Extent and role for fish populations of riverine ecotones along the Sinnamary river (French Guiana)

The Sinnamary is a small tropical river (250 km long, watershed of 6500 km²) where a dam is to be impounded in 1994.The extent of naturally periodically flooded areas along the Sinnamary river is estimated by using remote sensing (Landsat TM satellite data) and botanical groupings are described on in situ observations, ground truth and collections. The fish assemblages of these areas are described and their density estimated by rotenone sampling. The role of this ecotone to fish populations is discussed.The extent of the inundated areas appears to be greater than previously estimated by classical mapping.As expected, the fish fauna is mostly composed of fish juveniles and adults of dwarf (< 3 cm) and small (< 15 cm) species. Large predators where not found. Due to these characteristics, fish are abundant but their biomass is low in naturally inundated areas. However, juveniles of some species found only in these zones. Therefore their adult populations will probably be very sensitive to any modification of these land/water ecotones.     

Protected areas for the 21st century: working to provide benefits to society

Since the first national park was created at Yellowstone in the USA in 1872, over 8500 protected areas have been established worldwide. Virtually all countries have seen the wisdom of protecting areas of outstanding importance to society, and such sites now cover over 5% of Earth's land surface. However, many of these protected areas exist only on paper, not on the ground. Most are suffering from a combination of threats, including pollution, over-exploitation, encroachment, poaching, and many others. In a period of growing demands on resources and shrinking government budgets, new approaches are required to ensure that protected areas can continue to make their contributions to society. First and foremost, protected areas must be designed and managed in order to provide tangible and intangible benefits to society. This will involve integrating protected areas into larger planning and management frameworks, linking protected areas to biodiversity and climate change, promoting greater financial support for protected areas, and expanding international cooperation in the finance, development and management of protected areas.     

A simple apparatus for sampling epiphytic communities associated with emergent macrophytes

The apparatus allows the sampling of both algal and animal components of the epiphyton. It consists of a perspex tube, 100 cm long with an internal diameter of 4 cm, and of an epiphytic sieve. The latter is made of two 2.5 cm cross-sections of perspex tubing with a piece of circular mesh glued between them. While sampling, a randomly chosen shoot is isolated from the ambient water by means of the tube, cut at the bottom sediment and removed together with epiphyton. The water, taken together with the shoot is then removed using the epiphytic sieve, joined with the tube under the water surface. The detached organisms, associated with the stem and those scraped from the stem with a stiff brush afterwards, concentrate on the mesh.     

Effects of commercial trawling activities in the diet of the flat fish Citharus linguatula (Osteichthyes: Pleuronectiformes) and the starfish Astropecten irregularis (Echinodermata: Asteroidea)

This study assesses the effects of commercial trawling on benthic fauna, by analysing differences in the population structure and diet of benthic organisms inhabiting fishing grounds. The study is focused on two epifaunal species collected from a fishing ground in the north-western Mediterranean, which included a portion of un-trawled seabed used as a reference of undisturbed community. The selected species were the flatfish Citharus linguatula, more abundant at the undisturbed site and previously characterised as a surface predator and vulnerable to trawling, and the starfish Astropecten irregularis, which dominated the epibenthic community and had been characterised as an opportunistic species with low vulnerability to trawling. Both species were selective feeders and ingested similar prey species at each of the two sites, although differences in the relative prey abundance found in the stomachs occurred between sites. A. irregularis at the fished site mainly ingested gastropods, whereas higher proportion of bivalves was ingested at the undisturbed site. C. linguatula diet mainly composed of crustaceans at both sites, but there was an increase in the ingestion of small fish at the fished site. Moreover, prey ingestion of these two species generally increased with fishing activity. Trawling appears to modify the diet of these two species in terms of relative abundance of ingested prey, nevertheless, increased opportunism due to trawling disturbance was not detected and the density of these predators over fishing grounds was more closely related to their vulnerability to trawling.     

Genomic structure predicts metabolite dynamics in microbial communities

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Comparative evaluation of anaerobic bacterial communities associated with roots of submerged macrophytes growing in marine or brackish water sediments

Sediment microbial communities are important for seagrass growth and carbon cycling, however relatively few studies have addressed the composition of prokaryotic communities in seagrass bed sediments. Selective media were used enumerate culturable anaerobic bacteria associated with the roots of the seagrass, Halodule wrightii, the fresh to brackish water plant, Vallisneria americana, and the respective vegetated and unvegetated sediments. H. wrightii roots and sediments had high numbers of sulfate-reducing bacteria whereas iron-reducing bacteria appeared to have a more significant role in V. americana roots and sediments. Numbers of glucose-utilizing but not acetate-utilizing iron reducers were higher on the roots of both plants relative to the vegetated sediments indicating a difference within the iron reducing bacterial community. H. wrightii roots had lower glucose-utilizing iron reducers, and higher acetogenic bacteria than did V. americana roots suggesting different aquatic plants support different anaerobic microbial communities. Sulfur-disproportionating and sulfide-oxidizing bacteria were also cultured from the roots and sediments. These results provide evidence of the potential importance of sulfur cycle bacteria, in addition to sulfate-reducing bacteria, in seagrass bed sediments.     

Biological guidelines for freshwater sediment based on BEnthic Assessment of SedimenT (the BEAST) using a multivariate approach for predicting biological state

Abstract This paper describes the first results for an alternative approach to the development of sediment quality criteria in the nearshore areas of the Laurentian Great Lakes. The approach is derived from methods developed in the United Kingdom for establishing predictive relationships between macroinvertebrate fauna and the physico-chemistry of riverine environments. The technique involves a multivariate statistical approach using (i) data on the structure of benthic invertebrate communities, (ii) functional responses (survival, growth and reproduction) in four sediment toxicity tests (bioassays) with benthic invertebrates; and (iii) selected environmental variables at 96 reference (‘clean’) sites in the nearshore areas of all five Great Lakes (Lakes Superior, Huron, Erie, Ontario and Michigan). Two pattern recognition techniques (using the computer software package PATN) are employed in the analysis: cluster analysis and ordination. The ordination vector scores from the original axes of the pattern analysis are correlated (using CORR in SAS) with environmental variables which are anticipated to be least affected by anthropogenic activities (e. g. alkalinity, depth, silt, sodium etc.). Multiple discriminant analysis (MDA) is used to relate the site groupings from the pattern analysis to the environmental variables and to generate a model that can be used to predict community assemblages and functional responses at new sites with unknown but potential contamination. The predicted community assemblages and functional responses are then compared with the actual benthic communities and responses at a site, and the need for remedial action is determined. The predictive capability of the discriminant model was confirmed by performing several validation runs on subsets of the data. An example of the use of the model for sediment in Collingwood Bay (an area of concern designated by the IJC in Georgian Bay, Lake Huron) is presented and the technique is shown to be more precise in determining the need for remediation than the currently used provincial sediment quality criteria based on Screening Level Concentration (SLC) and laboratory toxicity tests. The ultimate goal of the study is the development of a method to determine the need for, and the success of, remedial action and to predict what benthic communities should look like at a site if it were clean and what responses of organisms in sediment toxicity tests constitute an acceptable end-point.     

High Organic Carbon Export Precludes Eutrophication Responses in Experimental Rocky Shore Communities

We studied the effect of nutrient inputs on the carbon (C) budget of rocky shore communities using a set of eight large experimental mesocosms. The mesocosms received a range of inorganic nitrogen (N) and phosphorus (P) additions, at an N:P ratio of 16. These additions were designed to elevate the background concentration, relative to that in eutrophic Oslofjord (Norway) waters, by 1, 2, 4, 8, 16, 32 μmol dissolved inorganic nitrogen (DIN)l⁻¹ (and the corresponding P increase). Two unamended mesocosms were used as controls. The nutrients were added continuously for 27 months before gross primary production (GPP), respiration (R), net community production (NCP), and dissolved organic carbon (DOC) production were assessed for the dominant algal species (Fucus serratus) and for the whole experimental ecosystem. Inputs and outputs of DOC and particulate organic carbon (POC) from the mesocosms were also quantified. The F. serratus communities were generally autotrophic (average P/R ratio = 1.33 ± 0.12), with the GPP independent of the nutrient inputs to the mesocosms, and maintained a high net DOC production during both day (0.026 ± 0.008 g C m⁻² h⁻¹) and night (0.015 ± 0.004 g C m⁻² h⁻¹). All the experimental rocky shore ecosystems were autotrophic (P/R ratio = 2.04 ± 0.28), and neither macroalgal biomass nor production varied significantly with increasing nutrient inputs. Most of the excess production from these autotrophic ecosystems was exported from the systems as DOC, which accounted for 69% and 58% of the NCP of the dominant community and the experimental ecosystem, respectively, the rest being lost as POC. High DOC release and subsequent export from the highly energetic environments occupied by rocky shore communities may prevent the development of eutrophication symptoms and render these communities resistant to eutrophication. Received 10 October 2001; accepted 18 July 2002.     

Exploration of spatial and temporal patterns of fish diversity and composition in a tropical estuarine system of Mexico

There are many studies of fish assemblages intemperate systems, but little informationexists about tropical estuarine systems,particularly in the Western Atlantic Regionincluding Mexico. We investigated the fishcommunity structure in the Pueblo Viejo lagoon,Veracruz. Biological samples were collectedmonthly for one year at six sites: three withdense stands of Ruppia maritima and threesites without submerged vegetation. For eachsample, temperature, salinity, dissolvedoxygen, turbidity and depth were analyzed. Theunbiased Simpson diversity index, CanonicalCorrespondence Analysis (CCA) and DiscriminantAnalysis (DA) were used to analyze the fishcommunity. Environmental abiotic variablestended to show significant temporal, but notspatial differences. Fish diversity showedonly a weak significant correlation with watertemperature, and relatively strong diversitypeaks, from June to August and April, wererelated to production peaks in the system. Thetwo first axes of CCA accounted for 65% of thespecies-environment biplot variance, whichsuggested that monthly changes of salinity,turbidity and precipitation, and presence orabsence of submerged vegetation, were the mostimportant environmental variables indetermining the observed variability in fishcommunity composition. Further, fish diversitywas significantly different between habitatswith and those without the presence ofsubmerged vegetation (P < 0.02). A DA showedsignificant differences (P < 0.03) in fishcommunity composition between both kinds ofhabitats, with Lagodon rhomboides,Mugil curema and Menidia beryllina(substantially more abundant in habitat withsubmerged vegetation) as the most importantspecies in the discrimination of spatial fishcomposition. Considering both habitatscombined, fewer differences were observed infish diversity and community compositionbetween rainy and dry seasons. Fish communitycomposition showed greater similarity betweenseasons than between habitats, despite the factthat environmental abiotic variables showed aninverse pattern, suggesting that site factors,such as the presence of submerged vegetation,play a more important role in the maintenanceof fish community patterns than those relatedto temporal influence.     

宏蛋白质组学:研究微生物群落的一种新策略

宏蛋白质组学是一种运用蛋白质组技术对特定微生物群落所产生的全部蛋白质进行大规模研究与分析的新技术。简要概述宏蛋白组学的产生、研究策略及其应用情况,并对其应用前景进行展望。