitats are always present.Some perennial succulents, such as Aridaria noctiflora, Euphorbia gummifera and Tetragonia reduplicata indicate an upward movement with increasing distance from the Succulent Karoo, by growing on plains and lowlands in the Succulent Karoo, but only on inselbergs at study sites north of the Succulent Karoo.Many of the mountain specialist succulents are sought after by plant collectors, such as species of Conophytum, Crassula and Lithops. Protecting and monitoring vulnerable populations as well as growing these in horticulture may help to alleviate the pressure on some of these rare species in nature. Preserving genetic material of isolated populations from mountain tops ex situ is another important conservation measure, and particularly important in the view of anticipated climatic change.     

A new method to measure carbon isotope composition of CO2 respired by trees: stem CO2 equilibration

1.  Applying Keeling plot techniques to derive δ¹³C of respiratory input in a closed non-equilibrated chamber can lead to large errors because steady-state diffusion rules are violated in a non-steady-state environment. To avoid these errors, respiratory δ¹³C can be derived using equilibrated closed chambers.
2.  We introduce a new method to obtain stem respired CO₂δ¹³C (δ_{st - r}) with closed equilibrated stem chambers (E-SC). We present a theoretical model describing the equilibration process, test the model against field data and find excellent agreement. The method is further tested by comparing it with closed non-equilibrated stem chambers (NE-SC); we found no difference between these methods.
3.  Our theoretical model to describe CO₂ diffusion from the respiratory pool into the chamber and the equation to derive the δ¹³C of the efflux are general. They could be applied to other ecosystem components (e.g. soils).
4.  Our method is easy to implement, cost effective, minimizes sources of error and allows for rigorous leak detection. One major limitation is its inability to detect rapid change; the equilibration process requires 15 ± 2 h. A second limitation is that it cannot be used for species that produce abundant pitch at sites of stem wounding (e.g. Pseudotsuga menziesii ).
5.  Investigating δ¹³C of CO₂ respired by different ecosystem components is necessary to interpret δ¹³C of ecosystem respiration. This parameter has major implications with respect to global carbon cycle science.     

Enhanced CO2 uptake is marginally offset by altered fluxes of non-CO2 greenhouse gases in global forests and grasslands under N deposition

Despite the increasing impact of atmospheric nitrogen (N) deposition on terrestrial greenhouse gas (GHG) budget, through driving both the net atmospheric CO₂ exchange and the emission or uptake of non-CO₂ GHGs (CH₄ and N₂O), few studies have assessed the climatic impact of forests and grasslands under N deposition globally based on different bottom-up approaches. Here, we quantify the effects of N deposition on biomass C increment, soil organic C (SOC), CH₄ and N₂O fluxes and, ultimately, the net ecosystem GHG balance of forests and grasslands using a global comprehensive dataset. We showed that N addition significantly increased plant C uptake (net primary production) in forests and grasslands, to a larger extent for the aboveground C (aboveground net primary production), whereas it only caused a small or insignificant enhancement of SOC pool in both upland systems. Nitrogen addition had no significant effect on soil heterotrophic respiration (R_H) in both forests and grasslands, while a significant N-induced increase in soil CO₂ fluxes (R_S, soil respiration) was observed in grasslands. Nitrogen addition significantly stimulated soil N₂O fluxes in forests (76%), to a larger extent in grasslands (87%), but showed a consistent trend to decrease soil uptake of CH₄, suggesting a declined sink capacity of forests and grasslands for atmospheric CH₄ under N enrichment. Overall, the net GHG balance estimated by the net ecosystem production-based method (forest, 1.28 Pg CO₂-eq year⁻¹ vs. grassland, 0.58 Pg CO₂-eq year⁻¹) was greater than those estimated using the SOC-based method (forest, 0.32 Pg CO₂-eq year⁻¹ vs. grassland, 0.18 Pg CO₂-eq year⁻¹) caused by N addition. Our findings revealed that the enhanced soil C sequestration by N addition in global forests and grasslands could be only marginally offset (1.5%–4.8%) by the combined effects of its stimulation of N₂O emissions together with the reduced soil uptake of CH₄.     

Occurrence of an active regulatory mechanism of protein synthesis during starvation and refeeding in Bombyx mori fat body.

The origin of the amino acids which participate in protein synthesis at the recovery from starvation have been determined in the fat body from Bombyx mori larvae. Endogeneous amino acids have been labelled with [3H] leucine and ingested ones with [14C] leucine, allowing their discrimination in the organism. 22 minutes after refeeding, proteosynthetic activity of the fat body, estimated by the polysome level, is increased 2.5 fold. Endogeneous leucine represents more than 90 p. cent of the leucine present in nascent polypeptides. Free leucine pools of the fat body and of hemolymph increase, mainly through the release of endogeneous leucine. It is therefore concluded that refeeding with amino acids induces the production of a signal or critical factor, responsible for the increase in proteosynthetic activity in the fat body.