蔚县盆地牛头山(铺路)剖面晚上新世/早更新世小哺乳动物

牛头山(=铺路)剖面6个含化石层位中,第3、6、9和第12层为晚上新世,第15、16层为早更新世。晚上新世以Hypolagus,Nannocricetus mongolicus,Sinocricetus progressus,Mesosiph- neus,Pliosiphneus,Pseudomeriones complicidens,Micromys tedfordi等的最后绝灭为特征;早更新世以Allophaiomys deucalion,Yangia等的出现为特征。根据岩石地层和小哺乳动物组合分析,该剖面上新世/更新世界限应在第12-13层之间。根据动物组合或动物群的对比,将牛头山剖面、钱家沙洼村的洞沟剖面与小水沟剖面、东窑子头村的大南沟剖面及稻地村的老窝沟剖面的不同层位进行了时代排序。     

A Non-canonical BRCT-Phosphopeptide Recognition Mechanism Underlies RhoA Activation in Cytokinesis

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Nucleotide binding to the G12V-mutant of Cdc42 investigated by X-ray diffraction and fluorescence spectroscopy: two different nucleotide states in one crystal

The 2.5 A crystal structure of the full length human placental isoform of the Gly12 to Val mutant Cdc42 protein (Cdc42(G12V)) bound to both GDP/Mg2+ and GDPNH2 (guanosine-5'-diphospho-beta-amidate) is reported. The crystal contains two molecules in the asymmetric unit, of which one has bound GDP/Mg2+, while the other has bound GDPNH2 without a Mg2+ ion. Crystallization of the protein was induced via hydrolysis of the Cdc42 x GppNHp complex by the presence of contaminating alkaline phosphatase activity in combination with the crystallization conditions. This prompted us to compare the binding characteristics of GDPNH2 vs. GDP. The amino group of GDPNH2 drastically reduces the affinity to Cdc42 in comparison with that of GDP, causes the loss of the Mg2+ ion, and apparently also increases the conformational flexibility of the protein as seen in the crystal. Both the switch I and switch II regions are visible in the electron density of the GDP-bound molecule, but not in the molecule bound to GDPNH2. The C-terminus containing the CaaX-motif is partly ordered in both molecules due to an intramolecular disulfide bond formed between Cys105/Cys188 and Cys305/Cys388, respectively.     

Phosphorylation of Rab proteins from the brain of Bombyx mori

Rab proteins play fundamental roles in the regulation of membrane traffic. Previously, from the brain of Bombyx mori we isolated two cDNA clones (BRab1 and BRab14), each of which encoded a different member of Rab-protein family and was expressed in Escherichia coli and purified using an affinity chromatography. In this study, one cDNA clone (BRab8) was isolated from a cDNA library from the brain of B. mori. The recombinant protein was expressed in E. coli and purified. Next, the phosphorylations of these three purified BRab proteins were examined, using mammalian protein kinases in vitro. Protein kinase C (PKC) phosphorylated BRab8 and BRab14 proteins. Protein kinase A faintly phosphorylated BRab8 and BRab14 proteins. Calcium/calmodulin-dependent protein kinase faintly phosphorylated BRab8 protein. Next, brains of B. mori were dissected and homogenized. The homogenate showed a calcium-dependent protein kinase activity of BRab8 and BRab14 proteins. So PKC from the brain of B. mori was partially purified by a sequence of chromatographies on DEAE-Cellulofine and affinity chromatography. This PKC phosphorylated BRab8 and BRab14 proteins. These results suggest that the function of Rab proteins in the brain of B. mori is regulated by calcium-dependent protein kinases.     

Hsp42 is the general small heat shock protein in the cytosol of Saccharomyces cerevisiae

Small heat shock proteins (sHsps) are ubiquitous molecular chaperones that prevent the unspecific aggregation of proteins. So far, Hsp26 was the only unambiguously identified member of the sHsp family in Saccharomyces cerevisiae. We show here that the sHsp system in the cytosol of S. cerevisiae consists of two proteins, Hsp26 and Hsp42. Hsp42 forms large dynamic oligomers with a barrel-like structure. In contrast to Hsp26, which functions predominantly at heat shock temperatures, Hsp42 is active as a chaperone under all conditions tested in vivo and in vitro. Under heat shock conditions, both Hsp42 and Hsp26 suppress the aggregation of one-third of the cytosolic proteins. This subset is about 90% overlapping for Hsp42 and Hsp26. The sHsp substrates belong to different biochemical pathways. This indicates a general protective function of sHsps for proteome stability in S. cerevisiae. Consistent with this observation, sHsp knockout strains show phenotypical defects. Taken together, our results define Hsp42 as an important player for protein homeostasis at physiological and under stress conditions.     

Intracellular membrane transport systems in Trypanosoma brucei

Trypanosomes belong to the order kinetoplastida, an early diverging group of organisms in the eukaryotic lineage. The principal reasons for interest in these organisms are twofold; they provide a superb distant triangulation point from which to assess global features of eukaryotic biology and, more importantly, they are representative of a number of pathogenic parasitic protozoa with a huge public health impact --Trypanosoma brucei, T. cruzi and Leishmania spp. Recent advances in the study of intracellular transport in T. brucei have been considerable, and a fuller picture of the complexity, function and role that the endomembrane system plays in trypanosomes is finally emerging.     

Transfer of small chromosome fragments of<Emphasis Type="Italic">Agropyron elongatum</Emphasis> to wheat chromosome via asymmetric somatic hybridization

The chromosome constitution of hybrids and chromatin patterns of Agropyron elongatum (Host)Neviski in F₅ somatic hybrid lines -1–3 and I-1-9 between Triticum aestivum L. and A. elongatum were analyzed. Based on the statistic data of pollen mother cells, F₅ I-1-9 and-1-3 had 20–21 bivalents with a frequency of 84.66% and 85.28%, of which, 89.83% and 89.57% were ring bivalents. The result indicated that both hybrid lines were basically stable in the chromosome constitution and behavior. RAPD analysis showed that the two hybrids contained biparental and integrated DNA. GISH (Genome in situ hybridization) revealed that in the form of small chromosome segments, A. elongatum chromatin was scattered on 4–6 wheat chromosomes near by the region of centromere and telomere in the two hybrid lines. SSR analysis indicated that A. elongatum DNA segments were distributed on the 2A, 5B, 6B and 2D wheat chromosomes in the hybrids, which was in accordance with the GISH results that small-segments intercalated poly-site.     

Charge displacements during ATP-hydrolysis and synthesis of the Na+-transporting FoF1-ATPase of Ilyobacter tartaricus

Transient electrical currents generated by the Na(+)-transporting F(o)F(1)-ATPase of Ilyobacter tartaricus were observed in the hydrolytic and synthetic mode of the enzyme. Two techniques were applied: a photochemical ATP concentration jump on a planar lipid membrane and a rapid solution exchange on a solid supported membrane. We have identified an electrogenic reaction in the reaction cycle of the F(o)F(1)-ATPase that is related to the translocation of the cation through the membrane bound F(o) subcomplex of the ATPase. In addition, we have determined rate constants for the process: For ATP hydrolysis this reaction has a rate constant of 15-30 s(-1) if H(+) is transported and 30-60 s(-1) if Na(+) is transported. For ATP synthesis the rate constant is 50-70 s(-1).     

Daily rhythms of emergence of small invertebrates inhabiting shallow subtidal zones: A comparative investigation at four locations in Japan

Many small invertebrates inhabit the shallow subtidal zone and some of them emerge at times into the water column. The daily timing of their emergence is affected by the day/night and tidal cycles, and shows various patterns of synchrony with these cyclical factors, depending on the species. To detect possible regional differences in their emergence patterns, sampling was carried out at four locations in Japan: a boreal sea (Akkeshi), a temperate sea (Sugashima), an inland sea (Ushimado) and a subtropical sea (Iriomote-jima). The emergence patterns of major taxa were examined by visual inspection and by two statistical methods (periodogram and autocorrelogram). The composition of the taxa collected by the pump system, mostly crustaceans, was similar in each location. The number of taxa that emerged revealed a day/night rhythm in every location. This characteristic was clearest at Iriomote-jima and least clear at Sugashima. The daily fluctuation in the number of individuals in each taxon varied widely, from very clearly nocturnal to weakly diurnal patterns. In Iriomote-jima, the major taxa all showed well-demarcated nocturnal patterns, so these patterns were classified as either level N₂ or N₃ with regard to the degree of synchrony with the day/night cycle. With regard to the synchrony with the tide, the majority of patterns in all locations showed a double-tidal interval. Many patterns were slightly modified by the tidal cycle. These patterns were classified as level T₁ or T₂ with regard to the degree of synchrony with the tidal cycle. The synchrony with the tide was comparatively strong at Ushimado. The synchrony with day/night and tidal cycles varied even within the same species or closely related species. In benthic invertebrates, hiding or resting in the bottom substrates and swimming in the water column would occur alternatively. In planktonic animals, aggregation near the bottom and dispersal in the water column would occur alternatively. The daily timing of such activities may be synchronized with the day/night and tidal cycles to various degrees among species or populations, resulting in a wide variety of emergence patterns in subtidal small invertebrates. This type of behavior is not daily (diel) vertical migration; it should rather be called daily emergence/dispersal. Strong winds, rough waves and unknown seasonal factors would also affect emergence patterns. Furthermore, the transparency of the seawater may also strongly affect these patterns. Nocturnal patterns may be an adaptation to avoid vulnerability to sighted predators. Variation of synchrony with the tide indicates that by definition, the tidal rhythm can only be distinguished from the day/night rhythm. Hence, the daily patterns that are weakly modified by the tides (levels T₁ and T₂) should be called the tidal rhythms. As the period of such rhythms cannot be determined exactly by using statistical methods, lengthy field investigations and visual inspection of each pattern is essential to assess the influence of tides.     

Two genetic circuits repress the Caenorhabditis elegans heterochronic gene lin-28 after translation initiation

The heterochronic gene lin-28 of the nematode Caenorhabditis elegans controls the relative timing of diverse developmental events during the animal's larval stages. lin-28 is stage-specifically regulated by two genetic circuits: negatively by the 22-nt RNA lin-4 and positively by the heterochronic gene lin-14. Here, we show that lin-28 is repressed during normal development by a mechanism that acts on its mRNA after translation initiation. We provide evidence that lin-14 inhibits a negative regulation that is independent of the lin-4 RNA and involves the gene daf-12, which encodes a nuclear hormone receptor. The lin-4-independent repression does not affect the initiation of translation on the lin-28 mRNA, and like the lin-4-mediated repression, acts through the gene's 3'-untranslated region. In addition, we find that lin-4 is not sufficient to cause repression of lin-28 if the lin-4-independent circuit is inhibited. Therefore, the lin-4-independent circuit likely contributes substantially to the down-regulation of lin-28 that occurs during normal development. The role of lin-4 may be to initiate or potentiate the lin-4-independent circuit. We speculate that a parallel lin-4-independent regulatory mechanism regulates the expression of lin-14.