US Fish and Wildlife Service 1979 wetland classification: A review

In 1979 the US Fish and Wildlife Service published and adopted a classification of wetlands and deepwater habitats of the United States. The system was designed for use in a national inventory of wetlands. It was intended to be ecologically based, to furnish the mapping units needed for the inventory, and to provide national consistency in terminology and definition. We review the performance of the classification after 13 years of use. The definition of wetland is based on national lists of hydric soils and plants that occur in wetlands. Our experience suggests that wetland classifications must facilitate mapping and inventory because these data gathering functions are essential to management and preservation of the wetland resource, but the definitions and taxa must have ecological basis. The most serious problem faced in construction of the classification was lack of data for many of the diverse wetland types. Review of the performance of the classification suggests that, for the most part, it was successful in accomplishing its objectives, but that problem areas should be corrected and modification could strengthen its utility. The classification, at least in concept, could be applied outside the United States. Experience gained in use of the classification can furnish guidance as to pitfalls to be avoided in the wetland classification process.The US Government's right to retain a non-exclusive, royalty free licence in and to any copyright is acknowledged.     

Surface water conditions in the Northern Benguela Region (SE Atlantic) during the last 450 ky reconstructed from assemblages of planktonic foraminifera

Planktonic foraminiferal records from Site 1083 (ODP Leg 175) were used to investigate changes in surface water conditions in the Northern Benguela Region over the past 450 ky. The assemblages of planktonic foraminifera are dominated by four species: sinistral coiling Neogloboquadrina pachyderma, dextral coiling N. pachyderma, Globigerina bulloides and Globorotalia inflata. Besides, tropical species deliver a small contribution to the assemblage.The most prominent temporal variations, displayed by N. pachyderma (s+d), represent changes in the coastal upwelling and the presence of cold, nutrient rich waters over the core site. Neogloboquadrina pachyderma (s+d) shows cyclic variability in the eccentricity and, to a less extent, precession frequencies. The changes indicate increased upwelling intensity in glacial maxima and precession maxima, and correlate well with the wind-strength record of Stuut et al. (2002). During glacial maxima, steep temperature gradients over the Southern Hemisphere caused strong SE trade winds and strong upwelling. Precession maxima cause a weak monsoonal circulation, more zonal SE trade winds, strong coastal upwelling, and nutrient-rich surface waters over ODP Site 1083.Advection of Angola Current (AC) surface water into the Walvis Basin, indicated by the tropical species, occurs when the Angola Benguela Front (ABF) is positioned southward. Occasionally, this happened during glacial maxima, as can be explained with the reconstructed and predicted meridional movements of the ABF. The amount of AC water was never sufficient to suppress the marine biological production at the core site.The contribution of Benguela Current (BC) water, reflected by Globorotalia inflata, is greatly determined by the upwelling. In periods of strong upwelling, the BC influence is suppressed.In several glacial substages, the temperature of the upwelling South Atlantic Central Water (SACW) may have been increased, as suggested by the dominance of Neogloboquadrina pachyderma (d) in the upwelling record. This phenomenon may be due to intensified subduction in the central South Atlantic that induces the formation of SACW, or to larger contributions of Eastern SACW to the upwelling water.Around 250–200 ky BP, a long-term shift to higher productivity occurred that is absent in the upwelling record. It was accompanied with a transition from a precession and obliquity variability to an eccentricity dominated variability in the Globorotalia inflata (BC) record. The shift was probably connected to a long-term southward shift of the circumpolar oceanic frontal systems south of the African continent.     

Effects of Patch Size and Floral Herbivory on Seed Set in Trichogoniopsis adenantha (Asteraceae) in Southeastern Brazil1

The effects of patch size and floral herbivory on reproductive success of Trichogoniopsis adenantha (Asteraceae) were studied in a semideciduous forest in southeastern Brazil. Plants in large patches and capitula not attacked by endophagous insects had higher seed set. The consequences of living in large or small patches for plant reproductive success are discussed.     

On top of biosynthetic gene clusters: How epigenetic machinery influences secondary metabolism in fungi

Fungi produce an abundance of bioactive secondary metabolites which can be utilized as antibiotics and pharmaceutical drugs. The genes encoding secondary metabolites are contiguously arranged in biosynthetic gene clusters (BGCs), which supports co-regulation of all genes required for any one metabolite. However, an ongoing challenge to harvest this fungal wealth is the finding that many of the BGCs are ‘silent’ in laboratory settings and lie in heterochromatic regions of the genome. Successful approaches allowing access to these regions - in essence converting the heterochromatin covering BGCs to euchromatin - include use of epigenetic stimulants and genetic manipulation of histone modifying proteins. This review provides a comprehensive look at the chromatin remodeling proteins which have been shown to regulate secondary metabolism, the use of chemical inhibitors used to induce BGCs, and provides future perspectives on expansion of epigenetic tools and concepts to mine the fungal metabolome.     

Asteroids,ophiuroids and holothurians from the southeastern Weddell Sea (Southern Ocean)

Until the early 1980s, the composition and distribution of the asteroid (starfish), ophiuroid (brittle star) and holothurian (sea cucumber) bottom fauna of the southeastern Weddell Sea was virtually unknown. This southernmost part of the Atlantic sector of the Southern Ocean is a typical high-latitude Antarctic region located in the circumpolar permanent pack-ice zone. It became accessible for large-scale scientific surveys only through the availability of modern ice-breaking research vessels, such as the German RV “Polarstern”. Here, we describe a dataset of the faunal composition and abundance of starfish, brittle star and sea cucumber assemblages in this area, based on collections from trawl catches carried out during three “Polarstern” cruises in 1983, 1984 and 1985. The set comprises a total of 4,509 records of abundances of 35 asteroid species (with a total of 2,089 specimens) and 38 ophiuroid species (with a total of 18,484 specimens) from 34 stations, as well as of 66 holothurian species (with a total of 20,918 specimens) from 59 stations including zero-abundances (absences). A synthesizing zoogeographical community analysis confirms the presence of three distinct assemblages of asteroids, ophiuroids, and holothurians with highest species richness on the eastern shelf. Overall, starfishes, brittle stars and sea cucumbers were present at all sites investigated in the study area but composition and abundance of asterozoan (asteroids and ophiuroids together) and holothurian fauna varied considerably. A synthesizing zoogeographical community analysis confirms the presence of three distinct assemblages of asteroids, ophiuroids, and holothurians with highest species richness on the eastern shelf. In the case of asterozoans, water depth and latitude seemed to be the most important drivers of assemblage distribution and composition. One of the holothurian assemblages was part of the rich macrozoobenthic community dominated by a diverse and abundant epifauna, mainly sponges and gorgonians. Another one was mainly composed of vagrant deposit-feeding species inhabiting a predominantly non-colonised substratum. In addition, a mixed holothurian assemblage was identified.     

英国国家公园建设活动管控的经验与启示

随着国家公园试点工作在全国的进一步推进,包括管理制度在内的各类议题就一直处于探讨之中。英国国家公园因其大量的居民点分布其中而与中国的国家公园试点区有着诸多相似之处,其成熟的建设活动管控制度对中国的国家公园也有着借鉴作用。本文以英格兰地区为对象,对英国国家公园建设活动管控的制度基础、管控程序2方面进行分析。最后在分析中国自然保护地建设管控问题的基础上,提出针对中国国家公园建设活动管控制度的建议。     

Determination of the CCR5∆32 frequency in Emiratis and Tunisians and the screening of the CCR5 gene for novel alleles in Emiratis

Background

The chemokine receptor components play crucial roles in the immune system and some of them serve as co-receptors for the HIV virus. Several studies have documented that variants in chemokine receptors are correlated with susceptibility and resistance to infection with HIV virus. For example, mutations in the chemokine receptor 5 gene (CCR5) resulting in loss-of-function (such as the homozygous CCR5?32) confer high degree of resistance to HIV infection. Heterozygotes for these variants exhibit slow progression to AIDS. The prevalence of CCR5 polymorphisms varies among ethnic and geographical groups. For example, the CCR5?32 variant is present in 10–15% of north Europeans but is rarely encountered among Africans. This study aims to identify the prevalence of some CCR5 variants in two geographically distant Arab populations (namely Emiratis and Tunisians).

Methodology

The prevalence of CCR5 gene variants including CCR5?32, FS299, C101X, A29S and C178R has been determined using PCR and direct DNA sequencing. A total of 403 unrelated healthy individuals (253 Emiratis and 150 Tunisians) were genotyped for the CCR5?32 variant using PCR amplification and gel electrophoresis. In addition, 200 Emiratis have been screened for other SNPs using Sanger DNA sequencing.

Results

Among Emiratis, the allele frequency of the CCR5?32 variant has been found to be 0.002. In addition, two variants L55Q and A159 were found at a frequency of 0.002. Moreover, the prevalence of the CCR5?32 variant in Tunisians was estimated to be 0.013 which is relatively higher than its frequency in Emiratis but lower than Europeans.

Conclusion

We conclude that the allele frequency of the most critical CCR5 polymorphism (?32) is extremely low among Emiratis compared to other Arabs and North Europeans. In addition, very low allele frequencies of other CCR5 polymorphisms have been detected among Emiratis.     

Infections and human tissue transplants: review of FDA MedWatch reports 2001–2004

Background More than 1.5 million tissue allografts are transplanted annually in the U.S. As part of the federal effort to improve tissue safety, FDA’s May 2005 Current Good Tissue Practices (CGTP) Rule requires tissue establishments to report to FDA serious infectious adverse events following allograft transplantation. To provide baseline data, we summarize reports of such infections received by FDA prior to the CGTP Rule. Methods We reviewed reports received by FDA’s MedWatch adverse event reporting system during 2001–2004. Our case definition was a reported infection in a human tissue transplant recipient within 1 year of transplantation. We examined demographics, tissue type, clinical outcomes and interventions, infectious organism(s), time from transplant to infection and reporter characteristics. Results We identified 83 reports of infections following allograft transplantations. Median patient age was 40 years (range: 1 month–87 years). The allografts included heart valves (42%), tendons (33%), bones (8%), blood vessels (6%), ocular tissues (5%), and skin (4%). Commonly reported outcomes and interventions were hospitalization (72%), antibiotic therapy (46%) and graft removal (42%). Nine of 11 patients who expired had received heart valves. In 65 reports that identified suspected organisms, bacteria were most common (42), followed by fungi (25) and prions (1). The median time from transplant to infection was 5.5 weeks (range: 3 days–52 weeks). Tissue manufacturers submitted 26% of reports. Among the remaining 74%, the reporters were quality assurance staff, infection control or risk management personnel (45%); physicians (15%); consumers (15%); nurses (13%); and surgical staff (12%). Conclusion This is the first review of reports to FDA for infections following allograft tissue transplantations. Infections led to serious outcomes and involved many tissue types. Although we were unable to confirm that reported infections were caused by the suspected tissue product, required reporting by tissue establishments and improvements in adverse event investigation will help to improve tissue safety surveillance.     

Molecular and cellular studies evaluating a potent 2-cyanoindolizine catechol diether NNRTI targeting wildtype and Y181C mutant HIV-1 reverse transcriptase

The development of efficacious NNRTIs for HIV/AIDS therapy is commonly met with the emergence of drug resistant strains, including the Y181C variant. Using a computationally-guided approach, we synthesized the catechol diether series of NNRTIs, which display sub-nanomolar potency in cellular assays. Among the most potent were a series of 2-cyanoindolizine substituted catechol diethers, including Compound 1. We present here a thorough evaluation of this compound, including biochemical, cellular, and structural studies. The compound demonstrates low nanomolar potency against both WT and Y181C HIV-1 RT in in vitro and cellular assays. Our crystal structures of both the wildtype and mutant forms of RT in complex with Compound 1 allow the interrogation of this compound’s features that allow it to maintain strong efficacy against the drug resistant mutant. Among these are compensatory shifts in the NNRTI binding pocket, persistence of multiple hydrogen bonds, and van der Waals contacts throughout the binding site. Further, the fluorine at the C6 position of the indolizine moiety makes multiple favorable interactions with both RT forms. The present study highlights the indolizine-substituted catechol diether class of NNRTIs as promising therapeutic candidates possessing optimal pharmacological properties and significant potency against multiple RT variants.     

Scaling up the diversity–resilience relationship with trait databases and remote sensing data: the recovery of productivity after wildfire

Understanding the mechanisms underlying ecosystem resilience – why some systems have an irreversible response to disturbances while others recover – is critical for conserving biodiversity and ecosystem function in the face of global change. Despite the widespread acceptance of a positive relationship between biodiversity and resilience, empirical evidence for this relationship remains fairly limited in scope and localized in scale. Assessing resilience at the large landscape and regional scales most relevant to land management and conservation practices has been limited by the ability to measure both diversity and resilience over large spatial scales. Here, we combined tools used in large‐scale studies of biodiversity (remote sensing and trait databases) with theoretical advances developed from small‐scale experiments to ask whether the functional diversity within a range of woodland and forest ecosystems influences the recovery of productivity after wildfires across the four‐corner region of the United States. We additionally asked how environmental variation (topography, macroclimate) across this geographic region influences such resilience, either directly or indirectly via changes in functional diversity. Using path analysis, we found that functional diversity in regeneration traits (fire tolerance, fire resistance, resprout ability) was a stronger predictor of the recovery of productivity after wildfire than the functional diversity of seed mass or species richness. Moreover, slope, elevation, and aspect either directly or indirectly influenced the recovery of productivity, likely via their effect on microclimate, while macroclimate had no direct or indirect effects. Our study provides some of the first direct empirical evidence for functional diversity increasing resilience at large spatial scales. Our approach highlights the power of combining theory based on local‐scale studies with tools used in studies at large spatial scales and trait databases to understand pressing environmental issues.