赤眼鳟和黄的粘孢子虫两新种

自１９８２年以来,作者在长江中下游进行类寄生虫区系调查时,收集了一定数量的粘孢子虫标本。在鉴定这些标本时发现,寄生在赤眼鳟Ｓｑｕａｌｉｏｂａｒｂｕｓ ｃｕｒｒｉｃｕｌｕｓ（Ｒｉｃｈａｒｄｓｏｎ）和黄Ｈｙｐｓｅｌｅｏｔｒｉｓ ｓｗｉｎｈｏｎｉｓ（Ｇｎｔｈｅｒ）的两种粘孢子虫,均系科学上的新物种。现报道如下。所有度量大小均以μｍ为单位。模式标本保存在中国科学院水生生物研究所鱼病学研究室。１宜都足孢虫新种 Ｐｏｄｏｓｐｏｒａ ｙｉｄｕｅｎｓｉｓ ｓｐ．ｎｏｖ．（图） 寄生：赤眼蹲Ｓｑｕａｌｉｏｂａｒｂｕｓ …     

Herbicide resistant rice (Oryza sativa L.): Global implications for weedy rice and weed management*

Rice cultivars resistant to broad‐spectrum herbicides have been developed and their commercial release is imminent, especially for imidazolinone and glufosinate resistant varieties in the USA and Latin America. Glyphosate‐resistant rice should follow within a few years. Rice growers throughout the world could benefit from the introduction of herbicide‐resistant rice cultivars that would allow in‐crop, selective control of weedy Oryza species. Other perceived benefits are the possibility to control ‘hard‐to‐kill’ weed species and weed populations that have already evolved resistance to herbicides currently used in rice production, especially those of the Echinochloa species complex. Weed management could also be improved by more efficient post‐emergence control. Introduction of herbicide resistant rice could also bring areas heavily infested with weedy rice that have been abandoned back to rice production, allow longer term crop rotations, reduce consumption of fossil fuels, promote the replacement of traditional chemicals by more environmentally benign products, and provide more rice grain without adding new land to production. There are also concerns, however, about the impact of releasing herbicide‐resistant rice on weed problems. Of most concern is the possibility of rapid transfer of the resistance trait to compatible weedy Oryza species. Development of such herbicide resistant weedy rice populations would substantially limit the chemical weed management options for farmers. Herbicide‐resistant rice volunteers also could become problematic, and added selection pressure to weed populations could aggravate already serious weed resistance problems. Because of the risk of weedy Oryza species becoming resistant to broad‐spectrum herbicides, mitigating measures to prevent gene flow, eventually attainable by both conventional breeding and molecular genetics, have been proposed. With commercialisation of the first herbicide resistant varieties planned for 2001, these mitigating measures will not be available for use with this first generation of herbicide resistant rice products. Release of herbicide resistant rice should depend on a thorough risk assessment especially in areas infested with con‐specific weedy rice or intercrossing weedy Oryza species. Regulators will have to balance risks and benefits based on local needs and conditions before allowing commercialisation of herbicide‐resistant rice varieties. If accepted, these varieties should be considered as components of integrated weed management, and a rational herbicide use and weedy rice control should be promoted to prevent losing this novel tool.     

Using Integrative Modeling Platform to compute,validate, and archive a model of a protein complex structure

Biology is advanced by producing structural models of biological systems, such as protein complexes. Some systems are recalcitrant to traditional structure determination methods. In such cases, it may still be possible to produce useful models by integrative structure determination that depends on simultaneous use of multiple types of data. An ensemble of models that are sufficiently consistent with the data is produced by a structural sampling method guided by a data‐dependent scoring function. The variation in the ensemble of models quantified the uncertainty of the structure, generally resulting from the uncertainty in the input information and actual structural heterogeneity in the samples used to produce the data. Here, we describe how to generate, assess, and interpret ensembles of integrative structural models using our open source Integrative Modeling Platform program ( https://integrativemodeling.org ).     

The roles and functions of Paneth cells in Crohn’s disease: A critical review

Paneth cells (PCs) are located at the base of small intestinal crypts and secrete the α‐defensins, human α‐defensin 5 (HD‐5) and human α‐defensin 6 (HD‐6) in response to bacterial, cholinergic and other stimuli. The α‐defensins are broad‐spectrum microbicides that play critical roles in controlling gut microbiota and maintaining intestinal homeostasis. Inflammatory bowel disease, including ulcerative colitis and Crohn's disease (CD), is a complicated autoimmune disorder. The pathogenesis of CD involves genetic factors, environmental factors and microflora. Surprisingly, with regard to genetic factors, many susceptible genes and pathogenic pathways of CD, including nucleotide‐binding oligomerization domain 2 (NOD2), autophagy‐related 16‐like 1 (ATG16L1), immunity‐related guanosine triphosphatase family M (IRGM), wingless‐related integration site (Wnt), leucine‐rich repeat kinase 2 (LRRK2), histone deacetylases (HDACs), caspase‐8 (Casp8) and X‐box‐binding protein‐1 (XBP1), are relevant to PCs. As the underlying mechanisms are being unravelled, PCs are identified as the central element of CD pathogenesis, integrating factors among microbiota, intestinal epithelial barrier dysfunction and the immune system. In the present review, we demonstrate how these genes and pathways regulate CD pathogenesis via their action on PCs and what treatment modalities can be applied to deal with these PC‐mediated pathogenic processes.     

Upper bound estimators of the population size based on ordinal models for capture‐recapture experiments

Capture‐recapture studies have attracted a lot of attention over the past few decades, especially in applied disciplines where a direct estimate for the size of a population of interest is not available. Epidemiology, ecology, public health, and biodiversity are just a few examples. The estimation of the number of unseen units has been a challenge for theoretical statisticians, and considerable progress has been made in providing lower bound estimators for the population size. In fact, it is well known that consistent estimators for this cannot be provided in the very general case. Considering a case where capture‐recapture studies are summarized by a frequency of frequencies distribution, we derive a simple upper bound of the population size based on the cumulative distribution function. We introduce two estimators of this bound, without any specific parametric assumption on the distribution of the observed frequency counts. The behavior of the proposed estimators is investigated using several benchmark datasets and a large‐scale simulation experiment based on the scheme discussed by Pledger.     

基于扎根理论的社区参与国家公园建设与管理的机制研究

大量研究表明自然保护地周边社区居民对保护地的态度是影响社区参与保护,实现保护地管理目标的主要因素,由此建立了"认知-态度-参与"的行为逻辑。中国国家公园体制建设希望进一步推进社区与保护地的关系,全面提升自然保护管理效率,也建立在对这一行为逻辑的认同之上。为验证社区认知与行为的关系,并为促进不同利益相关者参与国家公园建设与管理提供科学支持,研究试图分析武夷山国家公园体制试点区社区居民的国家公园的"认知-态度-参与"的行为逻辑以揭示社区参与国家公园建设与管理的深层机制。与一般研究不同在于,本研究是针对正在建设中的国家公园,使得本地利益相关方的态度有机会影响国家公园建设进程。为获得社区"认知-态度-参与"核心观念,探索社区参与的过程和方式,提出促进社区参与的方法,研究采用扎根理论这一质性研究方法,基于对本地利益相关者采用半结构化开放问题的深度访谈,归纳出概念与范畴,形成社区参与国家公园建设与管理的理论。研究首先形成45个概念与13个范畴,通过范式模型研究发现,稳定资源使用权利、引导社区参与决策、保障社区发展权利、创新社区产业模式、提高个体适应能力、降低政策风险影响等六个主范畴能够解释社区居民对国家公园的认知-态度-参与这一行为逻辑。通过归纳主范畴,研究进一步提炼出社区参与国家公园建设与管理的理论核心在于社区自然资源管理的自主性、创新性与适应性,其内在机制在于社区参与是一个自主性提高的动态过程,需要通过保障社区生计资源禀赋来实现长期的价值转化,最终使其成为社会-生态系统适应性治理的组成部分。在理论阐释基础上,研究提出从改善社区认知、提升社区参与角度推进国家公园建设的路径。研究也指出,所提出的社区参与机制理论能够提炼量化指标评价社区参与,追踪武夷山国家公园体制试点进程。     

Substrate binding to Src: A new perspective on tyrosine kinase substrate recognition from NMR and molecular dynamics

Most signal transduction pathways in humans are regulated by protein kinases through phosphorylation of their protein substrates. Typical eukaryotic protein kinases are of two major types: those that phosphorylate‐specific sequences containing tyrosine (~90 kinases) and those that phosphorylate either serine or threonine (~395 kinases). The highly conserved catalytic domain of protein kinases comprises a smaller N lobe and a larger C lobe separated by a cleft region lined by the activation loop. Prior studies find that protein tyrosine kinases recognize peptide substrates by binding the polypeptide chain along the C‐lobe on one side of the activation loop, while serine/threonine kinases bind their substrates in the cleft and on the side of the activation loop opposite to that of the tyrosine kinases. Substrate binding structural studies have been limited to four families of the tyrosine kinase group, and did not include Src tyrosine kinases. We examined peptide‐substrate binding to Src using paramagnetic‐relaxation‐enhancement NMR combined with molecular dynamics simulations. The results suggest Src tyrosine kinase can bind substrate positioning residues C‐terminal to the phosphoacceptor residue in an orientation similar to serine/threonine kinases, and unlike other tyrosine kinases. Mutagenesis corroborates this new perspective on tyrosine kinase substrate recognition. Rather than an evolutionary split between tyrosine and serine/threonine kinases, a change in substrate recognition may have occurred within the TK group of the human kinome. Protein tyrosine kinases have long been therapeutic targets, but many marketed drugs have deleterious off‐target effects. More accurate knowledge of substrate interactions of tyrosine kinases has the potential for improving drug selectivity.