Comparative seedling ecology of eight North American spruce (Picea) species in relation to their geographic ranges

BACKGROUND AND AIMS: Allowing for dispersal limitation, a species' geographic distribution should reflect its environmental requirements. Comparisons among closely related species should reveal adaptive differentiation in species characteristics that are consistent with their differences in geographic distribution. This expectation was tested by comparing characteristics of seedlings of spruce species in relation to environmental factors representative of their current natural ranges. METHODS: Seedlings were grown from a total of 34 populations representing eight North American spruce (Picea) species in a controlled environment chamber for 140 d. Traits related to the potential of seedling establishment, including tolerance to stress events (high temperature, desiccation) were evaluated. Correlations were sought between these characteristics and modal values of latitude, aridity and continentality in the geographic range of each species. KEY RESULTS: Many seedling traits changed significantly in response to stress events, but only the response of chlorophyll concentration differed significantly among species. Components of seedling growth were good correlates of species distribution. Seedling relative growth rate (RGR) and specific leaf area (SLA) were positively correlated with latitude, and leaf weight ratio (LWR) negatively correlated with aridity. Seed mass was negatively correlated with latitude. CONCLUSIONS: Relationships found between seedling traits and geographical variation in environmental conditions suggest that factors such as temperature regime, water availability and perhaps litter depth affect species range in North American spruces. Seedling characteristics appear to be elements in a reasonably distinct environmental niche for each spruce species at the continental scale.     

Structural and functional characterization of mitochondrial EndoG, a sugar non-specific nuclease which plays an important role during apoptosis

Combining sequence analysis, structure prediction, and site-directed mutagenesis, we have investigated the mechanism of catalysis and substrate binding by the apoptotic mitochondrial nuclease EndoG, which belongs to the large family of DNA/RNA non-specific betabetaalpha-Me-finger nucleases. Catalysis of phosphodiester bond cleavage involves several highly conserved amino acid residues, namely His143, Asn174, and Glu182 required for water activation and metal ion binding, as well as Arg141 required for proper substrate binding and positioning, respectively. These results indicate that EndoG basically follows a similar mechanism as the Serratia nuclease, the best studied representative of the family of DNA/RNA non-specific nucleases, but that differences are observed for transition state stabilisation. In addition, we have identified two putative DNA/RNA binding residues of bovine EndoG, Arg135 and Arg186, strictly conserved only among mammalian members of the nuclease family, suggesting a similar mode of binding to single and double-stranded nucleic acid substrates by these enzymes. Finally, we demonstrate by ectopic expression of active and inactive variants of bovine EndoG in HeLa and CV1-cells that extramitochondrial active EndoG by itself induces cell death, whereas expression of an enzymatically inactive variant does not.     

Simultaneous detection of DNA synthesis, activation and cytokine secretion in collagen II (250-270)-activated T lymphocytes by flow cytometry

T cell activation and secretion of cytokines from activated peripheral blood mononuclear cells (PBMC) in culture have traditionally been measured by 3H-thymidine incorporation for assessment of cell proliferation. However, this method has many disadvantages that limit its usage in analyzing antigen-specific T responses, because of the low specific frequencies of the cells. Collagen II (250-270) may be an important autoantigen involved in the pathology of rheumatoid arthritis (RA). To further study the specific T cells response to CII 250-270, we developed an improved method for measuring lymphocyte proliferation and activation, and intracellular cytokine production, by flow cytometry at the single cell level. BrdU, an analog of thymidine, was incorporated into cellular DNA as a marker of individual cell proliferation. The cells were fixed and permeabilized, and a monoclonal antibody against BrdU conjugated with a fluorescent dye was used to measure BrdU incorporation. A Tris staining technique for the simultaneous determination of cell surface activation markers (CD69 or CD25) and intracellular cytokine production was also used and the parameters were assessed by 3-color flow cytometry. Optimal conditions were selected to improve the sensitivity and specificity of the assays. This method allowed simultaneous detection of lymphocytic DNA synthesis, phenotype analysis and cytokine production at the single cell level, and thus it may be a useful tool for analyzing immune responses.     

A simple method to estimate the contribution of biological floc and reactor-solution to mass transfer of oxygen in activated sludge processes

In this study, the mass transfer coefficient of biological floc (K(L)a(bf)) was estimated from the mass transfer coefficient of the mixed-liquor (K(L)a(f)) and the reactor-solution (K(L)a(e)). The biological floc resistance (BFR) and reactor-solution resistance (SR) were defined as the reciprocal of K(L)a(bf) and K(L)a(e), respectively, by applying the concept of serial-resistance originally presented in two-film theory (Lewis and Whitman (1924) Ind Eng Chem 16:1215-1220). The specific biological floc resistance (SBFR) was defined as biological floc resistance per unit biomass concentration. The data indicated that an activated sludge process yielding low BFR/MLR and BFR/SR tended to produce higher oxygen transfer efficiency. Surprisingly, the reactor-solution posed the same level of resistance as clean water in all experiments, except in a 5-day SRT, non-nitrifying, completely mixed activated sludge (CMAS) process run. Furthermore, SBFR successfully represented biological floc and showed a positive correlation to sludge volume index (SVI). In addition, SBFR/SR and oxygen transfer efficiency (OTE(f)) followed an exponential relationship for the complete data set. The method of separating the mixed-liquor into biological floc and reactor-solution improved the understanding of oxygen transfer under process conditions, without resorting to intrusive techniques or direct handling of fragile biological floc.     

DNA probes specific for the yeast species Debaryomyces hansenii: useful tools for rapid identification

We developed a rapid and sensitive identification method for the halotolerant yeast Debaryomyces hansenii, based on the hybridization of species-specific sequences. These sequences were first identified in a survey of D. hansenii strains by random amplification of polymorphic DNA (RAPD) as giving conserved bands in all isolates tested. Two such conserved RAPD products, termed F01pro and M18pro, were cloned from the type strain CBS 767. The specificity of these probes was assessed by hybridizing them to DNA from various species of yeasts commonly found in cheese. F01pro and M18pro hybridized to the DNA of all D. hansenii var. hansenii tested, but not to DNA of other yeast species including the closely related strain of D. hansenii var. fabryii CBS 789. Hybridization patterns of F01pro and M18pro on digested genomic DNA of D. hansenii indicated that the sequences were repeated in the genome of all D. hansenii var. hansenii tested, and gave distinct polymorphic patterns. The single F01pro probe generated 11 different profiles for 24 strains by restriction fragment length polymorphism, using one restriction enzyme. F01pro represents a new type of repeated element found in fungi, useful for both identification and typing of D. hansenii and, together with M18pro, simplifies the study of this species in complex flora.     

Test of Accuracy of LAI Estimation by LAI-2000 under Artificially Changed Leaf to Wood Area Proportions

The accuracy of LAI-2000 Plant Canopy Analyzer for leaf (LAI) and plant (PAI) area indexes measurements was tested in 20-year-old Norway spruce stand using the reduction of canopy biomass. Needle and branch areas were reduced progressively upward every one meter. Values of effective leaf area index (LAI_e), as an uncorrected product of LAI-2000, were compared with directly estimated LAI and PAI values after each reduction step. LAI-2000 underestimates PAI and LAI values according to LAI-2000 rings readings, and varied proportions between leaf and wood areas. The values of LAI_c have been increased with decreasing of the view angle of the relevant LAI-2000 rings. Therefore, the underestimation of LAI becomes smaller when the readings near the horizon are masked. More accurate results, for projected LAI (LAI_p) calculation, are produced by LAI-2000 when some dense grids of measurement points and the most vertical ring readings (0 –13 °) are used. Correction factor 1.6 is possible to use for unreduced canopy hemi-surface LAI estimation, when the last rings (i.e. 5^th and 4^th rings, 47 –74 °) are excluded. Correction factor of 1.25 can be used to compute LAI_p if the angle readings under 43 °are also masked.     

Expression of Acidothermus cellulolyticus endoglucanase E1 in transgenic tobacco: biochemical characteristics and physiological effects

The expression of the Acidothermus cellulolyticus endoglucanase E1 gene in transgenic tobacco (Nicotiana tabacum) was examined in this study, where E1 coding sequence was transcribed under the control of a leaf specific Rubisco small subunit promoter (tomato RbcS-3C). Targeting the E1 protein to the chloroplast was established using a chloroplast transit peptide of Rubisco small subunit protein (tomato RbcS-2A) and confirmed by immunocytochemistry. The E1 produced in transgenic tobacco plants was found to be biologically active, and to accumulate in leaves at levels of up to 1.35% of total soluble protein. Optimum temperature and pH for E1 enzyme activity in leaf extracts were 81°C and 5.25, respectively. E1 activity remained constant on a gram fresh leaf weight basis, but dramatically increased on a total leaf soluble protein basis as leaves aged, or when leaf discs were dehydrated. E1 protein in old leaves, or after 5h dehydration, was partially degraded although E1 activity remained constant. Transgenic plants exhibited normal growth and developmental characteristics with photosynthetic rates similar to those of untransformed SR1 tobacco plants. Results from these biochemical and physiological analyses suggest that the chloroplast is a suitable cellular compartment for accumulation of the hydrolytic E1 enzyme.     

香蕉果实特异性ACC合酶的cDNA克隆及序列分析

根据ACC合酶高度保守区氨基酸序列设计两种兼并引物。通过RTPCR,克隆了香蕉果肉ACC合酶1693bp的cDNA片段。再根据其序列测定结果进行5′RACE(RapidamplificationofcDNAends)。最终确定香蕉果肉中ACC合酶的mRNA全长为1752个核苷酸。其中5′非翻译区74个核苷酸,编码区1461个核苷酸,3′非翻译区217个核苷酸,编码产物为486个氨基酸。通过Northern杂交分析,证明此ACC合酶基因的表达具有果实特异性