3-D modelling of chloroplast structure under (Mg) magnesium ion treatment. Relationship between thylakoid membrane arrangement and stacking

We performed for the first time three-dimensional (3D) modelling of the entire chloroplast structure. Stacks of optical slices obtained by confocal laser scanning microscope (CLSM) provided a basis for construction of 3D images of individual chloroplasts. We selected pea (Pisum sativum) and bean (Phaseolus vulgaris) chloroplasts since we found that they differ in thylakoid organization. Pea chloroplasts contain large distinctly separated appressed domains while less distinguished appressed regions are present in bean chloroplasts. Different magnesium ion treatments were used to study thylakoid membrane stacking and arrangement. In pea chloroplasts, as demonstrated by 3D modelling, the increase of magnesium ion concentration changed the degree of membrane appression from wrinkled continuous surface to many distinguished stacked areas and significant increase of the inter-grana area. On the other hand 3D models of bean chloroplasts exhibited similar but less pronounced tendencies towards formation of appressed regions. Additionally, we studied arrangements of thylakoid membranes and chlorophyll-protein complexes by various spectroscopic methods, Fourier-transform infrared spectroscopy (FTIR) among others. Based on microscopic and spectroscopic data we suggested that the range of chloroplast structure alterations under magnesium ions treatment is a consequence of the arrangement of supercomplexes. Moreover, we showed that stacking processes always affect the structural changes of chloroplast as a whole.     

Mimicking SP-C palmitoylation on a peptoid-based SP-B analogue markedly improves surface activity

Hydrophobic lung surfactant proteins B and C (SP-B and SP-C) are critical for normal respiration in vertebrates, and each comprises specific structural attributes that enable the surface-tension-reducing ability of the lipid-protein mixture in lung surfactant. The difficulty in obtaining pure SP-B and SP-C on a large scale has hindered efforts to develop a non-animal-derived surfactant replacement therapy for respiratory distress. Although peptide-based SP-C mimics exhibit similar activity to the natural protein, helical peptide-based mimics of SP-B benefit from dimeric structures. To determine if in vitro surface activity improvements in a mixed lipid film could be garnered without creating a dimerized structural motif, a helical and cationic peptoid-based SP-B mimic was modified by SP-C-like N-terminus alkylation with octadecylamine. “Hybridized” mono- and dialkylated peptoids significantly decreased the maximum surface tension of the lipid film during cycling on the pulsating bubble surfactometer relative to the unalkylated variant. Peptoids were localized in the fluid phase of giant unilamellar vesicle lipid bilayers, as has been described for SP-B and SP-C. Using Langmuir-Wilhelmy surface balance epifluorescence imaging (FM) and atomic force microscopy (AFM), only lipid-alkylated peptoid films revealed micro- and nanostructures closely resembling films containing SP-B. AFM images of lipid-alkylated peptoid films showed gel condensed-phase domains surrounded by a distinct phase containing “nanosilo” structures believed to enhance re-spreading of submonolayer material. N-terminus alkylation may be a simple, effective method for increasing lipid affinity and surface activity of single-helix SP-B mimics.     

HOST PLANT PREFERENCES OF BEMISIA TABACI GENNADIUS

Abstract The preferences of Bemisia tabaci Gennadius for five host plants: poinsettia, tomato, cabbage, sweet potato and flowering Chinese cabbage, was tested using a Y-tube olfactometer and a desiccator in the laboratory. The results show that B. tabaci adults were attracted by the odors of the five plants. The order of preference was poinsettia > flowering Chinese cabbage > sweet potato > cabbage > tomato. Preference was extremely significant between poinsettia and the other four plants, and between flowering Chinese cabbage, cabbage and tomato. There was no significant difference in preference for flowering Chinese cabbage and sweet potato, sweet potato, cabbage and tomato or between cabbage and tomato.     

Ecological and genetic associations across a Heliconius hybrid zone

Differences in habitat use can bridge early and late stages of speciation by initiating assortative mating. Heliconius colour pattern races might select habitats over which each pattern confers a relative fitness advantage because signal efficacy of wing patterns can vary by environment. Thus habitat preferences could serve to promote the evolution of mimetic colour patterns for mate choice. Here I compare colour pattern genotype and phenotype frequencies to environmental variation across the H. erato hydara x H. erato erato hybrid zone in French Guiana to determine whether races exhibit habitat preferences. I found that genotype and phenotype frequencies correspond to differences in land cover moreso than to other environmental factors. Temporal shifts in colour pattern genotypes, phenotypes and land cover also were associated at individual sample sites, which further suggests that H. erato races differ in habitat use and that habitat preferences may promote speciation among Heliconius butterflies.     

Estimating economic values of vegetation restoration with choice experiments: a case study of an endangered species in Lake Kasumigaura, Japan

As the pace of ecosystem restoration increases, more attention has been directed towards understanding public preferences for ecosystem restoration projects. This paper utilizes a choice experiments technique to evaluate the restoration project of an endangered species, Nymphoides peltata (known locally as asaza) in Lake Kasumigaura, Japan. The restoration project evaluated in this paper consists of two attributes: an extinction risk and a lakeshore ecosystem. First, we observe a positive willingness-to-pay for the vegetation restoration project: the mean willingness-to-pay for restoring the endangered specie and avoiding extinction was about JPY6,800 and the mean willingness-to-pay for restoring the covering area to the ideal condition that the species originally inhabited in 1996 was about JPY1,600. Second, we clarify what kinds of individual characteristics affect preferences for restoration projects compared with preferences for the status quo. The results show that respondents who have strong environmental attitudes, visit experience, high income, and are female are more likely to prefer restoration projects to the status quo. Third, we investigate whether knowledge and comprehension of ecological information have any influence on respondents’ value formations. We find that respondents’ comprehension of ecological information is positively related to their willingness-to-pay for the avoidable level of extinction risk attribute, while respondents’ knowledge of ecological terms has no effect. Overall, our findings suggest that the public strongly desires the avoidance of extinction of endangered species, and indicates that researchers should be careful about how ecological information is given.

Habitat Use and Structural Preferences of Captive Western Lowland Gorillas (Gorilla gorilla gorilla(: Effects of Environmental and Social Variables

Exhibit naturalism has become the architectural standard for new zoo exhibits, yet our scientific understanding of how animals interact with naturalistic environments is very limited. Given the expense incurred in building new exhibits, it is essential that more information on animal-environment interactions be obtained and that it be incorporated at the outset into exhibit designs. We documented four years of habitat use and structural preferences of western lowland gorillas at Zoo Atlanta. We found that quality of space rather than quantity of space was important, as subjects spent 50% of their time in <15% of the exhibits. Subjects showed strong preferences for the areas near structures, particularly the holding building, and spent significantly less time away from structures than expected. Temperature interacted with structural preferences in that the subjects spent more time away from structures when temperatures were cold and more time near them when temperatures were hot. There was no difference in habitat use and structural preferences due to age, sex, and rearing history, but social factors appear to play a role. Our results are similar to those found a decade earlier in the same population and to other studies of space use in apes but are the first to include significant temperature effects. Additionally, they suggest that managers and designers need to take into account factors such as quality of space, attractiveness of the holding building, and the interaction of structural preferences with variables such as temperature and social factors when designing exhibits.     

Potential bias in NMR relaxation data introduced by peak intensity analysis and curve fitting methods

We present an evaluation of the accuracy and precision of relaxation rates calculated using a variety of methods, applied to data sets obtained for several very different protein systems. We show that common methods of data evaluation, such as the determination of peak heights and peak volumes, may be subject to bias, giving incorrect values for quantities such as R₁ and R₂. For example, one common method of peak-height determination, using a search routine to obtain the peak-height maximum in successive spectra, may be a source of significant systematic error in the relaxation rate. The alternative use of peak volumes or of a fixed coordinate position for the peak height in successive spectra gives more accurate results, particularly in cases where the signal/noise is low, but these methods have inherent problems of their own. For example, volumes are difficult to quantitate for overlapped peaks. We show that with any method of sampling the peak intensity, the choice of a 2- or 3-parameter equation to fit the exponential relaxation decay curves can dramatically affect both the accuracy and precision of the calculated relaxation rates. In general, a 2-parameter fit of relaxation decay curves is preferable. However, for very low intensity peaks a 3 parameter fit may be more appropriate.     

Fluorescence-based biosensing of zinc using carbonic anhydrase

Measurement of free zinc levels and imaging of zinc fluxes remains technically difficult due to low levels and the presence of interfering cations such as Mg and Ca. We have developed a series of fluorescent zinc indicators based on the superb sensitivity and selectivity of a protein, human apo-carbonic anhydrase II, for Zn(II). These indicators transduce the level of free zinc as changes in intensity, wavelength ratio, lifetime, and/or anisotropy; the latter three approaches permit quantitative imaging of zinc levels in the microscope. A unique attribute of sensors incorporating biological macromolecules as transducers is their capability for modification by site-directed mutagenesis. Thus we have produced variants of carbonic anhydrase with improved affinity for zinc, altered selectivity, and enhanced binding kinetics, all of which are difficult to modify in small molecule indicators.     

Stable carbon and nitrogen ratios in the sand smelt from a Mediterranean coastal area: feeding habits and effect of season and size

Enriched δ¹³C values (annual average – 11.2‰) suggest that in the study site (Stagnone di Marsala, Italy) the sand smelt Atherina boyeri exploited benthic prey throughout the year. In particular, Mysidacea and Isopoda seemed to dominate the diet. Stomach content data from the literature was in partial agreement with the present isotopic analysis suggesting that, while Mysidacea and Isopoda are exploited by A. boyeri , Copepoda Harpacticoida and Amphipoda are the dominant food items of the sand smelt diet. Several hypotheses are proposed to explain such partially different results from the two techniques. Both season and size influenced the δ¹³C and δ¹⁵N values of A. boyeri . Although throughout the sampling year, A. boyeri showed very enriched δ¹³C and δ¹⁵N values consistent with a diet based on benthic resources, it showed significant seasonal differences in both nitrogen and carbon isotope ratios. Such a finding suggests that the food preferences of A. boyeri undergo small seasonal differences, probably as a consequence of prey availability. Size also affected the isotopic composition of the sand-smelt indicating that this species shows ontogenetic diet shifts in the study site. Compared with other Mediterranean trophic data of the sand smelt these results substantiate the great adaptability of A. boyeri to the local environmental resources and its trophic plasticity.     

Habitat selection by the small dasyurid Ningaui yvonneae (Marsupialia: Dasyuridae) in South Australia

This study investigated the habitat preferences of Ningaui yvonneae, a small, nocturnal insectivorous marsupial of the semi‐arid regions of southern Australia. Habitat composition was assessed at both the local (trapping grid) and trap scale. Multiple linear regression revealed a significant positive relationship between captures of N. yvonneae and the abundance of hummock grass (Triodia irritans) at the local scale. At the trap scale, the interaction between Triodia irritans and shrubs was found to be significant. This is thought to reflect the importance of the availability of cover to ningauis. Triodia was an essential component of that, probably because it affords greater protection from predators. This study provides quantitative habitat data that supports the contention of other studies that N. yvonneae has a strong positive association with Triodia spp.