How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants

In natural forests, hundreds of fungal species colonize plant roots. The preference or specificity for partners in these symbiotic relationships is a key to understanding how the community structures of root‐associated fungi and their host plants influence each other. In an oak‐dominated forest in Japan, we investigated the root‐associated fungal community based on a pyrosequencing analysis of the roots of 33 plant species. Of the 387 fungal taxa observed, 153 (39.5%) were identified on at least two plant species. Although many mycorrhizal and root‐endophytic fungi are shared between the plant species, the five most common plant species in the community had specificity in their association with fungal taxa. Likewise, fungi displayed remarkable variation in their association specificity for plants even within the same phylogenetic or ecological groups. For example, some fungi in the ectomycorrhizal family Russulaceae were detected almost exclusively on specific oak (Quercus) species, whereas other Russulaceae fungi were found even on “non‐ectomycorrhizal” plants (e.g., Lyonia and Ilex). Putatively endophytic ascomycetes in the orders Helotiales and Chaetothyriales also displayed variation in their association specificity and many of them were shared among plant species as major symbionts. These results suggest that the entire structure of belowground plant–fungal associations is described neither by the random sharing of hosts/symbionts nor by complete compartmentalization by mycorrhizal type. Rather, the colonization of multiple types of mycorrhizal fungi on the same plant species and the prevalence of diverse root‐endophytic fungi may be important features of belowground linkage between plant and fungal communities.     

Diverse populations of lake water bacteria exhibit chemotaxis towards inorganic nutrients

Chemotaxis allows microorganisms to rapidly respond to different environmental stimuli; however, understanding of this process is limited by conventional assays, which typically focus on the response of single axenic cultures to given compounds. In this study, we used a modified capillary assay coupled with flow cytometry and 16S rRNA gene amplicon pyrosequencing to enumerate and identify populations within a lake water microbial community that exhibited chemotaxis towards ammonium, nitrate and phosphate. All compounds elicited chemotactic responses from populations within the lake water, with members of Sphingobacteriales exhibiting the strongest responses to nitrate and phosphate, and representatives of the Variovorax, Actinobacteria ACK-M1 and Methylophilaceae exhibiting the strongest responses to ammonium. Our results suggest that chemotaxis towards inorganic substrates may influence the rates of biogeochemical processes.     

陕西洋县药用植物群落土壤种子库特性研究

采用种子萌发法对洋县药用植物群落土壤种子库物种组成、单位面积种子密度、物种丰富度及与地上群落结构的关系进行了研究。结果显示,研究区内共有种子植物50种(包括药用植物21种),隶属于28科47属,其中草本植物45种、乔木5种;不同药用植物群落间土壤种子库种子密度差异显著,从大到小依次为:2年生凹叶厚朴(Magnolia officinalis Rehd.et Wils.subsp.biloba(Rehd.et Wils.)Law)4年生凹叶厚朴7年生凹叶厚朴11年生凹叶厚朴杜仲-凹叶厚朴(Eucommia ulmoides Oliver-Magnolia officinalis Rehd.et Wils.subsp.biloba(Rehd.et Wils.)Law)7年生厚朴(Magnolia officinalis Rehd.et Wils.)杜仲山茱萸(Cornus officinalis Sieb.et Zucc.)山茱萸-凹叶厚朴;土壤种子库具有表聚性,土层深度与种子数量成负相关;药用植物群落土壤种子库与地上群落结构相似性普遍较低。低林龄群落的土壤种子库密度大于高林龄群落,因此低林龄群落有利于天然更新,它们在植被恢复和生物多样性保护中的潜在价值更大。本研究结果可为洋县药用植物群落天然更新提供理论指导。     

Dieback of riparian alder caused by the Phytophthora alni complex: projected consequences for stream ecosystems

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Landscape‐scale spatial abundance distributions discriminate core from random components of boreal lake bacterioplankton

Aquatic bacterial communities harbour thousands of coexisting taxa. To meet the challenge of discriminating between a ‘core’ and a sporadically occurring ‘random’ component of these communities, we explored the spatial abundance distribution of individual bacterioplankton taxa across 198 boreal lakes and their associated fluvial networks (188 rivers). We found that all taxa could be grouped into four distinct categories based on model statistical distributions (normal like, bimodal, logistic and lognormal). The distribution patterns across lakes and their associated river networks showed that lake communities are composed of a core of taxa whose distribution appears to be linked to in‐lake environmental sorting (normal‐like and bimodal categories), and a large fraction of mostly rare bacteria (94% of all taxa) whose presence appears to be largely random and linked to downstream transport in aquatic networks (logistic and lognormal categories). These rare taxa are thus likely to reflect species sorting at upstream locations, providing a perspective of the conditions prevailing in entire aquatic networks rather than only in lakes.     

Thyme travels: 15N isoscapes of Thymus vulgaris L. invasion in lightly grazed pastoral communities

Alterations to ecosystem nitrogen (N) cycling by introduced plant species may increase the invasibility of habitat providing a positive feedback for the introduced species to become invasive. Spatial patterns of foliar and soil δ¹⁵N ratios reflect variation in rates and process of N‐cycling across invaded landscapes and provide insight into N‐source uptake and utilization strategies of invasive plant species. To evaluate invasion‐associated changes in soil and foliar δ¹⁵N at different scales: regional (among different sites), local (between north‐ and south‐facing aspect at the same site), and microsite (within populations in the same community), we measured foliar and soil δ¹⁵ N, animal faeces cover (as a proxy for grazing intensity) and N₂‐fixing species cover from inside to outside Thymus vulgaris L. (thyme)‐invaded lightly grazed pastoral communities in Central Otago, southern South Island, New Zealand. Mean thyme foliar δ¹⁵N were near‐zero across the invaded landscape, and did not change across the advancing edge of invasion or with aspect. There was no evidence that associations with N₂‐fixing species provide a potential N source. Soil δ¹⁵N was lower inside of thyme compared to at the edge or outside of thyme and was varied between aspects at some sites. Animal faeces cover as a proxy for grazing intensity explained only 23% of this observed variation of soil δ¹⁵N. Thyme invasion may result in lowered soil δ¹⁵N reflecting alterations to N dynamics. Associated invasion‐related impacts of animal grazing may also impact soil δ¹⁵N. Further studies are required to distinguish the underlying mechanism responsible for the observed patterns of foliar and soil δ¹⁵N values across thyme‐invaded Central Otago landscapes.     

Community participation and ecological criteria for selecting species and restoring natural capital with native species in the Sahel

Combining community needs and preferences with dryland plant expertise in order to select suitable native species for large‐scale natural capital restoration is the approach that has been successful in the Sahel as part of Africa's Great Green Wall program. In order to increase plant diversity and restore degraded land, we investigated four cross‐border regions of Mali, Burkina Faso, and Niger, all located in dryland ecosystems of the Sahel. In 120 beneficiary village communities, with a total population of over 50,000 farmers, including 51% women, participatory diagnostic meetings were conducted, leading to the selection of 193 plant species, most of which were mainly used for food, medicine, fodder, and fuel. Of these, 170 were native and considered suitable for enriching and restoring those village lands. The most environmentally well‐adapted and economically relevant species were prioritized, quality seeds were collected, and nursery seedlings produced under technical supervision of villages. From 2013 to 2015, 55 woody and herbaceous species were planted to initiate restoration of 2,235 ha of degraded land. On average, 60% of seedlings survived and grew well in the field after three rainy seasons. Due to its multiple uses, including gum arabic production, Acacia senegal was preferred by local people in most cases, accounting for 30% of seedlings planted. Such promising results, in an effort to restore degraded land for and with the help of thousands of farmers, could not have been achieved without the combination of scientific plant expertise and efficient rural capacity development, underpinned by high levels of community engagement.