Accounting for heterogeneity when estimating stopover duration,timing and population size of red knots along the Luannan Coast of Bohai Bay,China

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Spatial patterns and interspecific associations among trees at different stand development stages in the natural secondary forests on the Loess Plateau,China

Quercus wutaishansea populations on the Loess Plateau are currently becoming more dominant in natural secondary forests, whereas Pinus tabulaeformis is declining. In the present paper, the diameter class (instead of age) was used to classify the different growth stages as juvenile, subadult, or adult, and the univariate function g(r) was used to analyze the dynamic changes in spatial patterns and interspecific associations in three 1‐ha tree permanent plots on the Loess Plateau, NW China. Our results suggested that the niche breadth changed with the development stage. The diameter distribution curve was consistent with the inverted “J” type, indicating that natural regeneration was common in all three plots. There was a close relationship between the spatial pattern and scale, which showed significant aggregation at small distances, and became more random as distance increased, but in the Pinus + Quercus mixed forests, the whole species were aggregated at distances up to 50 m. The degree of spatial clumping decreased from juvenile to subadult and from subadult to adult. The spatial pattern also differed at different growth stages, likely due to strong intraspecific competition. Associations among different growth stages were positively correlated at small scales. Our study is important to the understanding of the development of the Q. wutaishansea forests; thus, the spatial dynamic change features should be received greater attention when planning forest management and developing restoration strategies on the Loess Plateau.     

Rational design of therapeutic mAbs against aggregation through protein engineering and incorporation of glycosylation motifs applied to bevacizumab

The aggregation of biotherapeutics is a major hindrance to the development of successful drug candidates; however, the propensity to aggregate is often identified too late in the development phase to permit modification to the protein's sequence. Incorporating rational design for the stability of proteins in early discovery has numerous benefits. We engineered out aggregation-prone regions on the Fab domain of a therapeutic monoclonal antibody, bevacizumab, to rationally design a biobetter drug candidate. With the purpose of stabilizing bevacizumab with respect to aggregation, 2 strategies were undertaken: single point mutations of aggregation-prone residues and engineering a glycosylation site near aggregation-prone residues to mask these residues with a carbohydrate moiety. Both of these approaches lead to comparable decreases in aggregation, with an up to 4-fold reduction in monomer loss. These single mutations and the new glycosylation pattern of the Fab domain do not modify binding to the target. Biobetters with increased stability against aggregation can therefore be generated in a rational manner, by either removing or masking the aggregation-prone region or crowding out protein-protein interactions.     

Power and limitation of soil properties as predictors of variation in peak plant biomass in a northern mixed-grass prairie

Soil properties are thought to affect annual plant productivity in rangelands, and thus soil variables that are consistently correlated with plant biomass may be general indicators of rangeland health. Here we measured several soil properties (e.g. aggregate stability, organic carbon, total nitrogen) and tested each as a would-be predictor of local variation in peak aboveground grassland biomass. Individual properties explained a slight (≤10%) amount of variation in plant biomass. Plant biomass was mainly (negatively) associated with two soil properties, subsurface soil carbonate concentration and the stability of soil macroaggregates near the soil surface. Less important predictive variables included: elevation, plant community composition, surface soil organic carbon, and soil carbon:nitrogen. Plot-to-plot variation in plant biomass is seemingly difficult to predict based on soil properties, including popular indicators of soil and rangeland health and even root biomass. While protection of soil is critical to overall rangeland ecosystem function, our findings suggest that the relationship between soil properties and plant biomass in natural grasslands is complex. Thus, there may not be one or even several soil properties that consistently predict appreciable variation in peak grassland biomass, especially variation within an ecosystem independent of precipitation.     

北京市六环内城市森林结构总体特征

城市森林结构决定了城市森林的外貌、总体绿量,影响其生态效益.本文对北京市六环外1 km范围内城市森林分层抽样调查,研究其多样性及乔木规格,并根据北京城市特点分析其空间差异,以期找出存在问题及梯度变化规律,为北京城市森林多样性保护及科学管理提供依据.通过对各类城市森林847个标准样方的调查,共记录木本植物50科、106属、159种,本地种占75%;城市森林植物群落仍然是少数物种主导,毛白杨(Populus tomentosa Carr.)与国槐(Sophora japonicaL.)分别为使用数量最多(9.7%)和使用频度最高(28.45%)的树种;乔木平均胸径19.79 cm,平均冠幅5.4 m,规格总体偏小,且规格差异不大.北京市城市森林沿城市发展方向由城内向城外展现出了明显的梯度变化:总物种数4环外多于4环内,最高为4~5环112种;多样性指数逐渐降低;乔木规格减小;“城六区”物种组成、多样性及乔木规格均优于其他行政区.     

Habitat use of the ocelot (Leopardus pardalis) in Brazilian Amazon

Amazonia forest plays a major role in providing ecosystem services for human and sanctuaries for wildlife. However, ongoing deforestation and habitat fragmentation in the Brazilian Amazon has threatened both. The ocelot is an ecologically important mesopredator and a potential conservation ambassador species, yet there are no previous studies on its habitat preference and spatial patterns in this biome. From 2010 to 2017, twelve sites were surveyed, totaling 899 camera trap stations, the largest known dataset for this species. Using occupancy modeling incorporating spatial autocorrelation, we assessed habitat use for ocelot populations across the Brazilian Amazon. Our results revealed a positive sigmoidal correlation between remote‐sensing derived metrics of forest cover, disjunct core area density, elevation, distance to roads, distance to settlements and habitat use, and that habitat use by ocelots was negatively associated with slope and distance to river/lake. These findings shed light on the regional scale habitat use of ocelots and indicate important species–habitat relationships, thus providing valuable information for conservation management and land‐use planning.     

Spatial transcriptional mapping of the human nephrogenic program

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Identification of long-lived proteins in the mitochondria reveals increased stability of the electron transport chain

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Conformational analysis of protein structures derived from NMR data

A study is presented of the conformational characteristics of NMR-derived protein structures in the Protein Data Bank compared to X-ray structures. Both ensemble and energy-minimized average structures are analyzed. We have addressed the problem using the methods developed for crystal structures by examining the distribution of ?, Ψ, and χ angles as indicators of global conformational irregularity. All these features in NMR structures occur to varying degrees in multiple conformational states. Some measures of local geometry are very tightly constrained by the methods used to generate the structure, e.g., proline ? angles, α-helix ?, Ψ angles, ω angles, and C_α chirality. The more lightly restrained torsion angles do show increasead clustering as the number of overall experimental observations increases. ?, Ψ, and χ₁ angle conformational heterogeneity is strongly correlated with accessibility but shows additional differences which reflect the differing number of observations possible in NMR for the various side chains (e.g., many for Trp, few for Ser). In general, we find that the core is defined to a notional resolution of 2.0 to 2.3 Å. Of real interest is the behavior of surface residues and in particular the side chains where multiple rotameric states in different structures can vary from 10% to 88%. Later generation structures show a much tighter definition which correlates with increasing use of J-coupling information, stereospecific assignments, and heteronumclear techniques. A suite of programs is being developed to address the special needs of NMR-derived structures which will take into account the existence of increased mobility in solution. © 1993 Wiley-Liss, Inc.